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The map label for this gene is cpcF [H]

Identifier: 158340347

GI number: 158340347

Start: 195014

End: 195667

Strand: Reverse

Name: cpcF [H]

Synonym: AM1_C0272

Alternate gene names: 158340347

Gene position: 195667-195014 (Counterclockwise)

Preceding gene: 158340353

Following gene: 158340346

Centisome position: 71.64

GC content: 36.7

Gene sequence:

>654_bases
ATGAGCAAATCAATTTCTGACTTGATAAATGATGTAGAAAAGGCAGATTCTTCAATTAAATTACTAGTTGCAGTATCAAG
TTTATCAAAAGCATGTAGTGACGAATCAATACCAACTTTGATTTCTGTGCTTAGTTACAATAATCCAGGTGCAGCAGTTG
CAGCTGTTAAAGGTCTAGTAAAAATTGGTAAAGAATCTGTACCTGCACTCATGGAGGAAATCAATAATCAAAACTACACT
GCAAAAGCTTGGGCAATAAGAGCATTAGCGGGTATTGGTGATCCAAGGAGTGTAGATGTCTTATTAAAGGCCGCGACCAC
AGATTTCTCTCCTAGTGTAAGGCGCACTGCTGCGAAAGGTTTGGGTGAGATACAGTGGCCAATAAAGCCAAAAAATTCTT
TAGATCCTCGAGAATTAGAAGTTTTAGAAACTCTACTTTCCATTAGCGAGAAAGATGAGGAATGGGCTGTGAGATATTCA
GCAATTGTGGGTTTACAGTTGCAATATAGGTTAATGACAGATGAAAATGAACAAATAAAATTTAAGATTAAATCTCATGT
TAGATCTATTGAAAGCAAGGATCCTGATTTTGCAGTGAGTGCACGAGCCCGTCTTGCTTTTTTAGAATTGTGTAATATGG
ATAATGATTCATAA

Upstream 100 bases:

>100_bases
TAAAATACAAAATATCTTTTTTGTCTGCTTATGGAAACAAGGAAAAGAAAAATTTTAAATTTTGAAATTCAAATGATTTA
AGTTAGTAAAAAAATAAGAC

Downstream 100 bases:

>100_bases
TTTAATCAGTTCTATCAAATAAAATATAATATTATTTAATATGATAAGTTGAGTCTGTATAGAATTTTTTAGTCTAAATC
TCTAAGTATGTAGAATTTTT

Product: phycocyanin alpha phycocyanobilin lyase; CpcF

Products: NA

Alternate protein names: Phycocyanin-1 operon protein CpcF [H]

Number of amino acids: Translated: 217; Mature: 216

Protein sequence:

>217_residues
MSKSISDLINDVEKADSSIKLLVAVSSLSKACSDESIPTLISVLSYNNPGAAVAAVKGLVKIGKESVPALMEEINNQNYT
AKAWAIRALAGIGDPRSVDVLLKAATTDFSPSVRRTAAKGLGEIQWPIKPKNSLDPRELEVLETLLSISEKDEEWAVRYS
AIVGLQLQYRLMTDENEQIKFKIKSHVRSIESKDPDFAVSARARLAFLELCNMDNDS

Sequences:

>Translated_217_residues
MSKSISDLINDVEKADSSIKLLVAVSSLSKACSDESIPTLISVLSYNNPGAAVAAVKGLVKIGKESVPALMEEINNQNYT
AKAWAIRALAGIGDPRSVDVLLKAATTDFSPSVRRTAAKGLGEIQWPIKPKNSLDPRELEVLETLLSISEKDEEWAVRYS
AIVGLQLQYRLMTDENEQIKFKIKSHVRSIESKDPDFAVSARARLAFLELCNMDNDS
>Mature_216_residues
SKSISDLINDVEKADSSIKLLVAVSSLSKACSDESIPTLISVLSYNNPGAAVAAVKGLVKIGKESVPALMEEINNQNYTA
KAWAIRALAGIGDPRSVDVLLKAATTDFSPSVRRTAAKGLGEIQWPIKPKNSLDPRELEVLETLLSISEKDEEWAVRYSA
IVGLQLQYRLMTDENEQIKFKIKSHVRSIESKDPDFAVSARARLAFLELCNMDNDS

Specific function: Required for the chromophorylation of the CpcA gene product [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CpcE/RpcE/PecE family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011989
- InterPro:   IPR016024
- InterPro:   IPR004155 [H]

Pfam domain/function: PF03130 HEAT_PBS [H]

EC number: 4.-.-.-

Molecular weight: Translated: 23735; Mature: 23604

Theoretical pI: Translated: 5.16; Mature: 5.16

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKSISDLINDVEKADSSIKLLVAVSSLSKACSDESIPTLISVLSYNNPGAAVAAVKGLV
CCCHHHHHHHHHHHCCCCEEEEEEHHHHHHHCCCCCHHHHHHHHHCCCCCHHHHHHHHHH
KIGKESVPALMEEINNQNYTAKAWAIRALAGIGDPRSVDVLLKAATTDFSPSVRRTAAKG
HHCHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCHHHHHEEECCCCCCHHHHHHHHHC
LGEIQWPIKPKNSLDPRELEVLETLLSISEKDEEWAVRYSAIVGLQLQYRLMTDENEQIK
CCCEECCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHEEEEEEEEECCCCCEEE
FKIKSHVRSIESKDPDFAVSARARLAFLELCNMDNDS
EEHHHHHHHHHCCCCCEEHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
SKSISDLINDVEKADSSIKLLVAVSSLSKACSDESIPTLISVLSYNNPGAAVAAVKGLV
CCHHHHHHHHHHHCCCCEEEEEEHHHHHHHCCCCCHHHHHHHHHCCCCCHHHHHHHHHH
KIGKESVPALMEEINNQNYTAKAWAIRALAGIGDPRSVDVLLKAATTDFSPSVRRTAAKG
HHCHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCHHHHHEEECCCCCCHHHHHHHHHC
LGEIQWPIKPKNSLDPRELEVLETLLSISEKDEEWAVRYSAIVGLQLQYRLMTDENEQIK
CCCEECCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHEEEEEEEEECCCCCEEE
FKIKSHVRSIESKDPDFAVSARARLAFLELCNMDNDS
EEHHHHHHHHHCCCCCEEHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA