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The map label for this gene is yjcF [C]

Identifier: 158340319

GI number: 158340319

Start: 177311

End: 178165

Strand: Direct

Name: yjcF [C]

Synonym: AM1_C0241

Alternate gene names: 158340319

Gene position: 177311-178165 (Clockwise)

Preceding gene: 158340318

Following gene: 158340322

Centisome position: 64.92

GC content: 46.9

Gene sequence:

>855_bases
ATGAATGCTCAGACAGATTGTGATAAAAAAGCCCTCCGCTGTTCCAAAGACCTGCAGAAGTTTTGGGAAAAGTACCATGC
TTCTGAGCGTCAATTTGCTGGGACTAACTTGCCGGGTGCCAACTTTTATCAGATGAACCTCAGTGGCTTTGATTTCAGTC
ATAGCCGTTTATCAGAAGTGAATCTGATTTGGGCAGATATCAGCGGAGTGAATTTTAAGGCGAGCAAATTACAAAGGAGT
CTTGCTATCTGGGTTCAGGCGTATTGGGCCGATTTTTCTGATGCTGATCTTCGCCATGCAGATTTCAGTTGCGCCAAGCT
GAGTGCTGCTCAGCTAAAGCGAACAGATTTCAGTCAGGCTAACTTGATGGGGGCGGATCTGTCTGACAGCGTGGCGCAGG
ATTCTTGCTTTAAGGGAGCTAATCTCTGGGGCGTGTGGGCACAGCGCGCTAATCTGACCAATGCATGTTTGTCTCATGTG
GACATGGCTACTGCAAAGCTAACAGGGGCTCAATTATTGGACTCAGATTTAAGTTGGAGTTGTCTATCTCAGGCTGTCTG
CAAGGGTGCTAATTTGACCTCAGCCTGCCTGGAAGGCAGTGATTTGAGAAAAATTGATTTTCGAGATGCCTGTCTAAGTC
GAGCAGATTTAAGTGTGACGGACTGTCAGGATGCATGTTTCTTCAAGGCCAATTTGTATGGGGCAGACCTAAGAGGGGCA
AATCTCACCCATGCCAACTTCACGGGTGCTGATATTAGTGGCGCAATATTGCCTGAAGAGTATGCTTCAAAGTTGGAAGC
CTTAGGACATCAACAGGCTCCAAGTGGAGAAAGATGGAATATTCAGTTGCCTTAG

Upstream 100 bases:

>100_bases
CCTCATGACGGATGTCCAAGGTTTAACACCACAAGAAGGCCGAGAGCTCAATGAGAGAGGAGCTCTAAATGTCTCCCAAG
CATAAAACAGCAATTGGATC

Downstream 100 bases:

>100_bases
AGTGTTTTGAAGTATGGGAATTAAAGTGTTTAAGATCCCAATTTTTTTCAGGAAGGGTCTTTTGCAGGAGAGGCTGACCA
TCTTCATCCAACATTTCAAT

Product: pentapeptide repeat-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 284; Mature: 284

Protein sequence:

>284_residues
MNAQTDCDKKALRCSKDLQKFWEKYHASERQFAGTNLPGANFYQMNLSGFDFSHSRLSEVNLIWADISGVNFKASKLQRS
LAIWVQAYWADFSDADLRHADFSCAKLSAAQLKRTDFSQANLMGADLSDSVAQDSCFKGANLWGVWAQRANLTNACLSHV
DMATAKLTGAQLLDSDLSWSCLSQAVCKGANLTSACLEGSDLRKIDFRDACLSRADLSVTDCQDACFFKANLYGADLRGA
NLTHANFTGADISGAILPEEYASKLEALGHQQAPSGERWNIQLP

Sequences:

>Translated_284_residues
MNAQTDCDKKALRCSKDLQKFWEKYHASERQFAGTNLPGANFYQMNLSGFDFSHSRLSEVNLIWADISGVNFKASKLQRS
LAIWVQAYWADFSDADLRHADFSCAKLSAAQLKRTDFSQANLMGADLSDSVAQDSCFKGANLWGVWAQRANLTNACLSHV
DMATAKLTGAQLLDSDLSWSCLSQAVCKGANLTSACLEGSDLRKIDFRDACLSRADLSVTDCQDACFFKANLYGADLRGA
NLTHANFTGADISGAILPEEYASKLEALGHQQAPSGERWNIQLP
>Mature_284_residues
MNAQTDCDKKALRCSKDLQKFWEKYHASERQFAGTNLPGANFYQMNLSGFDFSHSRLSEVNLIWADISGVNFKASKLQRS
LAIWVQAYWADFSDADLRHADFSCAKLSAAQLKRTDFSQANLMGADLSDSVAQDSCFKGANLWGVWAQRANLTNACLSHV
DMATAKLTGAQLLDSDLSWSCLSQAVCKGANLTSACLEGSDLRKIDFRDACLSRADLSVTDCQDACFFKANLYGADLRGA
NLTHANFTGADISGAILPEEYASKLEALGHQQAPSGERWNIQLP

Specific function: Unknown

COG id: COG1357

COG function: function code S; Uncharacterized low-complexity proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 7 pentapeptide repeat domains [H]

Homologues:

Organism=Homo sapiens, GI39753959, Length=159, Percent_Identity=31.4465408805031, Blast_Score=67, Evalue=2e-11,
Organism=Drosophila melanogaster, GI221377802, Length=216, Percent_Identity=26.3888888888889, Blast_Score=70, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001646 [H]

Pfam domain/function: PF00805 Pentapeptide [H]

EC number: NA

Molecular weight: Translated: 31133; Mature: 31133

Theoretical pI: Translated: 5.94; Mature: 5.94

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.9 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
3.9 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNAQTDCDKKALRCSKDLQKFWEKYHASERQFAGTNLPGANFYQMNLSGFDFSHSRLSEV
CCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHCCCCCCCCCCEEEEECCCCCCCHHHHHHE
NLIWADISGVNFKASKLQRSLAIWVQAYWADFSDADLRHADFSCAKLSAAQLKRTDFSQA
EEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHH
NLMGADLSDSVAQDSCFKGANLWGVWAQRANLTNACLSHVDMATAKLTGAQLLDSDLSWS
HEECCCCCHHHHHHHHHCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHH
CLSQAVCKGANLTSACLEGSDLRKIDFRDACLSRADLSVTDCQDACFFKANLYGADLRGA
HHHHHHHCCCCCHHHHHCCCCCEEECHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCCCC
NLTHANFTGADISGAILPEEYASKLEALGHQQAPSGERWNIQLP
CCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCEEEEECC
>Mature Secondary Structure
MNAQTDCDKKALRCSKDLQKFWEKYHASERQFAGTNLPGANFYQMNLSGFDFSHSRLSEV
CCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHCCCCCCCCCCEEEEECCCCCCCHHHHHHE
NLIWADISGVNFKASKLQRSLAIWVQAYWADFSDADLRHADFSCAKLSAAQLKRTDFSQA
EEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHH
NLMGADLSDSVAQDSCFKGANLWGVWAQRANLTNACLSHVDMATAKLTGAQLLDSDLSWS
HEECCCCCHHHHHHHHHCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHH
CLSQAVCKGANLTSACLEGSDLRKIDFRDACLSRADLSVTDCQDACFFKANLYGADLRGA
HHHHHHHCCCCCHHHHHCCCCCEEECHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCCCC
NLTHANFTGADISGAILPEEYASKLEALGHQQAPSGERWNIQLP
CCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]