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The map label for this gene is ykgD [C]

Identifier: 158340314

GI number: 158340314

Start: 173961

End: 174947

Strand: Reverse

Name: ykgD [C]

Synonym: AM1_C0236

Alternate gene names: 158340314

Gene position: 174947-173961 (Counterclockwise)

Preceding gene: 158340315

Following gene: 158340312

Centisome position: 64.05

GC content: 50.05

Gene sequence:

>987_bases
ATGAATTTTGAATTCGATATTTTGAGTGATGTTTTAAACTCGCTAGACATTTGTGGGAGCCTCTTGCTGCATGAGTCCTA
CACTGCACCTTGGGCCATTTCAGTCCCCGGTGCCCAACAACTAGGTAAGCTCCTAAGGGTTCAAACGGGCACCCGAGCAG
TGGCTTTTCATCTGGTTGAGCGAGGCTACATTGAGCTAACCTCACCCCAACTAGGGGTGAAGCCGATGGTCGTAGAAGCT
GGAGAAATGGTGATTTGCTTCAGCGGTTCACCTCACCAAATTTCACAAGGTACGGAGCCCCCAAGCATTTCAGTGGAATA
TGTATTAAGCGGTGGAGAGATCCCCTTTCGCTGTTCAGCGGATGCACGGAGCAGTTCCCTGTTATGTCTATGTGGGATTT
TTTACCTACGAGATACATACCTCAACCCTCTCTTTGCTGCACTGCCCCCGGTACTGCATGCCCCCGTTTCTCAGGTGGAA
TCCTTTCAGAATCTAACGGGTGTGGCTAGCTTAATTGCCAAAGAGTTGGATAAACCATCAGCAGGCAGTAGTTTTATGGT
CGAAAGACTCCTGGAATTACTCTGTGCTGGAGCCGTGCGATCCTACATGGCGAGGTTGCATCCTCAAGACCCCAGTTGGT
TAACAGGACTTCGCGATCCGATTATCAGTCGAGCATTGGCGAAAATCCATGCTCAACCCGGCCATGATTGGTCGGTCGAT
AGCCTAGCGCAAAGTGTCGAGTTATCTCCGTCACGATTTGCAGCCCGCTTCAAAACAACCCTCGGGGAAGGTCCAATGAC
CTACGTCTCTAAGTGGCGTCTTCATATAGCAAGCCGTCTCCTCAACAGGACTGAGAAAAATATCTATGAAATTGCCTCGG
ATGTCGGTTACGACAATTTGGCTGCTTTCACTCGCGCTTTTAAGCGTTATTTTGGCGAACCTCCAGGCGCTTGGAGGACC
CGCCATGAATCCGTCAGAACTGGGTAG

Upstream 100 bases:

>100_bases
GTGGTGTTCATAATGCGATAGAACTTAATATGCAGATTAAAGTAAATCAACAAGAGAATAAATCGCTAAAACTACTTTTT
ATTATGCTGAAACTACTGAA

Downstream 100 bases:

>100_bases
CCCACTCCTAAATCACAAAGTAATCAAGCTTAGTGCGTGAAGTTAACCCCCTATATTTGATTGTGCATCAATAAAGTGTG
GGATAGAAAGCTAAGTCTTG

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 328; Mature: 328

Protein sequence:

>328_residues
MNFEFDILSDVLNSLDICGSLLLHESYTAPWAISVPGAQQLGKLLRVQTGTRAVAFHLVERGYIELTSPQLGVKPMVVEA
GEMVICFSGSPHQISQGTEPPSISVEYVLSGGEIPFRCSADARSSSLLCLCGIFYLRDTYLNPLFAALPPVLHAPVSQVE
SFQNLTGVASLIAKELDKPSAGSSFMVERLLELLCAGAVRSYMARLHPQDPSWLTGLRDPIISRALAKIHAQPGHDWSVD
SLAQSVELSPSRFAARFKTTLGEGPMTYVSKWRLHIASRLLNRTEKNIYEIASDVGYDNLAAFTRAFKRYFGEPPGAWRT
RHESVRTG

Sequences:

>Translated_328_residues
MNFEFDILSDVLNSLDICGSLLLHESYTAPWAISVPGAQQLGKLLRVQTGTRAVAFHLVERGYIELTSPQLGVKPMVVEA
GEMVICFSGSPHQISQGTEPPSISVEYVLSGGEIPFRCSADARSSSLLCLCGIFYLRDTYLNPLFAALPPVLHAPVSQVE
SFQNLTGVASLIAKELDKPSAGSSFMVERLLELLCAGAVRSYMARLHPQDPSWLTGLRDPIISRALAKIHAQPGHDWSVD
SLAQSVELSPSRFAARFKTTLGEGPMTYVSKWRLHIASRLLNRTEKNIYEIASDVGYDNLAAFTRAFKRYFGEPPGAWRT
RHESVRTG
>Mature_328_residues
MNFEFDILSDVLNSLDICGSLLLHESYTAPWAISVPGAQQLGKLLRVQTGTRAVAFHLVERGYIELTSPQLGVKPMVVEA
GEMVICFSGSPHQISQGTEPPSISVEYVLSGGEIPFRCSADARSSSLLCLCGIFYLRDTYLNPLFAALPPVLHAPVSQVE
SFQNLTGVASLIAKELDKPSAGSSFMVERLLELLCAGAVRSYMARLHPQDPSWLTGLRDPIISRALAKIHAQPGHDWSVD
SLAQSVELSPSRFAARFKTTLGEGPMTYVSKWRLHIASRLLNRTEKNIYEIASDVGYDNLAAFTRAFKRYFGEPPGAWRT
RHESVRTG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786496, Length=199, Percent_Identity=27.6381909547739, Blast_Score=83, Evalue=3e-17,
Organism=Escherichia coli, GI87082197, Length=269, Percent_Identity=27.1375464684015, Blast_Score=70, Evalue=2e-13,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR018060 [H]

Pfam domain/function: PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 36053; Mature: 36053

Theoretical pI: Translated: 7.25; Mature: 7.25

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNFEFDILSDVLNSLDICGSLLLHESYTAPWAISVPGAQQLGKLLRVQTGTRAVAFHLVE
CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHCCCCHHHHHHHHH
RGYIELTSPQLGVKPMVVEAGEMVICFSGSPHQISQGTEPPSISVEYVLSGGEIPFRCSA
CCCEEECCCCCCCCCEEEECCCEEEEECCCCCCCCCCCCCCCCEEEEEEECCCCCEEECC
DARSSSLLCLCGIFYLRDTYLNPLFAALPPVLHAPVSQVESFQNLTGVASLIAKELDKPS
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
AGSSFMVERLLELLCAGAVRSYMARLHPQDPSWLTGLRDPIISRALAKIHAQPGHDWSVD
CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHH
SLAQSVELSPSRFAARFKTTLGEGPMTYVSKWRLHIASRLLNRTEKNIYEIASDVGYDNL
HHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
AAFTRAFKRYFGEPPGAWRTRHESVRTG
HHHHHHHHHHHCCCCCCHHHHHHHCCCC
>Mature Secondary Structure
MNFEFDILSDVLNSLDICGSLLLHESYTAPWAISVPGAQQLGKLLRVQTGTRAVAFHLVE
CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHCCCCHHHHHHHHH
RGYIELTSPQLGVKPMVVEAGEMVICFSGSPHQISQGTEPPSISVEYVLSGGEIPFRCSA
CCCEEECCCCCCCCCEEEECCCEEEEECCCCCCCCCCCCCCCCEEEEEEECCCCCEEECC
DARSSSLLCLCGIFYLRDTYLNPLFAALPPVLHAPVSQVESFQNLTGVASLIAKELDKPS
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
AGSSFMVERLLELLCAGAVRSYMARLHPQDPSWLTGLRDPIISRALAKIHAQPGHDWSVD
CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHH
SLAQSVELSPSRFAARFKTTLGEGPMTYVSKWRLHIASRLLNRTEKNIYEIASDVGYDNL
HHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
AAFTRAFKRYFGEPPGAWRTRHESVRTG
HHHHHHHHHHHCCCCCCHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1332944 [H]