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The map label for this gene is cpcS [H]

Identifier: 158340297

GI number: 158340297

Start: 164393

End: 165019

Strand: Direct

Name: cpcS [H]

Synonym: AM1_C0217

Alternate gene names: 158340297

Gene position: 164393-165019 (Clockwise)

Preceding gene: 158340296

Following gene: 158340298

Centisome position: 60.19

GC content: 38.76

Gene sequence:

>627_bases
ATGAATATTTTGGAATTTTTCCAGAAAAGTGAAGGATCTTGGAAATCAATTAGGACAACCCATCATCTTGCATTCAAAAA
AGCTGAATCAGGAGAATCAGTAATTTGTGTAAAAACTCTCTCCCCAGATGATACTCAAGTATTAGCTACCTGCAAAATCC
ATAATTTTGATCCCAAATTATCTATCGGCGGAGCATATGTCAGTTGGACGGGAGGGATGGAATGGGATAAGGAAGATGTC
AAGCATGATGGGTCAACCGCATTCGCCATTATTCAAGATACTGAGCAACCGCAAAGTGGGAAAATACTTCGTGATCGTGG
ATATGCTGATGCAGCACCTGTAGTGAGTAGTTATCAACTGAGCGAGGAAGATGTTCTTACTCTAACCACCAACTATGGAG
GTATGGATTCAACTGAGCAATTTTGGTTTGCTGCTCCAAATGTACGTCTTCGGACTAGCATAGTATCAATATCTGGTGGG
ATTACTACTGCCACTTTTTGCTCAGAAATTAGGATAATAAATACTAATGATTCTGAAGCTGTATCAATAAAGCAAGAGAA
AAAACTGGTCCAAAATAAGCAAAGCAAAATTGTGATGAATAAAATGACTCCTTCTTTTGGATGGTGA

Upstream 100 bases:

>100_bases
TAACTAATAAATGGTATGATTCTTTTCTTATATACTTTTTATTAAGAATAAACTTCAAGGTATATACTTTAACCGCACAC
AGAAAGAGGTATGGAAGATA

Downstream 100 bases:

>100_bases
TTTTTGGGGCAGATAATCATTTATCAGACATAATCCCAGTTGCTAAATAAATCTAGCTATAGTCTTCAGCATTAGCTCCA
AGAGAAATTAGTCATTATCA

Product: CpcS protein, putative

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 208; Mature: 208

Protein sequence:

>208_residues
MNILEFFQKSEGSWKSIRTTHHLAFKKAESGESVICVKTLSPDDTQVLATCKIHNFDPKLSIGGAYVSWTGGMEWDKEDV
KHDGSTAFAIIQDTEQPQSGKILRDRGYADAAPVVSSYQLSEEDVLTLTTNYGGMDSTEQFWFAAPNVRLRTSIVSISGG
ITTATFCSEIRIINTNDSEAVSIKQEKKLVQNKQSKIVMNKMTPSFGW

Sequences:

>Translated_208_residues
MNILEFFQKSEGSWKSIRTTHHLAFKKAESGESVICVKTLSPDDTQVLATCKIHNFDPKLSIGGAYVSWTGGMEWDKEDV
KHDGSTAFAIIQDTEQPQSGKILRDRGYADAAPVVSSYQLSEEDVLTLTTNYGGMDSTEQFWFAAPNVRLRTSIVSISGG
ITTATFCSEIRIINTNDSEAVSIKQEKKLVQNKQSKIVMNKMTPSFGW
>Mature_208_residues
MNILEFFQKSEGSWKSIRTTHHLAFKKAESGESVICVKTLSPDDTQVLATCKIHNFDPKLSIGGAYVSWTGGMEWDKEDV
KHDGSTAFAIIQDTEQPQSGKILRDRGYADAAPVVSSYQLSEEDVLTLTTNYGGMDSTEQFWFAAPNVRLRTSIVSISGG
ITTATFCSEIRIINTNDSEAVSIKQEKKLVQNKQSKIVMNKMTPSFGW

Specific function: Covalently attaches a chromophore to Cys residue(s) of phycobiliproteins [H]

COG id: NA

COG function: NA

Gene ontology:
GO:0005488: CpcS protein, putative

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CpcS/CpeS biliprotein lyase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012674
- InterPro:   IPR018536 [H]

Pfam domain/function: PF09367 CpeS [H]

EC number: NA

Molecular weight: Translated: 23067; Mature: 23067

Theoretical pI: Translated: 6.12; Mature: 6.12

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNILEFFQKSEGSWKSIRTTHHLAFKKAESGESVICVKTLSPDDTQVLATCKIHNFDPKL
CCHHHHHHCCCCCCHHHHHHHHEEEEECCCCCEEEEEEECCCCCCEEEEEEEEECCCCCE
SIGGAYVSWTGGMEWDKEDVKHDGSTAFAIIQDTEQPQSGKILRDRGYADAAPVVSSYQL
EECCEEEEECCCCCCCHHHHCCCCCEEEEEEECCCCCCCCCEEECCCCCCCCCCHHCEEC
SEEDVLTLTTNYGGMDSTEQFWFAAPNVRLRTSIVSISGGITTATFCSEIRIINTNDSEA
CCCCEEEEEECCCCCCCCCCEEEECCCCEEEEEEEEECCCCEEEEEECEEEEEECCCCCE
VSIKQEKKLVQNKQSKIVMNKMTPSFGW
EEHHHHHHHHHCCCCEEEEECCCCCCCC
>Mature Secondary Structure
MNILEFFQKSEGSWKSIRTTHHLAFKKAESGESVICVKTLSPDDTQVLATCKIHNFDPKL
CCHHHHHHCCCCCCHHHHHHHHEEEEECCCCCEEEEEEECCCCCCEEEEEEEEECCCCCE
SIGGAYVSWTGGMEWDKEDVKHDGSTAFAIIQDTEQPQSGKILRDRGYADAAPVVSSYQL
EECCEEEEECCCCCCCHHHHCCCCCEEEEEEECCCCCCCCCEEECCCCCCCCCCHHCEEC
SEEDVLTLTTNYGGMDSTEQFWFAAPNVRLRTSIVSISGGITTATFCSEIRIINTNDSEA
CCCCEEEEEECCCCCCCCCCEEEECCCCEEEEEEEEECCCCEEEEEECEEEEEECCCCCE
VSIKQEKKLVQNKQSKIVMNKMTPSFGW
EEHHHHHHHHHCCCCEEEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA