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The map label for this gene is cpcD [H]

Identifier: 158340296

GI number: 158340296

Start: 163417

End: 163821

Strand: Direct

Name: cpcD [H]

Synonym: AM1_C0216

Alternate gene names: 158340296

Gene position: 163417-163821 (Clockwise)

Preceding gene: 158340295

Following gene: 158340297

Centisome position: 59.83

GC content: 43.46

Gene sequence:

>405_bases
ATGTTAGGGCAATCTCGCCAAACTTTCATATATGAAGTAACCGGTTTACGACAAAACAGTGAAACCCAGAATCGAAATCA
TCAATTTCGAAACAGTAGTGTTTTGATTCAAGTTCCTCTAAGCCGGATGAATGCAGAAACACAGCGGATTACACGTTTGG
GTGGCAAAATTGTCCGTATCCGTCCAGCGAGTGATTATTCATCTGGTACTAAGGGTGTCGTTGGAACGGTTGGGGGGAAT
CGGCAGAAGCTATATAGAGTACGTGTGACCAAATCATCCTTAGCAAGGACAGCCAAGGTGAGAGCAAGCATCAGTGAATA
TCTTATTCCCTATGAACAACTCTCTTCTGCCCTGAAGCGATTCAACCAAAAAGGTAGCAAAGTACTTAATGTATCTCCAG
CGTAG

Upstream 100 bases:

>100_bases
TTGTTCCTTACAATCAACTCAATAACACCCTGAAACAGATCAATAAGTTGGGTGGTAAGGTTGCAAGCATTACTGTTGCG
AAATAGGAGTTAGAAACATA

Downstream 100 bases:

>100_bases
ATAATATGCTGACTGATCATTGGATAAACATTGTTACCATTTTATTGAAGCAAAAAAACGTTTTAACGACTCTGTCAAAA
TCTGTGTTAATAACACGGCA

Product: phycobilisome linker protein

Products: NA

Alternate protein names: L-9.7/R; Rod-capping linker protein [H]

Number of amino acids: Translated: 134; Mature: 134

Protein sequence:

>134_residues
MLGQSRQTFIYEVTGLRQNSETQNRNHQFRNSSVLIQVPLSRMNAETQRITRLGGKIVRIRPASDYSSGTKGVVGTVGGN
RQKLYRVRVTKSSLARTAKVRASISEYLIPYEQLSSALKRFNQKGSKVLNVSPA

Sequences:

>Translated_134_residues
MLGQSRQTFIYEVTGLRQNSETQNRNHQFRNSSVLIQVPLSRMNAETQRITRLGGKIVRIRPASDYSSGTKGVVGTVGGN
RQKLYRVRVTKSSLARTAKVRASISEYLIPYEQLSSALKRFNQKGSKVLNVSPA
>Mature_134_residues
MLGQSRQTFIYEVTGLRQNSETQNRNHQFRNSSVLIQVPLSRMNAETQRITRLGGKIVRIRPASDYSSGTKGVVGTVGGN
RQKLYRVRVTKSSLARTAKVRASISEYLIPYEQLSSALKRFNQKGSKVLNVSPA

Specific function: Rod linker protein, associated with phycocyanin. Linker polypeptides determine the state of aggregation and the location of the disk-shaped phycobiliprotein units within the phycobilisome and modulate their spectroscopic properties in order to mediate a d

COG id: COG0369

COG function: function code P; Sulfite reductase, alpha subunit (flavoprotein)

Gene ontology:

Cell location: Cellular thylakoid membrane; Peripheral membrane protein; Cytoplasmic side. Note=This protein occurs in the rod, it is associated with phycocyanin [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 cpcD-like domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008213 [H]

Pfam domain/function: PF01383 CpcD [H]

EC number: NA

Molecular weight: Translated: 14984; Mature: 14984

Theoretical pI: Translated: 11.99; Mature: 11.99

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLGQSRQTFIYEVTGLRQNSETQNRNHQFRNSSVLIQVPLSRMNAETQRITRLGGKIVRI
CCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCEEEEEECHHHCCHHHHHHHHCCCEEEEE
RPASDYSSGTKGVVGTVGGNRQKLYRVRVTKSSLARTAKVRASISEYLIPYEQLSSALKR
EECCCCCCCCCCEEECCCCCCEEEEEEEECHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
FNQKGSKVLNVSPA
HHCCCCEEEEECCC
>Mature Secondary Structure
MLGQSRQTFIYEVTGLRQNSETQNRNHQFRNSSVLIQVPLSRMNAETQRITRLGGKIVRI
CCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCEEEEEECHHHCCHHHHHHHHCCCEEEEE
RPASDYSSGTKGVVGTVGGNRQKLYRVRVTKSSLARTAKVRASISEYLIPYEQLSSALKR
EECCCCCCCCCCEEECCCCCCEEEEEEEECHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
FNQKGSKVLNVSPA
HHCCCCEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 3108238 [H]