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The map label for this gene is xerD [H]

Identifier: 148243794

GI number: 148243794

Start: 190843

End: 191970

Strand: Reverse

Name: xerD [H]

Synonym: Acry_3277

Alternate gene names: 148243794

Gene position: 191970-190843 (Counterclockwise)

Preceding gene: 148243795

Following gene: 148243793

Centisome position: 94.29

GC content: 72.43

Gene sequence:

>1128_bases
GTGCCTGACGACACCGAAATTGCGCCGCGCGAAATCCCTGACGCGCCATCGGCCGGCAGCCTGGTGCCCTCCCCGCCCCC
GCTCGCCGGTGACGGGCATGCGGTCCGGCGCTGGTTCAGCGAGATCGAGGACGAGCCGGTCCCGGTGGCCGATGGCACGC
TCGCCGGCGCCCGTAGCGCCGCCAGCGCCTATGCCCGCCGGGCCAAGGCGGACAACACCAGGCGGGCGTATCGGGCCGCG
GTGCGCGTATGGTGCCTCTGGTGCGACCGCCACGGGCTGACGCCCCTCCCCGCCTCCGGTGCTGATGTCGCCGCCTTCCT
CGCCGATGAGCGCGGCCGCGGCGTCTCGACCGAAACGCTCAAGCTCCGGCGCGCCGCGATCCGCTACCTGCATCGCCTCG
CCGGCTGCCCGGTGCCCACCGATGATGCCTGCGTCGCCGAGACCATGGCGGGCATCCAGCGCGATGCCGCCTCCCGTGGC
GAGATCCGCCGCAAGAAGGTGGCGGCGACGGCGACGGTGATCCGCCGGCTGTTGGCACCGATCGGCGATACCGAGCTGAC
TGACCTGCGCGACCGCGCGCTGATCCTGGTCGGCTTCGCCGGCGCGCTGCGGCGCTCGGAACTCGCCGGCATCAGGATCG
AGCACCTGACACCGTCTGAGCGGGGGCTCCGGCTGACCCTGCCGCAGACCAAAGGGAGCCAGACCGAGGCGGTCACCGTC
GCCCTGCCCTACGGCGATACCGAACTCTGTCCGGTGCATGCCCTTGAGCGCTGGCGGGTCGCCGCGGGGCTCCAGCGGGG
CCCGTTGTTCCGCCGGATCTGGTCACCACCATCCGGCCGCAAGGGGCGCGAGCGGACCGAGCCACCGGGCCCGGTCATTG
GCGAGCAGGCACTCACCCCGCAAAGCGTGGCCCTGATCATCCAGCGCAGGGCCATGGCGGCCGGGTTCGGCCGGCGCGAC
CTGGGCGGACACAGCCTCAAGCGCGGGGCGCTCACCACCGGGATGGAGCGCGGCGTCCATCCGGCCCGCCTGAAGCGGCT
CGGCCGCCACAAGAGCTATGACGTGCTCGGGGAGTATCTGGAGTTCGGCGACATCTTCGACGGGCACCCGTTGGATGGGG
TTCTGTGA

Upstream 100 bases:

>100_bases
TTCAATCGGCAGCCCATCGTGGCAAAGTTGCTGATCCTGCGGCGAAACCCTAAGTCTCCGGGCGCAGAGCCGACCGGAGT
GCGCTCAAGAGATTCTGCTC

Downstream 100 bases:

>100_bases
GCCTTGAAGTTGAGGCTCTCCGTTGAAGGTAGCATATAAGACGGACCACCCGTCCCGATTTGGCGGGGAGACAAGTAGGG
ATTGTGCGCCCGAGAGTCTG

Product: phage integrase domain/SAM domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 375; Mature: 374

Protein sequence:

>375_residues
MPDDTEIAPREIPDAPSAGSLVPSPPPLAGDGHAVRRWFSEIEDEPVPVADGTLAGARSAASAYARRAKADNTRRAYRAA
VRVWCLWCDRHGLTPLPASGADVAAFLADERGRGVSTETLKLRRAAIRYLHRLAGCPVPTDDACVAETMAGIQRDAASRG
EIRRKKVAATATVIRRLLAPIGDTELTDLRDRALILVGFAGALRRSELAGIRIEHLTPSERGLRLTLPQTKGSQTEAVTV
ALPYGDTELCPVHALERWRVAAGLQRGPLFRRIWSPPSGRKGRERTEPPGPVIGEQALTPQSVALIIQRRAMAAGFGRRD
LGGHSLKRGALTTGMERGVHPARLKRLGRHKSYDVLGEYLEFGDIFDGHPLDGVL

Sequences:

>Translated_375_residues
MPDDTEIAPREIPDAPSAGSLVPSPPPLAGDGHAVRRWFSEIEDEPVPVADGTLAGARSAASAYARRAKADNTRRAYRAA
VRVWCLWCDRHGLTPLPASGADVAAFLADERGRGVSTETLKLRRAAIRYLHRLAGCPVPTDDACVAETMAGIQRDAASRG
EIRRKKVAATATVIRRLLAPIGDTELTDLRDRALILVGFAGALRRSELAGIRIEHLTPSERGLRLTLPQTKGSQTEAVTV
ALPYGDTELCPVHALERWRVAAGLQRGPLFRRIWSPPSGRKGRERTEPPGPVIGEQALTPQSVALIIQRRAMAAGFGRRD
LGGHSLKRGALTTGMERGVHPARLKRLGRHKSYDVLGEYLEFGDIFDGHPLDGVL
>Mature_374_residues
PDDTEIAPREIPDAPSAGSLVPSPPPLAGDGHAVRRWFSEIEDEPVPVADGTLAGARSAASAYARRAKADNTRRAYRAAV
RVWCLWCDRHGLTPLPASGADVAAFLADERGRGVSTETLKLRRAAIRYLHRLAGCPVPTDDACVAETMAGIQRDAASRGE
IRRKKVAATATVIRRLLAPIGDTELTDLRDRALILVGFAGALRRSELAGIRIEHLTPSERGLRLTLPQTKGSQTEAVTVA
LPYGDTELCPVHALERWRVAAGLQRGPLFRRIWSPPSGRKGRERTEPPGPVIGEQALTPQSVALIIQRRAMAAGFGRRDL
GGHSLKRGALTTGMERGVHPARLKRLGRHKSYDVLGEYLEFGDIFDGHPLDGVL

Specific function: Site-Specific Tyrosine Recombinase, Which Acts By Catalyzing The Cutting And Rejoining Of The Recombining DNA Molecules. Binds Cooperatively To Specific DNA Consensus Sequences That Are Separated From Xerc Binding Sites By A Short Central Region, Forming

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR010998
- InterPro:   IPR023109 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 40605; Mature: 40474

Theoretical pI: Translated: 10.30; Mature: 10.30

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPDDTEIAPREIPDAPSAGSLVPSPPPLAGDGHAVRRWFSEIEDEPVPVADGTLAGARSA
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHH
ASAYARRAKADNTRRAYRAAVRVWCLWCDRHGLTPLPASGADVAAFLADERGRGVSTETL
HHHHHHHHHCCHHHHHHHHHHHHHHHEECCCCCCCCCCCCCHHHHHHHHCCCCCCCHHHH
KLRRAAIRYLHRLAGCPVPTDDACVAETMAGIQRDAASRGEIRRKKVAATATVIRRLLAP
HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
IGDTELTDLRDRALILVGFAGALRRSELAGIRIEHLTPSERGLRLTLPQTKGSQTEAVTV
CCCCHHHHHCCCEEEEEECHHHHHHHHHCCEEEEECCCCCCCEEEECCCCCCCCCCEEEE
ALPYGDTELCPVHALERWRVAAGLQRGPLFRRIWSPPSGRKGRERTEPPGPVIGEQALTP
EECCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCH
QSVALIIQRRAMAAGFGRRDLGGHSLKRGALTTGMERGVHPARLKRLGRHKSYDVLGEYL
HHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHH
EFGDIFDGHPLDGVL
HHCCCCCCCCCCCCC
>Mature Secondary Structure 
PDDTEIAPREIPDAPSAGSLVPSPPPLAGDGHAVRRWFSEIEDEPVPVADGTLAGARSA
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHH
ASAYARRAKADNTRRAYRAAVRVWCLWCDRHGLTPLPASGADVAAFLADERGRGVSTETL
HHHHHHHHHCCHHHHHHHHHHHHHHHEECCCCCCCCCCCCCHHHHHHHHCCCCCCCHHHH
KLRRAAIRYLHRLAGCPVPTDDACVAETMAGIQRDAASRGEIRRKKVAATATVIRRLLAP
HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
IGDTELTDLRDRALILVGFAGALRRSELAGIRIEHLTPSERGLRLTLPQTKGSQTEAVTV
CCCCHHHHHCCCEEEEEECHHHHHHHHHCCEEEEECCCCCCCEEEECCCCCCCCCCEEEE
ALPYGDTELCPVHALERWRVAAGLQRGPLFRRIWSPPSGRKGRERTEPPGPVIGEQALTP
EECCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCH
QSVALIIQRRAMAAGFGRRDLGGHSLKRGALTTGMERGVHPARLKRLGRHKSYDVLGEYL
HHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHH
EFGDIFDGHPLDGVL
HHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11073919 [H]