Click here to switch to the map view.

The map label for this gene is repB [H]

Identifier: 148243792

GI number: 148243792

Start: 186750

End: 187718

Strand: Reverse

Name: repB [H]

Synonym: Acry_3275

Alternate gene names: 148243792

Gene position: 187718-186750 (Counterclockwise)

Preceding gene: 148243793

Following gene: 148243791

Centisome position: 92.2

GC content: 56.35

Gene sequence:

>969_bases
ATGGGGCGCAAACACCTTCTTGAACACTTGATTTCTCCACCCGAGACCTCGGCCAGTGCTCCGCAAGCCATACGGAAGCC
AATGCCACGGGGGGTTGGTTTGGTCGGCGCAATGAGTGAATCGGTCGAGACGATGGTGGCCGATCTACGAGATGCCAAGG
AAAAGCTCGAAACCGGAGATGTAATCGTAGAGATTGATACCGATCTCATCGACCCTTCATTCATCACCGATCGCATTGGT
GAAGACGATGAAATGGACGCGTTCGTCGCGACCATTCGGGACCAAGGCCAGCGCACTCCGATTCTTCTCAGACCGCATCC
GGAGAGCCGAGGGCGCTATCAAATTGCGTTTGGGCACCGCCGCTACCGCGCCCTAAAAAGGCTCGGGCGCCCGGTCAGGG
CGATGGTGAAGCATCTCACCGACGAAGAACTAGTTGTTGCTCAAGGCCAGGAGAACCAAGACCGTCTCGATCTATCCTAC
ATCGAGCGAGCATTATTCGCTGCGCGGCTCGAGGCTCGGCAGTTCCAGCGCGACGTGATCTGCCTCGCGCTTAGCATCGA
CAAGACCGAAGTGTCGAGAATGATCAGCATCGCTACCGCTCTGCCCGCCGAGTTGGTCGAGGCGATCGGGCCGGCACAAA
AGACCGGACGTCGGAAATGGATGATCCTAGCCAAGACTGTCAAGGAAATCAGATGGCCGACCGAAATGGAACGCCTCCTC
CAAGTTTGCAAATCAGGTGGTGCAGCGGACAGCGATCAGAGATTCGATCTCGTGCTGAAAGCACTATCGCGGTGCAAATC
ACCCGCGCAAGCGGATGATCAGGGAGGAGGGCGGCATAGCTTCACAGTAGACAAGAAGCCAGGTGTAATCCGCATCCGCT
TCGATGAAACGAGCCTGCCAAAAGACATGGTGGAAGACCTCATGTCACGGGTGAGGCACGTATGCACCAGCTTTGGAGCA
AAAACATGA

Upstream 100 bases:

>100_bases
AGCAATTCACTCGGTCAACATACGATCGCGCACTCGAATCAATGAATCAGGTGAACGCGGAAATAGAGGCCCTGGTCGAA
AAGGCTTGGAGCAACTGAGA

Downstream 100 bases:

>100_bases
CCTAGTCAGTCAATAGAAAACCCGCCTTGCCGGGCGGGTTTCCCATCCAACTTCGCGGCGAGCGCGTAGCTATCGTCTTG
CATATTTAAGATAGTTCGAT

Product: parB-like partition protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 322; Mature: 321

Protein sequence:

>322_residues
MGRKHLLEHLISPPETSASAPQAIRKPMPRGVGLVGAMSESVETMVADLRDAKEKLETGDVIVEIDTDLIDPSFITDRIG
EDDEMDAFVATIRDQGQRTPILLRPHPESRGRYQIAFGHRRYRALKRLGRPVRAMVKHLTDEELVVAQGQENQDRLDLSY
IERALFAARLEARQFQRDVICLALSIDKTEVSRMISIATALPAELVEAIGPAQKTGRRKWMILAKTVKEIRWPTEMERLL
QVCKSGGAADSDQRFDLVLKALSRCKSPAQADDQGGGRHSFTVDKKPGVIRIRFDETSLPKDMVEDLMSRVRHVCTSFGA
KT

Sequences:

>Translated_322_residues
MGRKHLLEHLISPPETSASAPQAIRKPMPRGVGLVGAMSESVETMVADLRDAKEKLETGDVIVEIDTDLIDPSFITDRIG
EDDEMDAFVATIRDQGQRTPILLRPHPESRGRYQIAFGHRRYRALKRLGRPVRAMVKHLTDEELVVAQGQENQDRLDLSY
IERALFAARLEARQFQRDVICLALSIDKTEVSRMISIATALPAELVEAIGPAQKTGRRKWMILAKTVKEIRWPTEMERLL
QVCKSGGAADSDQRFDLVLKALSRCKSPAQADDQGGGRHSFTVDKKPGVIRIRFDETSLPKDMVEDLMSRVRHVCTSFGA
KT
>Mature_321_residues
GRKHLLEHLISPPETSASAPQAIRKPMPRGVGLVGAMSESVETMVADLRDAKEKLETGDVIVEIDTDLIDPSFITDRIGE
DDEMDAFVATIRDQGQRTPILLRPHPESRGRYQIAFGHRRYRALKRLGRPVRAMVKHLTDEELVVAQGQENQDRLDLSYI
ERALFAARLEARQFQRDVICLALSIDKTEVSRMISIATALPAELVEAIGPAQKTGRRKWMILAKTVKEIRWPTEMERLLQ
VCKSGGAADSDQRFDLVLKALSRCKSPAQADDQGGGRHSFTVDKKPGVIRIRFDETSLPKDMVEDLMSRVRHVCTSFGAK
T

Specific function: This protein is coded by a hairy root Ri plasmid, it is probably involved in its replication [H]

COG id: COG1475

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the parB family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004437
- InterPro:   IPR003115
- InterPro:   IPR017819
- InterPro:   IPR011111 [H]

Pfam domain/function: PF02195 ParBc; PF07506 RepB [H]

EC number: NA

Molecular weight: Translated: 36092; Mature: 35961

Theoretical pI: Translated: 8.63; Mature: 8.63

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGRKHLLEHLISPPETSASAPQAIRKPMPRGVGLVGAMSESVETMVADLRDAKEKLETGD
CCHHHHHHHHCCCCCCCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC
VIVEIDTDLIDPSFITDRIGEDDEMDAFVATIRDQGQRTPILLRPHPESRGRYQIAFGHR
EEEEECCCCCCCHHHHHHCCCCCHHHHHHHHHHHCCCCCCEEECCCCCCCCCEEEEECHH
RYRALKRLGRPVRAMVKHLTDEELVVAQGQENQDRLDLSYIERALFAARLEARQFQRDVI
HHHHHHHHCHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHE
CLALSIDKTEVSRMISIATALPAELVEAIGPAQKTGRRKWMILAKTVKEIRWPTEMERLL
EEEEECCHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCHHHHHHHHHHHHHCCHHHHHHHH
QVCKSGGAADSDQRFDLVLKALSRCKSPAQADDQGGGRHSFTVDKKPGVIRIRFDETSLP
HHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEECCCCCEEEEEECCCCCC
KDMVEDLMSRVRHVCTSFGAKT
HHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
GRKHLLEHLISPPETSASAPQAIRKPMPRGVGLVGAMSESVETMVADLRDAKEKLETGD
CHHHHHHHHCCCCCCCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC
VIVEIDTDLIDPSFITDRIGEDDEMDAFVATIRDQGQRTPILLRPHPESRGRYQIAFGHR
EEEEECCCCCCCHHHHHHCCCCCHHHHHHHHHHHCCCCCCEEECCCCCCCCCEEEEECHH
RYRALKRLGRPVRAMVKHLTDEELVVAQGQENQDRLDLSYIERALFAARLEARQFQRDVI
HHHHHHHHCHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHE
CLALSIDKTEVSRMISIATALPAELVEAIGPAQKTGRRKWMILAKTVKEIRWPTEMERLL
EEEEECCHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCHHHHHHHHHHHHHCCHHHHHHHH
QVCKSGGAADSDQRFDLVLKALSRCKSPAQADDQGGGRHSFTVDKKPGVIRIRFDETSLP
HHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEECCCCCEEEEEECCCCCC
KDMVEDLMSRVRHVCTSFGAKT
HHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA