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The map label for this gene is repC [H]

Identifier: 148243791

GI number: 148243791

Start: 185171

End: 186562

Strand: Reverse

Name: repC [H]

Synonym: Acry_3274

Alternate gene names: 148243791

Gene position: 186562-185171 (Counterclockwise)

Preceding gene: 148243792

Following gene: 148243788

Centisome position: 91.64

GC content: 57.69

Gene sequence:

>1392_bases
ATGGACACCGTTCAACGGGGTGAGAGGGTTGGCTTGGGCCATGCGCCAGGCCTCCGAAAACTCACCCCCAAGATGTTGGA
AACGATTGAGGTCGCCGAGACCCATAGGTTCACCTCGGAAATGCTCCCCGGGCAGGTATTGGCTGCATTCAAAGCAGCTG
CGCCGCATCTTGGGCTGCGGCCAAGCGTCGTACACGCCATCGACTGGCTCTTTCGGTTCACGAATGCCGTCGATTGGCAG
CCTTCCTCCCGGCCGATCGTGTGGCCTTCCGCAATCATGCAGCAACAAGAGCTGGGTCTCGGTCCAAGCCAGGTTAAGAA
TCTCAATCGCCATTTGGTCGAACTCGGTCTGGTCGTGATGAAGGACAGCCCCAACGGCAAGCGATATGGTCGGCGGGACT
CCAAGGGGCGCATCATCGAGGCTTACGGCTTCGATCTATCGCCGCTTGCCAGCCGCTTCACCGAGTTCCGGGCTGTGGCC
GAGGAGGGGAGGGAGGAGCGCGCCCGTTTGCAGGCCCTGAAGCGCCGAGCGACGATTGCCAGAAACGGTATCCGACAGCT
CCTGGACACTGCCGTCGAGCAAGGGATCTCGGGAGAGGAGTGGGAAACGCATCGCGTCGCGTCGGCTGTGGCGTCCCGTG
GCATTGCCGGCAGGAATCGATCAATCGAAATGGAAATGGCGGTTGCGGGGCTTGAGCAGGCCCTGAGCGATATGCGTCGT
TACCTGGAATTCGTTCTTGACGCGAGGAGAACAAAGGAAGCACAAGAATCAACCGAACTTGTGAATCTTGGCCCCAAGGG
GTTAGAAAATTGCCCCCACATTACAACTACAAACCACCTTCAAAATCTGAAAGATACAGTATTTGCATCGAAAAAAAGTA
GTCATTCTCCGGTTTTACCTGGTAAGGACCGGCCGTCTAAGGGGCTCGGAAATCATCTAAACTCAAGCAAGACGGCGCAC
GAACAACAGCGACCGGGCAAAGTTCGAATGGATACCGGTTCCCTCCTCAAAATCACACCAATGGAGCTGATTAAGCTCGC
ACCACGGCTGAAAACATACCTTAACAATCAGACGCCGACCTGGCCCGAGATTGTGGACGCTGCAGACTGGCTTCGCGATG
AAATGGGGATCTCCAAATTCATCTGGGGCGACGCCTGTCTGGTCATGGGCCGGGAGCAAGCCGCCATCGCCGTAGCCGTC
GTCTCGGCAAAGCCACTGGACCATTTCCGCAGCACTCCGGGTGGTTACTTCCACGGCCTGATCTCGAAGGCCAAAATCGG
CGAACTGCATCTTGCTCGGACGATCTGGGGCATGCGCGGCGCCGGCGAGCGTCACCCGAAATGCGACCGCGACCACTTGC
CTCCATCACCAGATCCAAGATCGTACGTGTGA

Upstream 100 bases:

>100_bases
AAGATAGTTCGATCGTCCACGTTTGCCAAGCAAAAATTGCCGTTTTTGTTTGGAGAGGTGACGTGCGTCTGCCGCGATCC
CAACTAGGAGAAGGATCACG

Downstream 100 bases:

>100_bases
TCGGCATCGCGTGCAGCTACAAGGTTGTGATCGATCACGACCATGCGAGACATTTCGGGCGGCCTCGTAACTTCGGGAGC
AGATCCTGCCTACTGCCCCA

Product: replication protein C

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 463; Mature: 463

Protein sequence:

>463_residues
MDTVQRGERVGLGHAPGLRKLTPKMLETIEVAETHRFTSEMLPGQVLAAFKAAAPHLGLRPSVVHAIDWLFRFTNAVDWQ
PSSRPIVWPSAIMQQQELGLGPSQVKNLNRHLVELGLVVMKDSPNGKRYGRRDSKGRIIEAYGFDLSPLASRFTEFRAVA
EEGREERARLQALKRRATIARNGIRQLLDTAVEQGISGEEWETHRVASAVASRGIAGRNRSIEMEMAVAGLEQALSDMRR
YLEFVLDARRTKEAQESTELVNLGPKGLENCPHITTTNHLQNLKDTVFASKKSSHSPVLPGKDRPSKGLGNHLNSSKTAH
EQQRPGKVRMDTGSLLKITPMELIKLAPRLKTYLNNQTPTWPEIVDAADWLRDEMGISKFIWGDACLVMGREQAAIAVAV
VSAKPLDHFRSTPGGYFHGLISKAKIGELHLARTIWGMRGAGERHPKCDRDHLPPSPDPRSYV

Sequences:

>Translated_463_residues
MDTVQRGERVGLGHAPGLRKLTPKMLETIEVAETHRFTSEMLPGQVLAAFKAAAPHLGLRPSVVHAIDWLFRFTNAVDWQ
PSSRPIVWPSAIMQQQELGLGPSQVKNLNRHLVELGLVVMKDSPNGKRYGRRDSKGRIIEAYGFDLSPLASRFTEFRAVA
EEGREERARLQALKRRATIARNGIRQLLDTAVEQGISGEEWETHRVASAVASRGIAGRNRSIEMEMAVAGLEQALSDMRR
YLEFVLDARRTKEAQESTELVNLGPKGLENCPHITTTNHLQNLKDTVFASKKSSHSPVLPGKDRPSKGLGNHLNSSKTAH
EQQRPGKVRMDTGSLLKITPMELIKLAPRLKTYLNNQTPTWPEIVDAADWLRDEMGISKFIWGDACLVMGREQAAIAVAV
VSAKPLDHFRSTPGGYFHGLISKAKIGELHLARTIWGMRGAGERHPKCDRDHLPPSPDPRSYV
>Mature_463_residues
MDTVQRGERVGLGHAPGLRKLTPKMLETIEVAETHRFTSEMLPGQVLAAFKAAAPHLGLRPSVVHAIDWLFRFTNAVDWQ
PSSRPIVWPSAIMQQQELGLGPSQVKNLNRHLVELGLVVMKDSPNGKRYGRRDSKGRIIEAYGFDLSPLASRFTEFRAVA
EEGREERARLQALKRRATIARNGIRQLLDTAVEQGISGEEWETHRVASAVASRGIAGRNRSIEMEMAVAGLEQALSDMRR
YLEFVLDARRTKEAQESTELVNLGPKGLENCPHITTTNHLQNLKDTVFASKKSSHSPVLPGKDRPSKGLGNHLNSSKTAH
EQQRPGKVRMDTGSLLKITPMELIKLAPRLKTYLNNQTPTWPEIVDAADWLRDEMGISKFIWGDACLVMGREQAAIAVAV
VSAKPLDHFRSTPGGYFHGLISKAKIGELHLARTIWGMRGAGERHPKCDRDHLPPSPDPRSYV

Specific function: This protein is coded by a hairy root Ri plasmid, it is probably involved in its replication [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005090
- InterPro:   IPR021760
- InterPro:   IPR011991 [H]

Pfam domain/function: PF03428 RP-C; PF11800 RP-C_C [H]

EC number: NA

Molecular weight: Translated: 51492; Mature: 51492

Theoretical pI: Translated: 10.31; Mature: 10.31

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDTVQRGERVGLGHAPGLRKLTPKMLETIEVAETHRFTSEMLPGQVLAAFKAAAPHLGLR
CCCHHCCCCCCCCCCCCHHHHCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCC
PSVVHAIDWLFRFTNAVDWQPSSRPIVWPSAIMQQQELGLGPSQVKNLNRHLVELGLVVM
HHHHHHHHHHHHHHCCCCCCCCCCCEECHHHHHHHHHCCCCHHHHHHHHHHHHHHCEEEE
KDSPNGKRYGRRDSKGRIIEAYGFDLSPLASRFTEFRAVAEEGREERARLQALKRRATIA
ECCCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RNGIRQLLDTAVEQGISGEEWETHRVASAVASRGIAGRNRSIEMEMAVAGLEQALSDMRR
HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEHHHHHHHHHHHHHHHHH
YLEFVLDARRTKEAQESTELVNLGPKGLENCPHITTTNHLQNLKDTVFASKKSSHSPVLP
HHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCC
GKDRPSKGLGNHLNSSKTAHEQQRPGKVRMDTGSLLKITPMELIKLAPRLKTYLNNQTPT
CCCCCCCCHHHHCCCCHHHHHHHCCCCEEECCCCEEEECHHHHHHHHHHHHHHHCCCCCC
WPEIVDAADWLRDEMGISKFIWGDACLVMGREQAAIAVAVVSAKPLDHFRSTPGGYFHGL
HHHHHHHHHHHHHHHCHHHHHHCCHHEEECCCCCEEEEEEECCCCHHHHHCCCCHHHHHH
ISKAKIGELHLARTIWGMRGAGERHPKCDRDHLPPSPDPRSYV
HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MDTVQRGERVGLGHAPGLRKLTPKMLETIEVAETHRFTSEMLPGQVLAAFKAAAPHLGLR
CCCHHCCCCCCCCCCCCHHHHCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCC
PSVVHAIDWLFRFTNAVDWQPSSRPIVWPSAIMQQQELGLGPSQVKNLNRHLVELGLVVM
HHHHHHHHHHHHHHCCCCCCCCCCCEECHHHHHHHHHCCCCHHHHHHHHHHHHHHCEEEE
KDSPNGKRYGRRDSKGRIIEAYGFDLSPLASRFTEFRAVAEEGREERARLQALKRRATIA
ECCCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RNGIRQLLDTAVEQGISGEEWETHRVASAVASRGIAGRNRSIEMEMAVAGLEQALSDMRR
HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEHHHHHHHHHHHHHHHHH
YLEFVLDARRTKEAQESTELVNLGPKGLENCPHITTTNHLQNLKDTVFASKKSSHSPVLP
HHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCC
GKDRPSKGLGNHLNSSKTAHEQQRPGKVRMDTGSLLKITPMELIKLAPRLKTYLNNQTPT
CCCCCCCCHHHHCCCCHHHHHHHCCCCEEECCCCEEEECHHHHHHHHHHHHHHHCCCCCC
WPEIVDAADWLRDEMGISKFIWGDACLVMGREQAAIAVAVVSAKPLDHFRSTPGGYFHGL
HHHHHHHHHHHHHHHCHHHHHHCCHHEEECCCCCEEEEEEECCCCHHHHHCCCCHHHHHH
ISKAKIGELHLARTIWGMRGAGERHPKCDRDHLPPSPDPRSYV
HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA