| Definition | Acidiphilium cryptum JF-5 plasmid pACRY01, complete sequence. |
|---|---|
| Accession | NC_009467 |
| Length | 203,589 |
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The map label for this gene is xynB [H]
Identifier: 148243663
GI number: 148243663
Start: 30805
End: 32238
Strand: Reverse
Name: xynB [H]
Synonym: Acry_3134
Alternate gene names: 148243663
Gene position: 32238-30805 (Counterclockwise)
Preceding gene: 148243664
Following gene: 148243662
Centisome position: 15.83
GC content: 56.9
Gene sequence:
>1434_bases ATGACGGCCATGTTCTCAAGCGACCTGAGCGGACGCACCACAGACTTTCCGCATTTCTGGGAGCATACGGTCGGCAGCGG CCATGCGACACTTGCTTTGCGGGCTGATTGGCAGGCGCAACTCAAGCAGGCGCATGACGAACTTGGCATGCGGCATGTCC GGTTTCACGGCATTCTGAGCGATGACATGGGAACGCTGGTGAGTGAGGGCGACACGTTCTTCTATTCGTTTTTCAATACC GACCAGATCTTCGATTTCCTGCTGTCGATCGGCATGAAGCCTTTTGTCGAATTGAGTTTCATGCCGTCTGCTCTGTCCTC CGGTGATCAGACGGTTTTTCACTACCGAGCCAATGTCGGCCGTCCCAGGGACTATGCGCAATGGGCCGTGCTGATCAGAA AGCTGGTACGTCATTGGGTGGACCGTTACGGATTGGGCGAAGTGCGGCAGTGGTTCTTCGAGGTCTGGAACGAACCGAAC CTGACGGCATTCGGAAACGGTCAGCAGAGCGATTATTTCGAGCTGTACCGCTACACCGTGGAGGCCATCAAGGGCGTTGA CGCAATGCTGAAAGTCGGCGGTCCCGCCACGGCGGCGAATGCGTGGATCGATGATTTTCTGGCATTCTGCAAGGCCAATG ACCTGCCGGCCGATTTCGTCAGTACACATCATTATCCCACGGATGCATTCGGCAAACCGGGCGACGACACCGAAGCTCAA TTAGCGGCCTCAACGCGCAGCATCCTGCGCGAACAGGCCCGCGACGTCCGAAAGAACGCCGGCGATTTGCCGGTCTACTA CACGGAGTGGTGCACATCCTCCAATCCGCGCGATCCGATGCATGACGATCCCTACGCCGCCGCGTTTATCGTCAAAACGA TCCTCGAAGCCAGTGGGCTGGTTCAGGGATACAGCTATTGGACGTTCTCAGACATTTTCGAGGAAAACTATTTCCCTTCG ATCCCATTCCACGGCGGATTCGGGTTGCTCAACATTCATGGCATCGCCAAGCCCGCCTATCGAGCCTTCCAGTTGCTGCA TGAACTGGGCACGCAGATGATGCCGGTCAAGGGGAGCCACGCAACCGTCGATGCCTGGTTCGTGCGCGGCGATCAGCGTT CCACGCTGGTATTGACGAACTTTGCGCTGCCGCGGCATCCGATCGAGACAGAGCAGGTTTCCTTCGAGCTCAAGTCCGCG AAGCCGGAATCGATGGCGTCCATTCAGCGGATCGACCTGGAGCACGCCAATGCGAAGCCCCATTGGGAGCAACGGGGCAA GCCTGAATATTTGAACGCCGCGACCATTGAAGAACTCAAGCATCTGTCGCAGTTCCAGAGCGAACCGGTTCCGGTCAATG GTGACTCCGGGAAGTTGAACATTAAAGTGTCGATGCCGCCACAATCGGTCGCCGCGATCCATTTCTCGAATTGA
Upstream 100 bases:
>100_bases CGGATGCCAGCTTCTTTCCATCGATCGGGGCGGTCAATCCGACGCTGACAATCATCGCCAACGCGCTTCGTGTCGCCGAC CGAATCAAGGAAAGACTGAA
Downstream 100 bases:
>100_bases CCGGGATGGGCGATCTGGCGCAGCTTTCGGACGAGGCACTCACGATCCGCCTGCAGCAGGCGGCTTTTTCCTATCTGATC GACTACGCTAACGCCGATAC
Product: glycoside hydrolase family protein
Products: NA
Alternate protein names: 1,4-beta-D-xylan xylohydrolase; Xylan 1,4-beta-xylosidase [H]
Number of amino acids: Translated: 477; Mature: 476
Protein sequence:
>477_residues MTAMFSSDLSGRTTDFPHFWEHTVGSGHATLALRADWQAQLKQAHDELGMRHVRFHGILSDDMGTLVSEGDTFFYSFFNT DQIFDFLLSIGMKPFVELSFMPSALSSGDQTVFHYRANVGRPRDYAQWAVLIRKLVRHWVDRYGLGEVRQWFFEVWNEPN LTAFGNGQQSDYFELYRYTVEAIKGVDAMLKVGGPATAANAWIDDFLAFCKANDLPADFVSTHHYPTDAFGKPGDDTEAQ LAASTRSILREQARDVRKNAGDLPVYYTEWCTSSNPRDPMHDDPYAAAFIVKTILEASGLVQGYSYWTFSDIFEENYFPS IPFHGGFGLLNIHGIAKPAYRAFQLLHELGTQMMPVKGSHATVDAWFVRGDQRSTLVLTNFALPRHPIETEQVSFELKSA KPESMASIQRIDLEHANAKPHWEQRGKPEYLNAATIEELKHLSQFQSEPVPVNGDSGKLNIKVSMPPQSVAAIHFSN
Sequences:
>Translated_477_residues MTAMFSSDLSGRTTDFPHFWEHTVGSGHATLALRADWQAQLKQAHDELGMRHVRFHGILSDDMGTLVSEGDTFFYSFFNT DQIFDFLLSIGMKPFVELSFMPSALSSGDQTVFHYRANVGRPRDYAQWAVLIRKLVRHWVDRYGLGEVRQWFFEVWNEPN LTAFGNGQQSDYFELYRYTVEAIKGVDAMLKVGGPATAANAWIDDFLAFCKANDLPADFVSTHHYPTDAFGKPGDDTEAQ LAASTRSILREQARDVRKNAGDLPVYYTEWCTSSNPRDPMHDDPYAAAFIVKTILEASGLVQGYSYWTFSDIFEENYFPS IPFHGGFGLLNIHGIAKPAYRAFQLLHELGTQMMPVKGSHATVDAWFVRGDQRSTLVLTNFALPRHPIETEQVSFELKSA KPESMASIQRIDLEHANAKPHWEQRGKPEYLNAATIEELKHLSQFQSEPVPVNGDSGKLNIKVSMPPQSVAAIHFSN >Mature_476_residues TAMFSSDLSGRTTDFPHFWEHTVGSGHATLALRADWQAQLKQAHDELGMRHVRFHGILSDDMGTLVSEGDTFFYSFFNTD QIFDFLLSIGMKPFVELSFMPSALSSGDQTVFHYRANVGRPRDYAQWAVLIRKLVRHWVDRYGLGEVRQWFFEVWNEPNL TAFGNGQQSDYFELYRYTVEAIKGVDAMLKVGGPATAANAWIDDFLAFCKANDLPADFVSTHHYPTDAFGKPGDDTEAQL AASTRSILREQARDVRKNAGDLPVYYTEWCTSSNPRDPMHDDPYAAAFIVKTILEASGLVQGYSYWTFSDIFEENYFPSI PFHGGFGLLNIHGIAKPAYRAFQLLHELGTQMMPVKGSHATVDAWFVRGDQRSTLVLTNFALPRHPIETEQVSFELKSAK PESMASIQRIDLEHANAKPHWEQRGKPEYLNAATIEELKHLSQFQSEPVPVNGDSGKLNIKVSMPPQSVAAIHFSN
Specific function: Beta-xylosidase is an intracellular xylan-degrading enzyme [H]
COG id: COG3664
COG function: function code G; Beta-xylosidase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glycosyl hydrolase 39 family [H]
Homologues:
Organism=Homo sapiens, GI110611239, Length=504, Percent_Identity=21.6269841269841, Blast_Score=67, Evalue=3e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000514 - InterPro: IPR017853 - InterPro: IPR013781 [H]
Pfam domain/function: PF01229 Glyco_hydro_39 [H]
EC number: =3.2.1.37 [H]
Molecular weight: Translated: 53806; Mature: 53675
Theoretical pI: Translated: 5.97; Mature: 5.97
Prosite motif: PS01027 GLYCOSYL_HYDROL_F39
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTAMFSSDLSGRTTDFPHFWEHTVGSGHATLALRADWQAQLKQAHDELGMRHVRFHGILS CCCCCCCCCCCCCCCCCHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHCCEEEEEEEEEC DDMGTLVSEGDTFFYSFFNTDQIFDFLLSIGMKPFVELSFMPSALSSGDQTVFHYRANVG CCHHHHHCCCCEEEEEECCHHHHHHHHHHCCCCCCEEEEECCHHHCCCCCEEEEEECCCC RPRDYAQWAVLIRKLVRHWVDRYGLGEVRQWFFEVWNEPNLTAFGNGQQSDYFELYRYTV CCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHH EAIKGVDAMLKVGGPATAANAWIDDFLAFCKANDLPADFVSTHHYPTDAFGKPGDDTEAQ HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHCCCCCCCCCCCCCCCCHHH LAASTRSILREQARDVRKNAGDLPVYYTEWCTSSNPRDPMHDDPYAAAFIVKTILEASGL HHHHHHHHHHHHHHHHHHCCCCCCEEEEHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC VQGYSYWTFSDIFEENYFPSIPFHGGFGLLNIHGIAKPAYRAFQLLHELGTQMMPVKGSH CCCCCCCHHHHHHHCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHCCCEECCCCCC ATVDAWFVRGDQRSTLVLTNFALPRHPIETEQVSFELKSAKPESMASIQRIDLEHANAKP CEEEEEEEECCCCCEEEEEECCCCCCCCCCHHHEEEECCCCCHHHHHHHHHHHHCCCCCC HWEQRGKPEYLNAATIEELKHLSQFQSEPVPVNGDSGKLNIKVSMPPQSVAAIHFSN CHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCCEEEEEECC >Mature Secondary Structure TAMFSSDLSGRTTDFPHFWEHTVGSGHATLALRADWQAQLKQAHDELGMRHVRFHGILS CCCCCCCCCCCCCCCCHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHCCEEEEEEEEEC DDMGTLVSEGDTFFYSFFNTDQIFDFLLSIGMKPFVELSFMPSALSSGDQTVFHYRANVG CCHHHHHCCCCEEEEEECCHHHHHHHHHHCCCCCCEEEEECCHHHCCCCCEEEEEECCCC RPRDYAQWAVLIRKLVRHWVDRYGLGEVRQWFFEVWNEPNLTAFGNGQQSDYFELYRYTV CCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHH EAIKGVDAMLKVGGPATAANAWIDDFLAFCKANDLPADFVSTHHYPTDAFGKPGDDTEAQ HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHCCCCCCCCCCCCCCCCHHH LAASTRSILREQARDVRKNAGDLPVYYTEWCTSSNPRDPMHDDPYAAAFIVKTILEASGL HHHHHHHHHHHHHHHHHHCCCCCCEEEEHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC VQGYSYWTFSDIFEENYFPSIPFHGGFGLLNIHGIAKPAYRAFQLLHELGTQMMPVKGSH CCCCCCCHHHHHHHCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHCCCEECCCCCC ATVDAWFVRGDQRSTLVLTNFALPRHPIETEQVSFELKSAKPESMASIQRIDLEHANAKP CEEEEEEEECCCCCEEEEEECCCCCCCCCCHHHEEEECCCCCHHHHHHHHHHHHCCCCCC HWEQRGKPEYLNAATIEELKHLSQFQSEPVPVNGDSGKLNIKVSMPPQSVAAIHFSN CHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCCEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 2111111 [H]