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The map label for this gene is aopD [H]

Identifier: 145301447

GI number: 145301447

Start: 64302

End: 65198

Strand: Reverse

Name: aopD [H]

Synonym: ASA_P5G064

Alternate gene names: 145301447

Gene position: 65198-64302 (Counterclockwise)

Preceding gene: 145301448

Following gene: 145301446

Centisome position: 42.04

GC content: 55.18

Gene sequence:

>897_bases
ATGATTAACAGTGATTATACAAATGGCGTGACCCGTAACGCTCCGCTGACCGAGTTAGATACCGATGAGGCGCAGCAGGT
TCGCAATGCCGCCACTGCCCATGAGGCTGCCGGTTCGACCCGTCCGCAAGGGTTAGAGAAGAAGAGTGTTCCCGCCCTGC
CACGCCCCTCCATCCCTTTCAATACCAAAGGGGTGACCCAGATGGTTGCGCAGCTGGACAGTACGATGGAGATGATGTCC
TTGCTGTTCAAGCTGGCCCGTCTGGCCCGTGAAGAGGGGTTACAGGTTCGGGATATCGAAAACAAGCTGGTCATCAGCAA
GCAGCAGGCGCAAGTAGACGAGATGCGCCATGGTGCCAAGCTGATGATCGTCATGGCGGTGGTCTCCGGCGTGATGGCGG
GGTTCTCTGCCGTTATGGGCGGGTTTAGCCTGGCCCAAAGTGCCAAGGCCATCAAGCAGCAAAAATCCCTTGACGCCAAG
ATTGCCGGTCGCGAGGCCTTGATTGATGCCAAGGTTGATAGCTTGAACTCGCGAGGCCAGCAGGTTGACCGTGCTGAGGT
GGGCAAGGTCTGGAAACAGGATCAAGTCGCAGACAGTAATGCGAGCCGGTTGATGGACAAGAAATTTGCTCGTAATACTG
AGCGAGCACAGGTGTTTAATACCGTATCCCAAGCTACGGGGCAAACGGTTAACGCTGCGATACAGGCCGCTCAGGCCAAA
AGTCAGGCTGACGCCAAGGAAGATGAGGTCGAGGCGACCATCAGCCAGACCGAGAAACAGAAGGCCGAGGACAATATGTC
CTTCAATGCCAACTTTATGAAAGATCTGCTGCAATTGATGCAGCAGTATTCCCAGAGCCAGAATCAGGCCTGGAAAGCGG
CATTCGGCGTTGCATAA

Upstream 100 bases:

>100_bases
CCAGCAGACCATGGAGATGATCTTTCAGTTGATCAATGCCAAGGGCGACATGATGAACAACTTGGCCCGTAGACCGGCCG
CTATCTAAGGAGTACCGACC

Downstream 100 bases:

>100_bases
ACGCCATGGCAATCAAGGCGCTCATTCGGGCGCCTTTTTGTTTTTCCGGCCATTTTTCTTAAAAGTGCCGCCCTTGAGTG
ATAGCCCGCATGGCGGTGTC

Product: AopD protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 298; Mature: 298

Protein sequence:

>298_residues
MINSDYTNGVTRNAPLTELDTDEAQQVRNAATAHEAAGSTRPQGLEKKSVPALPRPSIPFNTKGVTQMVAQLDSTMEMMS
LLFKLARLAREEGLQVRDIENKLVISKQQAQVDEMRHGAKLMIVMAVVSGVMAGFSAVMGGFSLAQSAKAIKQQKSLDAK
IAGREALIDAKVDSLNSRGQQVDRAEVGKVWKQDQVADSNASRLMDKKFARNTERAQVFNTVSQATGQTVNAAIQAAQAK
SQADAKEDEVEATISQTEKQKAEDNMSFNANFMKDLLQLMQQYSQSQNQAWKAAFGVA

Sequences:

>Translated_298_residues
MINSDYTNGVTRNAPLTELDTDEAQQVRNAATAHEAAGSTRPQGLEKKSVPALPRPSIPFNTKGVTQMVAQLDSTMEMMS
LLFKLARLAREEGLQVRDIENKLVISKQQAQVDEMRHGAKLMIVMAVVSGVMAGFSAVMGGFSLAQSAKAIKQQKSLDAK
IAGREALIDAKVDSLNSRGQQVDRAEVGKVWKQDQVADSNASRLMDKKFARNTERAQVFNTVSQATGQTVNAAIQAAQAK
SQADAKEDEVEATISQTEKQKAEDNMSFNANFMKDLLQLMQQYSQSQNQAWKAAFGVA
>Mature_298_residues
MINSDYTNGVTRNAPLTELDTDEAQQVRNAATAHEAAGSTRPQGLEKKSVPALPRPSIPFNTKGVTQMVAQLDSTMEMMS
LLFKLARLAREEGLQVRDIENKLVISKQQAQVDEMRHGAKLMIVMAVVSGVMAGFSAVMGGFSLAQSAKAIKQQKSLDAK
IAGREALIDAKVDSLNSRGQQVDRAEVGKVWKQDQVADSNASRLMDKKFARNTERAQVFNTVSQATGQTVNAAIQAAQAK
SQADAKEDEVEATISQTEKQKAEDNMSFNANFMKDLLQLMQQYSQSQNQAWKAAFGVA

Specific function: Interacts with the target membrane to form channel structures involved either in translocation of yopE into the cytoplasmic space of the target cell or in the cytotoxic effect of the yopE protein [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008898 [H]

Pfam domain/function: PF05844 YopD [H]

EC number: NA

Molecular weight: Translated: 32468; Mature: 32468

Theoretical pI: Translated: 9.38; Mature: 9.38

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.7 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.7 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MINSDYTNGVTRNAPLTELDTDEAQQVRNAATAHEAAGSTRPQGLEKKSVPALPRPSIPF
CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
NTKGVTQMVAQLDSTMEMMSLLFKLARLAREEGLQVRDIENKLVISKQQAQVDEMRHGAK
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHHHCCHH
LMIVMAVVSGVMAGFSAVMGGFSLAQSAKAIKQQKSLDAKIAGREALIDAKVDSLNSRGQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCH
QVDRAEVGKVWKQDQVADSNASRLMDKKFARNTERAQVFNTVSQATGQTVNAAIQAAQAK
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHHHCCHHHHHHHHHHHHH
SQADAKEDEVEATISQTEKQKAEDNMSFNANFMKDLLQLMQQYSQSQNQAWKAAFGVA
HHCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MINSDYTNGVTRNAPLTELDTDEAQQVRNAATAHEAAGSTRPQGLEKKSVPALPRPSIPF
CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
NTKGVTQMVAQLDSTMEMMSLLFKLARLAREEGLQVRDIENKLVISKQQAQVDEMRHGAK
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHHHCCHH
LMIVMAVVSGVMAGFSAVMGGFSLAQSAKAIKQQKSLDAKIAGREALIDAKVDSLNSRGQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCH
QVDRAEVGKVWKQDQVADSNASRLMDKKFARNTERAQVFNTVSQATGQTVNAAIQAAQAK
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHHHCCHHHHHHHHHHHHH
SQADAKEDEVEATISQTEKQKAEDNMSFNANFMKDLLQLMQQYSQSQNQAWKAAFGVA
HHCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8418066 [H]