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The map label for this gene is traD [H]

Identifier: 145301425

GI number: 145301425

Start: 40743

End: 42905

Strand: Direct

Name: traD [H]

Synonym: ASA_P5G042

Alternate gene names: 145301425

Gene position: 40743-42905 (Clockwise)

Preceding gene: 145301424

Following gene: 145301426

Centisome position: 26.27

GC content: 54.42

Gene sequence:

>2163_bases
ATGAGCTTAAACACCCGCGATGTGACGCAGGGCGGGCAAGTCGCGTTTATGCGTCTGCGCATGTTCCTGCAAATAAACAA
CATTCTATCCTATTGGCTTATTTTGTCCTTTATTGTCCTGACCGGGTCGATTTTATTTTATCGTGTCAGCACCCAAAACC
TGATCAACGGTCTCATGTACTGGTATGCAACCACCATTGAACCGTTGCATAAATTCATGACCAATCCGCCGACCTACAAG
ATCCAATATTATGAGCGCGTCCTGCACTACAACACCAAGCAGATATTGAGTGATGCCTACACGGTCTATTGCGGACAGCT
ATTCAAGAACGAACTCATTATTGCCGCTTTATCCTCGATGATCATCGTGTTTGTCGCTGGCCTGCTGTTCTATTTGTATA
TTGGTATATTGGGCAAAAAGCAGAGTGAAGACGAGATAACCGGCGGGCGCACCCTGAGTGACAACCCGAAAAAAGTCGCC
CGCATGATGCGTCGCCAAAAAGTAGCCTCCGATATCATCGTGGATGATCTGCCCATTATCAAAGACAGCGAAATTCAGAA
CTTCGCCATGCATGGTACCGTGGGTTCGGGTAAATCGACGCTCATGCGCAAATTTCTCGACCAGTGCCGTCAGCGCGGGG
ATATGGTCATTATTTATGACAAGGGCTGCACCTTTGTCGAAGAGTATTATCAGGAAGGCCGCGACATCATCCTTAACCCC
CTGGATCAACGCTGCGCCAACTGGGATATGTGGGAAGAGTGCCAGACCTTGCCCGATCTCGAATCGGCAGCCACCACCCT
TATTCCGATGGGCTCCTCGGAAGACCCCTTCTGGCAGGGCTCGGCCCGCACTATCTTTGCCGAAGGTGCCCACCGCCTGC
GCACTGAAAAAGGGCGCAGCTATAACTTGTTCCTGCGCACCCTCCTGGCCATCACCCTCGATAAACTGCGCGAGTTTCTG
GCAGGGACGCCCGCAGCCAACCTGGTTGACGGCAAGATAGAAAAAACCGCCATCTCTATTCGAAGCGTGTTGACCAACTA
CGTTAAGGCGATGCGCTATCTGCAGGGCATTGAGCGCAAAGGTAAACCCTTTACCATTCGCCAGTGGATGCAGGGCGTCC
GTGACGGTGGTGAAAATGGCTGGTTGTTCATCACCTCCAACCAAAAACACCACGAATCCCTCAAACCCTTGATCTCGATG
TGGCTCAGCATTGCCGCCAACAGCCTGCTATCAATGGGCGAAAACCGCTACCGGCGCGTGTGGTTCTTCTATGACGAGCT
GCCCTCCCTGCACAAGCTGCCGAGCCTGCCGTTCATCATCGCCGAGGCCCGCAAGTTCGGCGGCTGTTTTGCGTTGGGCT
TCCAGTCCTACTCGCAGCTCGAGGAGATTTACGGCAATAAATTTGCCGAGGCCATGTATGACCTGCTCAACACCAAGTAT
TTCTTTCGCTCCCCCTCTGCCTCCGTCGCCAAATTTGTCGAGGAGGATATCGGCGAAACCGTGCGCAAGAAGTTCTCCGA
GCAGACCAGTTTCGGTGCCGATCAGGTGCGTGACGGTATCTCGTTTGGCAAGGATGAGGAGCGCGTCAATATTGTCAGCT
ACACCGACATTCAGATGCTCGACAACCTGGACTGTTTCGTGACATTACCTGGCAACTTCCCGGTGGTGCGCATGACACTC
AAATTCGTGAAGAAGGAGAAAATTGCCGAGTCCCTGCCAGAGCGGGATATCCAGTCCAGCCTGGATCCCGAAGTGGACGA
CGAGATCACCCAGCGTCTCAACGAGACTGGCAAGATCTTCGACAACGTCACCCCCGGCGTACTCCCTGCGGTTGCCGCCC
AGGCAGCAGCCACCTTTTCGATAGTGACCCACGCCACCGCGCAGCCCCCAACCCCAGTGACCGTGCCCGCTCAGGCGGTT
CAAGCAACGGACACCGGCACCGAGACGGCGACAACGCAACCACCTGCCGGTCGTGACCAGGAGCTCACCATGCGCGACCC
CCGACCTGCAGGCGTCGATGAAAACGGGGTGATTTACGACGAGGATCTCTACGCCGAGTACCAGAAATCCGCACAGACGC
AGCAAGAAGCAGCGCGACGCGAAGAGGTCAACATTAACCATCACCATCAAGAGCTGGGTGGTGACGAGCCGGAGTTTATG
TAA

Upstream 100 bases:

>100_bases
CTGGAAGACCAACTTTCAAAATCGGGCGCTGGCATATTCTAAGACCTGTTGACGGTTAATATCAGGGGGAGCTCCTCCCC
CCTATCCTTGAGGCAATATC

Downstream 100 bases:

>100_bases
ATGCTGTCACTTTCCACCATCAAGGGCAGCGCGGCCTACTACGCTGCCGAGGAAAACTATTACGCCATGGGCGAGCTCGA
ATCGGTCTGGATGGGGGAAG

Product: TraD protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 720; Mature: 719

Protein sequence:

>720_residues
MSLNTRDVTQGGQVAFMRLRMFLQINNILSYWLILSFIVLTGSILFYRVSTQNLINGLMYWYATTIEPLHKFMTNPPTYK
IQYYERVLHYNTKQILSDAYTVYCGQLFKNELIIAALSSMIIVFVAGLLFYLYIGILGKKQSEDEITGGRTLSDNPKKVA
RMMRRQKVASDIIVDDLPIIKDSEIQNFAMHGTVGSGKSTLMRKFLDQCRQRGDMVIIYDKGCTFVEEYYQEGRDIILNP
LDQRCANWDMWEECQTLPDLESAATTLIPMGSSEDPFWQGSARTIFAEGAHRLRTEKGRSYNLFLRTLLAITLDKLREFL
AGTPAANLVDGKIEKTAISIRSVLTNYVKAMRYLQGIERKGKPFTIRQWMQGVRDGGENGWLFITSNQKHHESLKPLISM
WLSIAANSLLSMGENRYRRVWFFYDELPSLHKLPSLPFIIAEARKFGGCFALGFQSYSQLEEIYGNKFAEAMYDLLNTKY
FFRSPSASVAKFVEEDIGETVRKKFSEQTSFGADQVRDGISFGKDEERVNIVSYTDIQMLDNLDCFVTLPGNFPVVRMTL
KFVKKEKIAESLPERDIQSSLDPEVDDEITQRLNETGKIFDNVTPGVLPAVAAQAAATFSIVTHATAQPPTPVTVPAQAV
QATDTGTETATTQPPAGRDQELTMRDPRPAGVDENGVIYDEDLYAEYQKSAQTQQEAARREEVNINHHHQELGGDEPEFM

Sequences:

>Translated_720_residues
MSLNTRDVTQGGQVAFMRLRMFLQINNILSYWLILSFIVLTGSILFYRVSTQNLINGLMYWYATTIEPLHKFMTNPPTYK
IQYYERVLHYNTKQILSDAYTVYCGQLFKNELIIAALSSMIIVFVAGLLFYLYIGILGKKQSEDEITGGRTLSDNPKKVA
RMMRRQKVASDIIVDDLPIIKDSEIQNFAMHGTVGSGKSTLMRKFLDQCRQRGDMVIIYDKGCTFVEEYYQEGRDIILNP
LDQRCANWDMWEECQTLPDLESAATTLIPMGSSEDPFWQGSARTIFAEGAHRLRTEKGRSYNLFLRTLLAITLDKLREFL
AGTPAANLVDGKIEKTAISIRSVLTNYVKAMRYLQGIERKGKPFTIRQWMQGVRDGGENGWLFITSNQKHHESLKPLISM
WLSIAANSLLSMGENRYRRVWFFYDELPSLHKLPSLPFIIAEARKFGGCFALGFQSYSQLEEIYGNKFAEAMYDLLNTKY
FFRSPSASVAKFVEEDIGETVRKKFSEQTSFGADQVRDGISFGKDEERVNIVSYTDIQMLDNLDCFVTLPGNFPVVRMTL
KFVKKEKIAESLPERDIQSSLDPEVDDEITQRLNETGKIFDNVTPGVLPAVAAQAAATFSIVTHATAQPPTPVTVPAQAV
QATDTGTETATTQPPAGRDQELTMRDPRPAGVDENGVIYDEDLYAEYQKSAQTQQEAARREEVNINHHHQELGGDEPEFM
>Mature_719_residues
SLNTRDVTQGGQVAFMRLRMFLQINNILSYWLILSFIVLTGSILFYRVSTQNLINGLMYWYATTIEPLHKFMTNPPTYKI
QYYERVLHYNTKQILSDAYTVYCGQLFKNELIIAALSSMIIVFVAGLLFYLYIGILGKKQSEDEITGGRTLSDNPKKVAR
MMRRQKVASDIIVDDLPIIKDSEIQNFAMHGTVGSGKSTLMRKFLDQCRQRGDMVIIYDKGCTFVEEYYQEGRDIILNPL
DQRCANWDMWEECQTLPDLESAATTLIPMGSSEDPFWQGSARTIFAEGAHRLRTEKGRSYNLFLRTLLAITLDKLREFLA
GTPAANLVDGKIEKTAISIRSVLTNYVKAMRYLQGIERKGKPFTIRQWMQGVRDGGENGWLFITSNQKHHESLKPLISMW
LSIAANSLLSMGENRYRRVWFFYDELPSLHKLPSLPFIIAEARKFGGCFALGFQSYSQLEEIYGNKFAEAMYDLLNTKYF
FRSPSASVAKFVEEDIGETVRKKFSEQTSFGADQVRDGISFGKDEERVNIVSYTDIQMLDNLDCFVTLPGNFPVVRMTLK
FVKKEKIAESLPERDIQSSLDPEVDDEITQRLNETGKIFDNVTPGVLPAVAAQAAATFSIVTHATAQPPTPVTVPAQAVQ
ATDTGTETATTQPPAGRDQELTMRDPRPAGVDENGVIYDEDLYAEYQKSAQTQQEAARREEVNINHHHQELGGDEPEFM

Specific function: TraD is a cell envelope protein. The function of traD is unknown but it is essential for DNA transfer. It may form or may be part of a non-specific pore for DNA export, or it may directly energize DNA transport [H]

COG id: COG3505

COG function: function code U; Type IV secretory pathway, VirD4 components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To traD of plasmid IncFII R100 [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014128
- InterPro:   IPR019476
- InterPro:   IPR022585 [H]

Pfam domain/function: PF12615 TraD_N; PF10412 TrwB_AAD_bind [H]

EC number: NA

Molecular weight: Translated: 81671; Mature: 81540

Theoretical pI: Translated: 5.61; Mature: 5.61

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLNTRDVTQGGQVAFMRLRMFLQINNILSYWLILSFIVLTGSILFYRVSTQNLINGLMY
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHEEEECHHHHHHHHHH
WYATTIEPLHKFMTNPPTYKIQYYERVLHYNTKQILSDAYTVYCGQLFKNELIIAALSSM
HHHHHHHHHHHHHCCCCCEEHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IIVFVAGLLFYLYIGILGKKQSEDEITGGRTLSDNPKKVARMMRRQKVASDIIVDDLPII
HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCC
KDSEIQNFAMHGTVGSGKSTLMRKFLDQCRQRGDMVIIYDKGCTFVEEYYQEGRDIILNP
CCCCCHHHEEECCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHCCCCEECCC
LDQRCANWDMWEECQTLPDLESAATTLIPMGSSEDPFWQGSARTIFAEGAHRLRTEKGRS
HHHHHCCCCHHHHHHCCCCHHHHHHEEEECCCCCCCCCCCCCCEEEHHHHHHHHHHCCCC
YNLFLRTLLAITLDKLREFLAGTPAANLVDGKIEKTAISIRSVLTNYVKAMRYLQGIERK
HHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
GKPFTIRQWMQGVRDGGENGWLFITSNQKHHESLKPLISMWLSIAANSLLSMGENRYRRV
CCCEEHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEE
WFFYDELPSLHKLPSLPFIIAEARKFGGCFALGFQSYSQLEEIYGNKFAEAMYDLLNTKY
EEEHHCCCHHHCCCCCCHHHHHHHHHCCEEEEHHHHHHHHHHHHCCHHHHHHHHHHCCCC
FFRSPSASVAKFVEEDIGETVRKKFSEQTSFGADQVRDGISFGKDEERVNIVSYTDIQML
EECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCEEEEEECHHHHH
DNLDCFVTLPGNFPVVRMTLKFVKKEKIAESLPERDIQSSLDPEVDDEITQRLNETGKIF
CCCCEEEECCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCHHHHHHHHHHHHHH
DNVTPGVLPAVAAQAAATFSIVTHATAQPPTPVTVPAQAVQATDTGTETATTQPPAGRDQ
HCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCC
ELTMRDPRPAGVDENGVIYDEDLYAEYQKSAQTQQEAARREEVNINHHHQELGGDEPEFM
CCCCCCCCCCCCCCCCEEECHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCC
>Mature Secondary Structure 
SLNTRDVTQGGQVAFMRLRMFLQINNILSYWLILSFIVLTGSILFYRVSTQNLINGLMY
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHEEEECHHHHHHHHHH
WYATTIEPLHKFMTNPPTYKIQYYERVLHYNTKQILSDAYTVYCGQLFKNELIIAALSSM
HHHHHHHHHHHHHCCCCCEEHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IIVFVAGLLFYLYIGILGKKQSEDEITGGRTLSDNPKKVARMMRRQKVASDIIVDDLPII
HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCC
KDSEIQNFAMHGTVGSGKSTLMRKFLDQCRQRGDMVIIYDKGCTFVEEYYQEGRDIILNP
CCCCCHHHEEECCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHCCCCEECCC
LDQRCANWDMWEECQTLPDLESAATTLIPMGSSEDPFWQGSARTIFAEGAHRLRTEKGRS
HHHHHCCCCHHHHHHCCCCHHHHHHEEEECCCCCCCCCCCCCCEEEHHHHHHHHHHCCCC
YNLFLRTLLAITLDKLREFLAGTPAANLVDGKIEKTAISIRSVLTNYVKAMRYLQGIERK
HHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
GKPFTIRQWMQGVRDGGENGWLFITSNQKHHESLKPLISMWLSIAANSLLSMGENRYRRV
CCCEEHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEE
WFFYDELPSLHKLPSLPFIIAEARKFGGCFALGFQSYSQLEEIYGNKFAEAMYDLLNTKY
EEEHHCCCHHHCCCCCCHHHHHHHHHCCEEEEHHHHHHHHHHHHCCHHHHHHHHHHCCCC
FFRSPSASVAKFVEEDIGETVRKKFSEQTSFGADQVRDGISFGKDEERVNIVSYTDIQML
EECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCEEEEEECHHHHH
DNLDCFVTLPGNFPVVRMTLKFVKKEKIAESLPERDIQSSLDPEVDDEITQRLNETGKIF
CCCCEEEECCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCHHHHHHHHHHHHHH
DNVTPGVLPAVAAQAAATFSIVTHATAQPPTPVTVPAQAVQATDTGTETATTQPPAGRDQ
HCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCC
ELTMRDPRPAGVDENGVIYDEDLYAEYQKSAQTQQEAARREEVNINHHHQELGGDEPEFM
CCCCCCCCCCCCCCCCEEECHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 2680768; 7915817; 10464182; 3323526; 2164585; 2163400; 1618779; 10498725 [H]