Definition | Agrobacterium tumefaciens str. C58 chromosome circular, complete sequence. |
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Accession | NC_003062 |
Length | 2,841,580 |
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The map label for this gene is 159185444
Identifier: 159185444
GI number: 159185444
Start: 2556308
End: 2556790
Strand: Reverse
Name: 159185444
Synonym: Atu8180
Alternate gene names: NA
Gene position: 2556790-2556308 (Counterclockwise)
Preceding gene: 159185276
Following gene: 15889833
Centisome position: 89.98
GC content: 58.8
Gene sequence:
>483_bases ATGAGCAGACTGGACAGTTTCATTCGCCGTTTGAGCGCACAGCGCGATATCCTCAACCATGTCGAGGCCGATCTCGATCT GCCCGATCAGGGCGCGCTCATGGAAATCGGGCTTGGAAACGGGCGCACTTTCAATCACCTGCGGGAACTGTTTCCCAACC GCCGTATCATCGCTTTTGACAGGGCCATGGGTGCTCATGCCTCTTCCGTTCCGGCGGTAGAGGATCTCGTGATCGGTGAA ATCTCGCAAACCGCTCCGGCCTTCATCGGCACGGACGCGGCGATGGTGCATGCCGATATCGGCACGGGTTATCCGGAAAA GGACGCGGTTACGCTCACATGGTTGCCCGATCTTGCCGCGGGCATGCTGGCAAAAGGCGGTATCGCCATCAGCGGTCTGC CGCTCGACCATGCCATGCTGAAACCGCTGCCGGTGCCGGAAAGCGTGCCGACGGATCGCTATTTTCTCTATCGCAAGATT TGA
Upstream 100 bases:
>100_bases TATGCCGCGCTTAGCGACTGGGCGCCGCTGATCATCGATACACGAAATGTCTTCGCGCGCCGGGATATCGCCGCAAAACA CATCATCAAGGCCTGATATT
Downstream 100 bases:
>100_bases CGGTGGACCGCCCGACGACAAAAGCGCCGTGACTGTCTCATAGATAACGCTCGCTCTCTTCTCTTGAGAGCAGATACACT TTCATCTGCGAGTTTCGTCC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 160; Mature: 159
Protein sequence:
>160_residues MSRLDSFIRRLSAQRDILNHVEADLDLPDQGALMEIGLGNGRTFNHLRELFPNRRIIAFDRAMGAHASSVPAVEDLVIGE ISQTAPAFIGTDAAMVHADIGTGYPEKDAVTLTWLPDLAAGMLAKGGIAISGLPLDHAMLKPLPVPESVPTDRYFLYRKI
Sequences:
>Translated_160_residues MSRLDSFIRRLSAQRDILNHVEADLDLPDQGALMEIGLGNGRTFNHLRELFPNRRIIAFDRAMGAHASSVPAVEDLVIGE ISQTAPAFIGTDAAMVHADIGTGYPEKDAVTLTWLPDLAAGMLAKGGIAISGLPLDHAMLKPLPVPESVPTDRYFLYRKI >Mature_159_residues SRLDSFIRRLSAQRDILNHVEADLDLPDQGALMEIGLGNGRTFNHLRELFPNRRIIAFDRAMGAHASSVPAVEDLVIGEI SQTAPAFIGTDAAMVHADIGTGYPEKDAVTLTWLPDLAAGMLAKGGIAISGLPLDHAMLKPLPVPESVPTDRYFLYRKI
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 17387; Mature: 17256
Theoretical pI: Translated: 5.56; Mature: 5.56
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.8 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 3.1 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSRLDSFIRRLSAQRDILNHVEADLDLPDQGALMEIGLGNGRTFNHLRELFPNRRIIAFD CHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCHHHHHHHCCCCEEEEEC RAMGAHASSVPAVEDLVIGEISQTAPAFIGTDAAMVHADIGTGYPEKDAVTLTWLPDLAA CCCCCCCCCCCCHHHHHHHHHHHHCCCEECCCCEEEEEECCCCCCCCCCEEEEECCHHHH GMLAKGGIAISGLPLDHAMLKPLPVPESVPTDRYFLYRKI HHHHCCCEEEECCCCCHHHHCCCCCCCCCCCCCEEEEECC >Mature Secondary Structure SRLDSFIRRLSAQRDILNHVEADLDLPDQGALMEIGLGNGRTFNHLRELFPNRRIIAFD HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCHHHHHHHCCCCEEEEEC RAMGAHASSVPAVEDLVIGEISQTAPAFIGTDAAMVHADIGTGYPEKDAVTLTWLPDLAA CCCCCCCCCCCCHHHHHHHHHHHHCCCEECCCCEEEEEECCCCCCCCCCEEEEECCHHHH GMLAKGGIAISGLPLDHAMLKPLPVPESVPTDRYFLYRKI HHHHCCCEEEECCCCCHHHHCCCCCCCCCCCCCEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA