Definition | Agrobacterium tumefaciens str. C58 chromosome circular, complete sequence. |
---|---|
Accession | NC_003062 |
Length | 2,841,580 |
Click here to switch to the map view.
The map label for this gene is 159185439
Identifier: 159185439
GI number: 159185439
Start: 2179750
End: 2180250
Strand: Reverse
Name: 159185439
Synonym: Atu8172
Alternate gene names: NA
Gene position: 2180250-2179750 (Counterclockwise)
Preceding gene: 159185440
Following gene: 159185101
Centisome position: 76.73
GC content: 56.29
Gene sequence:
>501_bases ATGAGTCTGATAGAATTTGAAATTGAGCGTCAGTCCAATCCCGTGGACATGATCGAGATTGTCGCTGCCTCGAACGACTG GTCGTTCGAACGTTCCGGCGAAGACGAGATCGCCATGACGGTGGCCGGTCACTGGGCCGATTATCACGTTTCCTTCTCGT GGATGGAAGACTTCGAGGCGCTGCATCTGGCCTGCGCTTTCGACATCAAGGTGCCGGATCAGCGCGTCAACGAGGTCATT CGCCTGTTGTCGCAGGTCAATGGCCAGGTGTTGATGGGGCATTTCGATCTGTGGCGGCAGGAAGATGTGGTGATCTTCCG CCAGTCGCTGCTTCTGGCCGGTGGTGCCGAGCCGAACAACCAGCAGGTGGAAGTTCTGCTTTCCAGCGCGCTTGAGGCCT GCGAGCAATATTATCAGGCATTCCAGTTCGTCGTCTGGTCGGGGCTGGATGCCAAAAGTGCAATCGAAGCGGTCATGTTC GAGACCGTTGGAGAAGCTTGA
Upstream 100 bases:
>100_bases TGGTGTCGGGCAATCGTCTCAAATGTTTATCCCGGTTCGTATGTGCGTTTTGTGCCCGGCGTTCAAAACACGACATTCTG GCCGGCTGAGAAGGTGCCGC
Downstream 100 bases:
>100_bases GCATGGTGTACAAGGCTTCCGGTCCGCTCGTCCTCGTGGGGGCCGGCAATATGGGCGGCGCCATGCTTTCGGGCTGGCTG AAAAAGGGTGTGCCGGGATC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 166; Mature: 165
Protein sequence:
>166_residues MSLIEFEIERQSNPVDMIEIVAASNDWSFERSGEDEIAMTVAGHWADYHVSFSWMEDFEALHLACAFDIKVPDQRVNEVI RLLSQVNGQVLMGHFDLWRQEDVVIFRQSLLLAGGAEPNNQQVEVLLSSALEACEQYYQAFQFVVWSGLDAKSAIEAVMF ETVGEA
Sequences:
>Translated_166_residues MSLIEFEIERQSNPVDMIEIVAASNDWSFERSGEDEIAMTVAGHWADYHVSFSWMEDFEALHLACAFDIKVPDQRVNEVI RLLSQVNGQVLMGHFDLWRQEDVVIFRQSLLLAGGAEPNNQQVEVLLSSALEACEQYYQAFQFVVWSGLDAKSAIEAVMF ETVGEA >Mature_165_residues SLIEFEIERQSNPVDMIEIVAASNDWSFERSGEDEIAMTVAGHWADYHVSFSWMEDFEALHLACAFDIKVPDQRVNEVIR LLSQVNGQVLMGHFDLWRQEDVVIFRQSLLLAGGAEPNNQQVEVLLSSALEACEQYYQAFQFVVWSGLDAKSAIEAVMFE TVGEA
Specific function: Unknown
COG id: COG5465
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 18793; Mature: 18662
Theoretical pI: Translated: 3.92; Mature: 3.92
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 3.6 %Met (Translated Protein) 4.8 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSLIEFEIERQSNPVDMIEIVAASNDWSFERSGEDEIAMTVAGHWADYHVSFSWMEDFEA CCCEEEEECCCCCCCCEEEEEECCCCCCCCCCCCCCEEEEEECCCEEEEEEEHHHHHHHH LHLACAFDIKVPDQRVNEVIRLLSQVNGQVLMGHFDLWRQEDVVIFRQSLLLAGGAEPNN HHEEEEEECCCCHHHHHHHHHHHHHCCCEEEEEEHHHCCCCCHHHHHHHHHHCCCCCCCC QQVEVLLSSALEACEQYYQAFQFVVWSGLDAKSAIEAVMFETVGEA HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC >Mature Secondary Structure SLIEFEIERQSNPVDMIEIVAASNDWSFERSGEDEIAMTVAGHWADYHVSFSWMEDFEA CCEEEEECCCCCCCCEEEEEECCCCCCCCCCCCCCEEEEEECCCEEEEEEEHHHHHHHH LHLACAFDIKVPDQRVNEVIRLLSQVNGQVLMGHFDLWRQEDVVIFRQSLLLAGGAEPNN HHEEEEEECCCCHHHHHHHHHHHHHCCCEEEEEEHHHCCCCCHHHHHHHHHHCCCCCCCC QQVEVLLSSALEACEQYYQAFQFVVWSGLDAKSAIEAVMFETVGEA HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA