Definition | Agrobacterium tumefaciens str. C58 chromosome circular, complete sequence. |
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Accession | NC_003062 |
Length | 2,841,580 |
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The map label for this gene is 159185394
Identifier: 159185394
GI number: 159185394
Start: 2818175
End: 2818996
Strand: Reverse
Name: 159185394
Synonym: Atu2815
Alternate gene names: NA
Gene position: 2818996-2818175 (Counterclockwise)
Preceding gene: 159185395
Following gene: 15890061
Centisome position: 99.21
GC content: 60.34
Gene sequence:
>822_bases ATGCTCATCGACGCCCACCAGCATTTCTGGCTGATGAAGGATCGCGCCGGGCAATGGCCGCCGCCATCGCTGGCCGCTAT CTACCGGGATTTTCTTCCTACCGATCTGTCGCCATTGCTGACGGCCGCCGGGGTTTCTGGCACGGTGCTCGTGCAGACGA TGGAGACGGCGGCCGACACGGATTTCATGCTGGAGCTTGCTGAAAACACCGATTTCATCAAGGGCGTTGTCGGCTGGGTG GATATGAAGTCTGCCGAAGTGACCGCGGAAATTGCCCGCCGGGCGAAACATCCAGCCTTCAAGGGCGTGCGCCCCATGCT TCAGGGCATGGAAGATGTCGCCTGGATAGACGATGCCGCGCTGAATGCTGCCGTGGAGGCGCTGGTGAAGCACGGTCTGG TGTTCGATGCGCTGGTCCTGCCGCCCAATCTGCCACATCTTCTCTCCTTTGCCAGCAAGCATCCAGAGTTGCCTGTTGTT ATCGATCATGGTGCGAAGCCTCTGATTGCCACCGGTCACTATCGTGACTGGCGGCGTAATATGGCGGCTCTTGCAGCCCG TCCCAATGTCCATTGCAAGCTATCCGGCCTGCTGACCGAGCGCGGCGAGCAGCGTCCGGAAGCGGTGCGGCCCTATGCCG AGACCATTCTGGAACTATTCGGCGGTGATCGCGTGATTTTCGGCAGTGACTGGCCGGTGCTGCGCCTTGCGGGCGACTTT CAGGGCTGGCTGGATTTCTGCCGCGATATCGTGCCGGCGAAGGACCATGCGGCAGTTTTCGGCGGCAACGCCATTCGTTT TTACTCCCTTACTGACAGGTGA
Upstream 100 bases:
>100_bases TGGTTCGAGCAGTCTATCCCGGATGAATTCTGGTCCGAGCTGCACAAGCGTGGCCTGATTGCTGAAGGTGCGCCTGTGCC CGGCGGAAAGGCCTGAGGCA
Downstream 100 bases:
>100_bases TGCATGCTGGCGATTTTCTGTGACACTCCCGGTCAATTAACCGCCAAGGATCTGCCGAACCCCGTGCGCGGCGAAGGTGA AGTCCTGGTACGTATTCGCC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 273; Mature: 273
Protein sequence:
>273_residues MLIDAHQHFWLMKDRAGQWPPPSLAAIYRDFLPTDLSPLLTAAGVSGTVLVQTMETAADTDFMLELAENTDFIKGVVGWV DMKSAEVTAEIARRAKHPAFKGVRPMLQGMEDVAWIDDAALNAAVEALVKHGLVFDALVLPPNLPHLLSFASKHPELPVV IDHGAKPLIATGHYRDWRRNMAALAARPNVHCKLSGLLTERGEQRPEAVRPYAETILELFGGDRVIFGSDWPVLRLAGDF QGWLDFCRDIVPAKDHAAVFGGNAIRFYSLTDR
Sequences:
>Translated_273_residues MLIDAHQHFWLMKDRAGQWPPPSLAAIYRDFLPTDLSPLLTAAGVSGTVLVQTMETAADTDFMLELAENTDFIKGVVGWV DMKSAEVTAEIARRAKHPAFKGVRPMLQGMEDVAWIDDAALNAAVEALVKHGLVFDALVLPPNLPHLLSFASKHPELPVV IDHGAKPLIATGHYRDWRRNMAALAARPNVHCKLSGLLTERGEQRPEAVRPYAETILELFGGDRVIFGSDWPVLRLAGDF QGWLDFCRDIVPAKDHAAVFGGNAIRFYSLTDR >Mature_273_residues MLIDAHQHFWLMKDRAGQWPPPSLAAIYRDFLPTDLSPLLTAAGVSGTVLVQTMETAADTDFMLELAENTDFIKGVVGWV DMKSAEVTAEIARRAKHPAFKGVRPMLQGMEDVAWIDDAALNAAVEALVKHGLVFDALVLPPNLPHLLSFASKHPELPVV IDHGAKPLIATGHYRDWRRNMAALAARPNVHCKLSGLLTERGEQRPEAVRPYAETILELFGGDRVIFGSDWPVLRLAGDF QGWLDFCRDIVPAKDHAAVFGGNAIRFYSLTDR
Specific function: Unknown
COG id: COG3618
COG function: function code R; Predicted metal-dependent hydrolase of the TIM-barrel fold
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006992 [H]
Pfam domain/function: PF04909 Amidohydro_2 [H]
EC number: NA
Molecular weight: Translated: 30152; Mature: 30152
Theoretical pI: Translated: 6.17; Mature: 6.17
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLIDAHQHFWLMKDRAGQWPPPSLAAIYRDFLPTDLSPLLTAAGVSGTVLVQTMETAADT CEECCCCCEEEECCCCCCCCCHHHHHHHHHHCCCCHHHHHHHCCCCCEEEEEEHHHHCCH DFMLELAENTDFIKGVVGWVDMKSAEVTAEIARRAKHPAFKGVRPMLQGMEDVAWIDDAA HHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHCHHHHHHHHHHH LNAAVEALVKHGLVFDALVLPPNLPHLLSFASKHPELPVVIDHGAKPLIATGHYRDWRRN HHHHHHHHHHCCHHHEEEECCCCCHHHHHHHHCCCCCCEEECCCCCCEEECCCCHHHHHH MAALAARPNVHCKLSGLLTERGEQRPEAVRPYAETILELFGGDRVIFGSDWPVLRLAGDF HHHHHCCCCCEEEEHHHHHHCCCCCCHHHHHHHHHHHHHHCCCEEEECCCCCEEEECCCH QGWLDFCRDIVPAKDHAAVFGGNAIRFYSLTDR HHHHHHHHHHCCCCCCCEEECCCEEEEEEECCC >Mature Secondary Structure MLIDAHQHFWLMKDRAGQWPPPSLAAIYRDFLPTDLSPLLTAAGVSGTVLVQTMETAADT CEECCCCCEEEECCCCCCCCCHHHHHHHHHHCCCCHHHHHHHCCCCCEEEEEEHHHHCCH DFMLELAENTDFIKGVVGWVDMKSAEVTAEIARRAKHPAFKGVRPMLQGMEDVAWIDDAA HHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHCHHHHHHHHHHH LNAAVEALVKHGLVFDALVLPPNLPHLLSFASKHPELPVVIDHGAKPLIATGHYRDWRRN HHHHHHHHHHCCHHHEEEECCCCCHHHHHHHHCCCCCCEEECCCCCCEEECCCCHHHHHH MAALAARPNVHCKLSGLLTERGEQRPEAVRPYAETILELFGGDRVIFGSDWPVLRLAGDF HHHHHCCCCCEEEEHHHHHHCCCCCCHHHHHHHHHHHHHHCCCEEEECCCCCEEEECCCH QGWLDFCRDIVPAKDHAAVFGGNAIRFYSLTDR HHHHHHHHHHCCCCCCCEEECCCEEEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9163424 [H]