Definition | Agrobacterium tumefaciens str. C58 chromosome circular, complete sequence. |
---|---|
Accession | NC_003062 |
Length | 2,841,580 |
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The map label for this gene is phbB [H]
Identifier: 159185371
GI number: 159185371
Start: 2775231
End: 2775956
Strand: Direct
Name: phbB [H]
Synonym: Atu2770
Alternate gene names: 159185371
Gene position: 2775231-2775956 (Clockwise)
Preceding gene: 15890018
Following gene: 159185372
Centisome position: 97.67
GC content: 60.74
Gene sequence:
>726_bases ATGAGCCGGGTTGCGTTGATTTCCGGCGGGACGAGCGGCATAGGTGCCGCAATCGCCCGCGCCCTTCAGGCAGCCGGCTA CCGCGTGGCCGTCAACTACGCCTTCACGACGGACAGGGCCGAAGCATTCCAGAAAGAAACCGGCATCCCGGCGTTTCAGT GGGATGTTCGCGATTATGACGCCTGCGTCGACGGCATAACGAAGGTTGAGGAAACCTTCGGACCGGTCGAAGTGCTCGTC AATAATGCGGGCATCACCCGCGACGCGATGTTTCACAAGATGTCGCCGCAGCAATGGCGAGAGGTGATCGACACCAACCT CACCGGCGTCTTCAACATGACACACCCCGTCTGGCCGGGCATGCGCGAGCGCGGCTTCGGCCGCATCGTCAACATTTCCT CCATCAACGGCCAGAAAGGACAGGCGGGACAGGTCAATTATTCCGCCTCGAAAGCGGGTGATATCGGCTTCACCAAGGCG CTTGCCCAGGAAGGCGCCAGCCGTAACATCACCGTCAACGCCATCTGCCCCGGCTATATCGGCACGGAGATGGTGCGGGC GATACCGGAAAAGGTTCTGGCGGAACGGATCGTGCCGCAAATTCCCGTCGGACGCTTGGGTGAACCGGAAGAAATCGCGC GTTGCGTCCTGTTTCTGGTGTCGGACGAGGCGGGTTTCATCACCGGCTCCACGATGACAGCCAATGGCGGGCAATATTTC GCCTGA
Upstream 100 bases:
>100_bases GGCCGTATTTCTATGGCCGTTGGGCACAACGAACGAGTTCCGCAATAGTTGGGAGCGCTAGCATATTGAGGCGCTTCGTT GATAGGTCATGGAGGCCGAT
Downstream 100 bases:
>100_bases GATAGCTCGTCCTCCACATCCGGCCCGACGCTGATGATAAACTTTTCGTGATAATGATGCTGGATAGTTTTGTTGCGCAC AAAAACTTGAACGCAGAATA
Product: acetoacetyl CoA reductase; poly-beta-hydroxybutyrate biosynthesis
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 241; Mature: 240
Protein sequence:
>241_residues MSRVALISGGTSGIGAAIARALQAAGYRVAVNYAFTTDRAEAFQKETGIPAFQWDVRDYDACVDGITKVEETFGPVEVLV NNAGITRDAMFHKMSPQQWREVIDTNLTGVFNMTHPVWPGMRERGFGRIVNISSINGQKGQAGQVNYSASKAGDIGFTKA LAQEGASRNITVNAICPGYIGTEMVRAIPEKVLAERIVPQIPVGRLGEPEEIARCVLFLVSDEAGFITGSTMTANGGQYF A
Sequences:
>Translated_241_residues MSRVALISGGTSGIGAAIARALQAAGYRVAVNYAFTTDRAEAFQKETGIPAFQWDVRDYDACVDGITKVEETFGPVEVLV NNAGITRDAMFHKMSPQQWREVIDTNLTGVFNMTHPVWPGMRERGFGRIVNISSINGQKGQAGQVNYSASKAGDIGFTKA LAQEGASRNITVNAICPGYIGTEMVRAIPEKVLAERIVPQIPVGRLGEPEEIARCVLFLVSDEAGFITGSTMTANGGQYF A >Mature_240_residues SRVALISGGTSGIGAAIARALQAAGYRVAVNYAFTTDRAEAFQKETGIPAFQWDVRDYDACVDGITKVEETFGPVEVLVN NAGITRDAMFHKMSPQQWREVIDTNLTGVFNMTHPVWPGMRERGFGRIVNISSINGQKGQAGQVNYSASKAGDIGFTKAL AQEGASRNITVNAICPGYIGTEMVRAIPEKVLAERIVPQIPVGRLGEPEEIARCVLFLVSDEAGFITGSTMTANGGQYFA
Specific function: Fatty acid biosynthesis pathway; first reduction step. [C]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI15277342, Length=255, Percent_Identity=38.8235294117647, Blast_Score=155, Evalue=3e-38, Organism=Homo sapiens, GI40254992, Length=239, Percent_Identity=36.8200836820084, Blast_Score=142, Evalue=3e-34, Organism=Homo sapiens, GI32483357, Length=248, Percent_Identity=34.2741935483871, Blast_Score=110, Evalue=9e-25, Organism=Homo sapiens, GI4504505, Length=234, Percent_Identity=32.4786324786325, Blast_Score=108, Evalue=5e-24, Organism=Homo sapiens, GI7705925, Length=239, Percent_Identity=31.7991631799163, Blast_Score=107, Evalue=7e-24, Organism=Homo sapiens, GI19923817, Length=251, Percent_Identity=31.4741035856574, Blast_Score=107, Evalue=1e-23, Organism=Homo sapiens, GI10190704, Length=247, Percent_Identity=31.5789473684211, Blast_Score=106, Evalue=2e-23, Organism=Homo sapiens, GI4758504, Length=251, Percent_Identity=33.0677290836653, Blast_Score=94, Evalue=1e-19, Organism=Homo sapiens, GI31542939, Length=258, Percent_Identity=30.6201550387597, Blast_Score=92, Evalue=4e-19, Organism=Homo sapiens, GI59889578, Length=235, Percent_Identity=31.9148936170213, Blast_Score=92, Evalue=5e-19, Organism=Homo sapiens, GI126723750, Length=249, Percent_Identity=28.9156626506024, Blast_Score=89, Evalue=2e-18, Organism=Homo sapiens, GI4503301, Length=204, Percent_Identity=28.921568627451, Blast_Score=86, Evalue=4e-17, Organism=Homo sapiens, GI109715829, Length=241, Percent_Identity=27.8008298755187, Blast_Score=85, Evalue=6e-17, Organism=Homo sapiens, GI20149619, Length=191, Percent_Identity=30.8900523560209, Blast_Score=82, Evalue=3e-16, Organism=Homo sapiens, GI66933014, Length=169, Percent_Identity=29.585798816568, Blast_Score=81, Evalue=7e-16, Organism=Homo sapiens, GI83715985, Length=252, Percent_Identity=31.3492063492063, Blast_Score=81, Evalue=1e-15, Organism=Homo sapiens, GI5031737, Length=244, Percent_Identity=30.327868852459, Blast_Score=80, Evalue=2e-15, Organism=Homo sapiens, GI157739938, Length=193, Percent_Identity=25.9067357512953, Blast_Score=79, Evalue=5e-15, Organism=Homo sapiens, GI7706318, Length=233, Percent_Identity=29.1845493562232, Blast_Score=78, Evalue=5e-15, Organism=Homo sapiens, GI226371731, Length=193, Percent_Identity=32.1243523316062, Blast_Score=77, Evalue=1e-14, Organism=Homo sapiens, GI7657478, Length=192, Percent_Identity=31.25, Blast_Score=73, Evalue=2e-13, Organism=Homo sapiens, GI4503817, Length=225, Percent_Identity=26.6666666666667, Blast_Score=73, Evalue=3e-13, Organism=Homo sapiens, GI7705855, Length=194, Percent_Identity=27.8350515463918, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI224922801, Length=169, Percent_Identity=33.1360946745562, Blast_Score=69, Evalue=3e-12, Organism=Homo sapiens, GI142976729, Length=217, Percent_Identity=24.8847926267281, Blast_Score=67, Evalue=1e-11, Organism=Homo sapiens, GI33667109, Length=195, Percent_Identity=31.2820512820513, Blast_Score=66, Evalue=3e-11, Organism=Homo sapiens, GI210032112, Length=120, Percent_Identity=30, Blast_Score=65, Evalue=4e-11, Organism=Escherichia coli, GI1787335, Length=240, Percent_Identity=43.75, Blast_Score=199, Evalue=2e-52, Organism=Escherichia coli, GI87082100, Length=250, Percent_Identity=36.4, Blast_Score=138, Evalue=3e-34, Organism=Escherichia coli, GI1790717, Length=242, Percent_Identity=34.297520661157, Blast_Score=129, Evalue=1e-31, Organism=Escherichia coli, GI2367175, Length=245, Percent_Identity=34.6938775510204, Blast_Score=122, Evalue=2e-29, Organism=Escherichia coli, GI87082160, Length=242, Percent_Identity=31.8181818181818, Blast_Score=114, Evalue=6e-27, Organism=Escherichia coli, GI1789208, Length=244, Percent_Identity=31.1475409836066, Blast_Score=114, Evalue=8e-27, Organism=Escherichia coli, GI1788459, Length=247, Percent_Identity=30.7692307692308, Blast_Score=109, Evalue=1e-25, Organism=Escherichia coli, GI2367365, Length=235, Percent_Identity=32.7659574468085, Blast_Score=100, Evalue=9e-23, Organism=Escherichia coli, GI1789057, Length=258, Percent_Identity=27.906976744186, Blast_Score=92, Evalue=3e-20, Organism=Escherichia coli, GI1787905, Length=248, Percent_Identity=29.8387096774194, Blast_Score=90, Evalue=2e-19, Organism=Escherichia coli, GI1786812, Length=241, Percent_Identity=28.2157676348548, Blast_Score=86, Evalue=3e-18, Organism=Escherichia coli, GI1787820, Length=181, Percent_Identity=32.5966850828729, Blast_Score=84, Evalue=7e-18, Organism=Escherichia coli, GI1789378, Length=253, Percent_Identity=26.0869565217391, Blast_Score=73, Evalue=1e-14, Organism=Escherichia coli, GI1787526, Length=247, Percent_Identity=27.5303643724696, Blast_Score=65, Evalue=3e-12, Organism=Caenorhabditis elegans, GI25147288, Length=243, Percent_Identity=43.6213991769547, Blast_Score=180, Evalue=5e-46, Organism=Caenorhabditis elegans, GI17555706, Length=240, Percent_Identity=43.3333333333333, Blast_Score=170, Evalue=7e-43, Organism=Caenorhabditis elegans, GI17560676, Length=249, Percent_Identity=33.7349397590361, Blast_Score=118, Evalue=3e-27, Organism=Caenorhabditis elegans, GI17568967, Length=231, Percent_Identity=33.3333333333333, Blast_Score=114, Evalue=5e-26, Organism=Caenorhabditis elegans, GI17561402, Length=251, Percent_Identity=32.6693227091633, Blast_Score=107, Evalue=5e-24, Organism=Caenorhabditis elegans, GI17538182, Length=247, Percent_Identity=30.3643724696356, Blast_Score=96, Evalue=2e-20, Organism=Caenorhabditis elegans, GI115534694, Length=240, Percent_Identity=30.8333333333333, Blast_Score=95, Evalue=3e-20, Organism=Caenorhabditis elegans, GI71994600, Length=248, Percent_Identity=30.6451612903226, Blast_Score=95, Evalue=3e-20, Organism=Caenorhabditis elegans, GI17536025, Length=247, Percent_Identity=31.1740890688259, Blast_Score=93, Evalue=1e-19, Organism=Caenorhabditis elegans, GI17536651, Length=249, Percent_Identity=32.1285140562249, Blast_Score=92, Evalue=3e-19, Organism=Caenorhabditis elegans, GI71994604, Length=247, Percent_Identity=27.9352226720648, Blast_Score=91, Evalue=6e-19, Organism=Caenorhabditis elegans, GI193203115, Length=236, Percent_Identity=29.2372881355932, Blast_Score=89, Evalue=2e-18, Organism=Caenorhabditis elegans, GI193203117, Length=236, Percent_Identity=29.2372881355932, Blast_Score=89, Evalue=2e-18, Organism=Caenorhabditis elegans, GI17561272, Length=196, Percent_Identity=33.1632653061224, Blast_Score=87, Evalue=1e-17, Organism=Caenorhabditis elegans, GI17560332, Length=263, Percent_Identity=30.0380228136882, Blast_Score=80, Evalue=1e-15, Organism=Caenorhabditis elegans, GI17538486, Length=260, Percent_Identity=28.0769230769231, Blast_Score=79, Evalue=2e-15, Organism=Caenorhabditis elegans, GI17562904, Length=258, Percent_Identity=28.2945736434109, Blast_Score=79, Evalue=2e-15, Organism=Caenorhabditis elegans, GI17560150, Length=256, Percent_Identity=27.734375, Blast_Score=78, Evalue=4e-15, Organism=Caenorhabditis elegans, GI17562990, Length=253, Percent_Identity=28.8537549407115, Blast_Score=78, Evalue=5e-15, Organism=Caenorhabditis elegans, GI17538480, Length=260, Percent_Identity=28.0769230769231, Blast_Score=77, Evalue=8e-15, Organism=Caenorhabditis elegans, GI17564282, Length=197, Percent_Identity=26.3959390862944, Blast_Score=75, Evalue=3e-14, Organism=Caenorhabditis elegans, GI17562910, Length=264, Percent_Identity=27.2727272727273, Blast_Score=74, Evalue=1e-13, Organism=Caenorhabditis elegans, GI17508651, Length=248, Percent_Identity=25.8064516129032, Blast_Score=73, Evalue=2e-13, Organism=Caenorhabditis elegans, GI72000259, Length=257, Percent_Identity=26.0700389105058, Blast_Score=72, Evalue=2e-13, Organism=Caenorhabditis elegans, GI17544670, Length=263, Percent_Identity=24.3346007604563, Blast_Score=72, Evalue=2e-13, Organism=Caenorhabditis elegans, GI17562906, Length=257, Percent_Identity=26.4591439688716, Blast_Score=72, Evalue=2e-13, Organism=Caenorhabditis elegans, GI193204405, Length=257, Percent_Identity=27.6264591439689, Blast_Score=71, Evalue=4e-13, Organism=Caenorhabditis elegans, GI17567345, Length=190, Percent_Identity=27.3684210526316, Blast_Score=70, Evalue=9e-13, Organism=Caenorhabditis elegans, GI17559104, Length=257, Percent_Identity=27.6264591439689, Blast_Score=69, Evalue=2e-12, Organism=Caenorhabditis elegans, GI17508895, Length=195, Percent_Identity=25.6410256410256, Blast_Score=69, Evalue=2e-12, Organism=Caenorhabditis elegans, GI193203119, Length=129, Percent_Identity=31.7829457364341, Blast_Score=69, Evalue=2e-12, Organism=Caenorhabditis elegans, GI17551412, Length=262, Percent_Identity=26.7175572519084, Blast_Score=69, Evalue=3e-12, Organism=Caenorhabditis elegans, GI17531453, Length=261, Percent_Identity=26.4367816091954, Blast_Score=69, Evalue=3e-12, Organism=Caenorhabditis elegans, GI17563726, Length=268, Percent_Identity=27.2388059701493, Blast_Score=68, Evalue=5e-12, Organism=Caenorhabditis elegans, GI17562908, Length=257, Percent_Identity=26.0700389105058, Blast_Score=66, Evalue=1e-11, Organism=Caenorhabditis elegans, GI17565030, Length=260, Percent_Identity=28.4615384615385, Blast_Score=64, Evalue=6e-11, Organism=Saccharomyces cerevisiae, GI6322861, Length=236, Percent_Identity=36.0169491525424, Blast_Score=127, Evalue=1e-30, Organism=Saccharomyces cerevisiae, GI6324126, Length=247, Percent_Identity=26.7206477732794, Blast_Score=88, Evalue=1e-18, Organism=Saccharomyces cerevisiae, GI6320089, Length=206, Percent_Identity=29.126213592233, Blast_Score=74, Evalue=1e-14, Organism=Saccharomyces cerevisiae, GI6323882, Length=194, Percent_Identity=28.8659793814433, Blast_Score=69, Evalue=9e-13, Organism=Drosophila melanogaster, GI24639444, Length=245, Percent_Identity=36.734693877551, Blast_Score=137, Evalue=6e-33, Organism=Drosophila melanogaster, GI23397609, Length=246, Percent_Identity=33.739837398374, Blast_Score=119, Evalue=2e-27, Organism=Drosophila melanogaster, GI18859837, Length=230, Percent_Identity=36.0869565217391, Blast_Score=115, Evalue=3e-26, Organism=Drosophila melanogaster, GI21357041, Length=249, Percent_Identity=33.7349397590361, Blast_Score=113, Evalue=1e-25, Organism=Drosophila melanogaster, GI21355319, Length=252, Percent_Identity=32.5396825396825, Blast_Score=108, Evalue=4e-24, Organism=Drosophila melanogaster, GI24644339, Length=247, Percent_Identity=31.9838056680162, Blast_Score=107, Evalue=8e-24, Organism=Drosophila melanogaster, GI24643142, Length=241, Percent_Identity=29.4605809128631, Blast_Score=101, Evalue=5e-22, Organism=Drosophila melanogaster, GI28571526, Length=252, Percent_Identity=30.1587301587302, Blast_Score=94, Evalue=6e-20, Organism=Drosophila melanogaster, GI24641232, Length=236, Percent_Identity=30.9322033898305, Blast_Score=91, Evalue=8e-19, Organism=Drosophila melanogaster, GI17737361, Length=240, Percent_Identity=31.6666666666667, Blast_Score=87, Evalue=1e-17, Organism=Drosophila melanogaster, GI21358495, Length=191, Percent_Identity=30.8900523560209, Blast_Score=86, Evalue=2e-17, Organism=Drosophila melanogaster, GI116007234, Length=200, Percent_Identity=32, Blast_Score=81, Evalue=6e-16, Organism=Drosophila melanogaster, GI116007236, Length=198, Percent_Identity=32.3232323232323, Blast_Score=81, Evalue=8e-16, Organism=Drosophila melanogaster, GI24649181, Length=187, Percent_Identity=30.4812834224599, Blast_Score=79, Evalue=3e-15, Organism=Drosophila melanogaster, GI24644337, Length=171, Percent_Identity=32.1637426900585, Blast_Score=78, Evalue=5e-15, Organism=Drosophila melanogaster, GI281364494, Length=207, Percent_Identity=32.8502415458937, Blast_Score=77, Evalue=1e-14, Organism=Drosophila melanogaster, GI28571387, Length=260, Percent_Identity=29.6153846153846, Blast_Score=75, Evalue=4e-14, Organism=Drosophila melanogaster, GI24641388, Length=203, Percent_Identity=30.0492610837438, Blast_Score=74, Evalue=1e-13, Organism=Drosophila melanogaster, GI116007232, Length=177, Percent_Identity=31.638418079096, Blast_Score=73, Evalue=2e-13, Organism=Drosophila melanogaster, GI221331218, Length=241, Percent_Identity=28.6307053941909, Blast_Score=72, Evalue=4e-13, Organism=Drosophila melanogaster, GI116007238, Length=175, Percent_Identity=32.5714285714286, Blast_Score=72, Evalue=5e-13, Organism=Drosophila melanogaster, GI24665243, Length=241, Percent_Identity=28.6307053941909, Blast_Score=71, Evalue=5e-13, Organism=Drosophila melanogaster, GI161076933, Length=189, Percent_Identity=29.1005291005291, Blast_Score=69, Evalue=2e-12, Organism=Drosophila melanogaster, GI24584748, Length=189, Percent_Identity=29.1005291005291, Blast_Score=69, Evalue=2e-12, Organism=Drosophila melanogaster, GI24581726, Length=164, Percent_Identity=27.4390243902439, Blast_Score=69, Evalue=3e-12, Organism=Drosophila melanogaster, GI221331216, Length=242, Percent_Identity=28.5123966942149, Blast_Score=69, Evalue=3e-12, Organism=Drosophila melanogaster, GI24665247, Length=242, Percent_Identity=28.5123966942149, Blast_Score=69, Evalue=3e-12, Organism=Drosophila melanogaster, GI21356301, Length=230, Percent_Identity=26.5217391304348, Blast_Score=67, Evalue=9e-12, Organism=Drosophila melanogaster, GI24648693, Length=205, Percent_Identity=30.2439024390244, Blast_Score=66, Evalue=2e-11, Organism=Drosophila melanogaster, GI21355889, Length=205, Percent_Identity=30.2439024390244, Blast_Score=66, Evalue=2e-11, Organism=Drosophila melanogaster, GI24640442, Length=205, Percent_Identity=29.2682926829268, Blast_Score=65, Evalue=4e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011283 - InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 - InterPro: IPR020904 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: =1.1.1.36 [H]
Molecular weight: Translated: 25882; Mature: 25751
Theoretical pI: Translated: 5.85; Mature: 5.85
Prosite motif: PS00061 ADH_SHORT
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSRVALISGGTSGIGAAIARALQAAGYRVAVNYAFTTDRAEAFQKETGIPAFQWDVRDYD CCEEEEEECCCCHHHHHHHHHHHHCCEEEEEEEEEECHHHHHHHHHCCCCEEEECCHHHH ACVDGITKVEETFGPVEVLVNNAGITRDAMFHKMSPQQWREVIDTNLTGVFNMTHPVWPG HHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHCCCHHHHHHHHHCCCCEEEECCCCCCCC MRERGFGRIVNISSINGQKGQAGQVNYSASKAGDIGFTKALAQEGASRNITVNAICPGYI HHHCCCCEEEEEECCCCCCCCCCCEECCCCCCCCCHHHHHHHHCCCCCCEEEEEECCCHH GTEMVRAIPEKVLAERIVPQIPVGRLGEPEEIARCVLFLVSDEAGFITGSTMTANGGQYF HHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHEECCCCEEECCEEECCCCCCC A C >Mature Secondary Structure SRVALISGGTSGIGAAIARALQAAGYRVAVNYAFTTDRAEAFQKETGIPAFQWDVRDYD CEEEEEECCCCHHHHHHHHHHHHCCEEEEEEEEEECHHHHHHHHHCCCCEEEECCHHHH ACVDGITKVEETFGPVEVLVNNAGITRDAMFHKMSPQQWREVIDTNLTGVFNMTHPVWPG HHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHCCCHHHHHHHHHCCCCEEEECCCCCCCC MRERGFGRIVNISSINGQKGQAGQVNYSASKAGDIGFTKALAQEGASRNITVNAICPGYI HHHCCCCEEEEEECCCCCCCCCCCEECCCCCCCCCHHHHHHHHCCCCCCEEEEEECCCHH GTEMVRAIPEKVLAERIVPQIPVGRLGEPEEIARCVLFLVSDEAGFITGSTMTANGGQYF HHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHEECCCCEEECCEEECCCCCCC A C
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 7582015; 11481430 [H]