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The map label for this gene is vanR [H]

Identifier: 159185350

GI number: 159185350

Start: 2715286

End: 2716023

Strand: Reverse

Name: vanR [H]

Synonym: Atu2727

Alternate gene names: 159185350

Gene position: 2716023-2715286 (Counterclockwise)

Preceding gene: 159185352

Following gene: 159185349

Centisome position: 95.58

GC content: 58.67

Gene sequence:

>738_bases
ATGCATGATATTCTTCAATTCATCTCTGCGTGTTCTCAGGCAGGAAGCGCCGACCGCGTTCGCTCCGAATTTGCCAAGCT
CATTCGCGAATATGGCTTCGAGTATTTTCTCGTCAGCAGACGCATGACCGGGGAACTTGCCTCTGCCGGCCAGATTCTCG
CAGAGCATCTTCCTGACGGCTGGCTGGAGGTATACAGGGCCAAGAAATACAATCTCGTTGATCCCGTCCGCAAGGTGATC
GGCATGGTGCACAAGCCGTTTCAGTGGAAAGAAGCGCTTGAGGGCCTGCCGCGTGCGATGCATCGCAAAAGGGCAAGCGT
GTTTTTTCACGATGCCGGGCGATACGGCCTGCAGGGCGGTTATGCCTTTCCCGTGCATGGTCGCGCGGGATTTATCGGTG
CGGTCTTCATTGGTGGCCCAGATCGGCAATTGCCCTCCCTGCACGTCGAACTCCTCGATGCGGCCACCCGCGCCGTCTTC
TGGCGGCTGCTCGATCTTTCCGGGCAGGCCCATGGCTTCAGCAACGCCCCTGACGTTTCCGCCCTCGAACTCACGCGACG
CGAAATGGAGGTGCTGGCGCTGATGGCGGATGGCATGACCTCCACCGAAATCGGACGCCAGCTATCGATCTCCAACCACA
CGGTCGACTGGTACATTAACGGAATCCAGCGACGTTTCAGCGCCAAGAACCGGCAGCACACCGTAGCGCTTGCTTTTCGC
CACGGCCTGTTGAGCTAG

Upstream 100 bases:

>100_bases
ATGTTCAATCTGAACCGACCGGCGCCCGAGTAACATGACGTCATCGCGGGACCTTGTCCTCGTGTCATCCCTTCAAGCCA
AGCCCGGACCCCGTGTCTTT

Downstream 100 bases:

>100_bases
CGCAAACAGGACAGTTCTCGCCGGAATTGCCCTTTCCAAGACTTGGTTTTGCTGCTTTATTCCGCAGTGCAGCAGAATTC
TGTTTTGGCGTGTGGGGAGA

Product: LuxR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 245; Mature: 245

Protein sequence:

>245_residues
MHDILQFISACSQAGSADRVRSEFAKLIREYGFEYFLVSRRMTGELASAGQILAEHLPDGWLEVYRAKKYNLVDPVRKVI
GMVHKPFQWKEALEGLPRAMHRKRASVFFHDAGRYGLQGGYAFPVHGRAGFIGAVFIGGPDRQLPSLHVELLDAATRAVF
WRLLDLSGQAHGFSNAPDVSALELTRREMEVLALMADGMTSTEIGRQLSISNHTVDWYINGIQRRFSAKNRQHTVALAFR
HGLLS

Sequences:

>Translated_245_residues
MHDILQFISACSQAGSADRVRSEFAKLIREYGFEYFLVSRRMTGELASAGQILAEHLPDGWLEVYRAKKYNLVDPVRKVI
GMVHKPFQWKEALEGLPRAMHRKRASVFFHDAGRYGLQGGYAFPVHGRAGFIGAVFIGGPDRQLPSLHVELLDAATRAVF
WRLLDLSGQAHGFSNAPDVSALELTRREMEVLALMADGMTSTEIGRQLSISNHTVDWYINGIQRRFSAKNRQHTVALAFR
HGLLS
>Mature_245_residues
MHDILQFISACSQAGSADRVRSEFAKLIREYGFEYFLVSRRMTGELASAGQILAEHLPDGWLEVYRAKKYNLVDPVRKVI
GMVHKPFQWKEALEGLPRAMHRKRASVFFHDAGRYGLQGGYAFPVHGRAGFIGAVFIGGPDRQLPSLHVELLDAATRAVF
WRLLDLSGQAHGFSNAPDVSALELTRREMEVLALMADGMTSTEIGRQLSISNHTVDWYINGIQRRFSAKNRQHTVALAFR
HGLLS

Specific function: Probable transcriptional activator. Binds to autoinducer molecule ODHL [H]

COG id: COG2771

COG function: function code K; DNA-binding HTH domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH luxR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016032
- InterPro:   IPR005143
- InterPro:   IPR000792
- InterPro:   IPR011991 [H]

Pfam domain/function: PF03472 Autoind_bind; PF00196 GerE [H]

EC number: NA

Molecular weight: Translated: 27508; Mature: 27508

Theoretical pI: Translated: 9.97; Mature: 9.97

Prosite motif: PS50043 HTH_LUXR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHDILQFISACSQAGSADRVRSEFAKLIREYGFEYFLVSRRMTGELASAGQILAEHLPDG
CHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHCCHH
WLEVYRAKKYNLVDPVRKVIGMVHKPFQWKEALEGLPRAMHRKRASVFFHDAGRYGLQGG
HHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCCC
YAFPVHGRAGFIGAVFIGGPDRQLPSLHVELLDAATRAVFWRLLDLSGQAHGFSNAPDVS
EEEECCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCH
ALELTRREMEVLALMADGMTSTEIGRQLSISNHTVDWYINGIQRRFSAKNRQHTVALAFR
HHHHHHHHHHHHHHHHCCCCHHHHCCEEECCCCCHHHHHHHHHHHHHCCCCCHHHHHHHH
HGLLS
HCCCC
>Mature Secondary Structure
MHDILQFISACSQAGSADRVRSEFAKLIREYGFEYFLVSRRMTGELASAGQILAEHLPDG
CHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHCCHH
WLEVYRAKKYNLVDPVRKVIGMVHKPFQWKEALEGLPRAMHRKRASVFFHDAGRYGLQGG
HHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCCC
YAFPVHGRAGFIGAVFIGGPDRQLPSLHVELLDAATRAVFWRLLDLSGQAHGFSNAPDVS
EEEECCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCH
ALELTRREMEVLALMADGMTSTEIGRQLSISNHTVDWYINGIQRRFSAKNRQHTVALAFR
HHHHHHHHHHHHHHHHCCCCHHHHCCEEECCCCCHHHHHHHHHHHHHCCCCCHHHHHHHH
HGLLS
HCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9139920 [H]