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The map label for this gene is ydaM [C]

Identifier: 159185329

GI number: 159185329

Start: 2674325

End: 2675470

Strand: Reverse

Name: ydaM [C]

Synonym: Atu2691

Alternate gene names: 159185329

Gene position: 2675470-2674325 (Counterclockwise)

Preceding gene: 159185422

Following gene: 15889940

Centisome position: 94.15

GC content: 60.56

Gene sequence:

>1146_bases
ATGCTGACATTCGGCGTGGTGTTCCTGTTCCTGCATAGGATCGGCCACGCTTCGGCGCGATATTGGGGTATCGGATATCT
TGCGGCGGCTTTTGGTTTCGCCACACCTCTGGTGCTTGGCGGCCTGCCGTTCGAAGTCCAGGCGATTCTTTCGAACCTGT
TGTTCTTCTCCGCCTTCTTCCTTTATGGCCACGCGCTGCTCACCCATTTCGAGCGGCCGCTTTATACCAAGGCGCGGCTG
TCGATCGTGGCAGTGGCGGTATTGCTGGTCTCGTTCCATGTTTTCGTCACGCCGGATCTGAAACGCGAACTCGTCATCGG
CGATCTCGTCTGCGCTCTGCTGCTCGCCTTTCCGGTCTGGCTCGTGCGCAAACGGCCCGTCGCGCTCGCTGACAGGCTGA
TGGTGGCCATCGCCTCGCTCGTGGTGTTGGAGACGCTGGTGCGCATCGGCATGCTGCTGGTGATGACGCCGGGTGGCTCG
ATGATCGAGCTCAGCGAATTCTTCGAGTCGGACTATGCTTTTTACATGCAGCTCGCCGCCAGCATCTTCGGCTTCCTGCT
GGCACTGTCCGTGCTCGCAAGCCAGATTTCCGTCACCGTCGACCGTCACCTGCATGCGGCGGAACATGATCCGCTGACGG
ATGTGTTGAACCGCCGCGGTTTCGACCGGCGCGTTCCTGACTTTCGCAACGATACGCCTGACGGCGCGATCATCGCCTGC
GACATAGACCACTTCAAGCGCATCAACGATGTTTACGGTCATGCGGCTGGCGATATCGTGCTTATCGGCCTTTCCGATCT
CCTCAGGCGAAACGCGCCTGACGATGCGCTGGTGGCGCGTTTCGGTGGTGAGGAATTCGTGGTCTTCCTGCCCGGACAAA
CGGCTGCTGCGGCCGGTCAGCTTGCCAATGGCATGCGCACGGGTCTTTCGTCGCTCGACTGGCGCAACCGCGGCGTCACC
AGCCAGATCACCGCAAGTTTCGGCGTCTCGGCTGTTGCGAGGGGCGATCATTCCATTCACGATGCCATCAAGCGGGCCGA
TGACAGTCTTTATGCCGCAAAGCGCGGCGGTCGCGATCAGGTCGTGCTGGAAGGCATACGTTTGCCTGCGGAAGGGCCTG
CGCTCCGGGTTATTACCAAGGCGTGA

Upstream 100 bases:

>100_bases
TTTTCTTAATGGCGTTCCGCTAACGTCGGGGTACAAAGCTCGTCTCTTTCCCCGGCAGACCCCGTTGCAAGATAATTTCG
CCTATCTTCTCCCCTTCATC

Downstream 100 bases:

>100_bases
CATCCTTTTGGCGCGGCGGCTACTTTCCAGTCGCTGCCGCGATGGCCGGCAGCAGGTCAAGCTCTATGCTGCGGGCGTCG
AAGGGCCCGACCTTTTTATA

Product: GGDEF family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 381; Mature: 381

Protein sequence:

>381_residues
MLTFGVVFLFLHRIGHASARYWGIGYLAAAFGFATPLVLGGLPFEVQAILSNLLFFSAFFLYGHALLTHFERPLYTKARL
SIVAVAVLLVSFHVFVTPDLKRELVIGDLVCALLLAFPVWLVRKRPVALADRLMVAIASLVVLETLVRIGMLLVMTPGGS
MIELSEFFESDYAFYMQLAASIFGFLLALSVLASQISVTVDRHLHAAEHDPLTDVLNRRGFDRRVPDFRNDTPDGAIIAC
DIDHFKRINDVYGHAAGDIVLIGLSDLLRRNAPDDALVARFGGEEFVVFLPGQTAAAAGQLANGMRTGLSSLDWRNRGVT
SQITASFGVSAVARGDHSIHDAIKRADDSLYAAKRGGRDQVVLEGIRLPAEGPALRVITKA

Sequences:

>Translated_381_residues
MLTFGVVFLFLHRIGHASARYWGIGYLAAAFGFATPLVLGGLPFEVQAILSNLLFFSAFFLYGHALLTHFERPLYTKARL
SIVAVAVLLVSFHVFVTPDLKRELVIGDLVCALLLAFPVWLVRKRPVALADRLMVAIASLVVLETLVRIGMLLVMTPGGS
MIELSEFFESDYAFYMQLAASIFGFLLALSVLASQISVTVDRHLHAAEHDPLTDVLNRRGFDRRVPDFRNDTPDGAIIAC
DIDHFKRINDVYGHAAGDIVLIGLSDLLRRNAPDDALVARFGGEEFVVFLPGQTAAAAGQLANGMRTGLSSLDWRNRGVT
SQITASFGVSAVARGDHSIHDAIKRADDSLYAAKRGGRDQVVLEGIRLPAEGPALRVITKA
>Mature_381_residues
MLTFGVVFLFLHRIGHASARYWGIGYLAAAFGFATPLVLGGLPFEVQAILSNLLFFSAFFLYGHALLTHFERPLYTKARL
SIVAVAVLLVSFHVFVTPDLKRELVIGDLVCALLLAFPVWLVRKRPVALADRLMVAIASLVVLETLVRIGMLLVMTPGGS
MIELSEFFESDYAFYMQLAASIFGFLLALSVLASQISVTVDRHLHAAEHDPLTDVLNRRGFDRRVPDFRNDTPDGAIIAC
DIDHFKRINDVYGHAAGDIVLIGLSDLLRRNAPDDALVARFGGEEFVVFLPGQTAAAAGQLANGMRTGLSSLDWRNRGVT
SQITASFGVSAVARGDHSIHDAIKRADDSLYAAKRGGRDQVVLEGIRLPAEGPALRVITKA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 GGDEF domain [H]

Homologues:

Organism=Escherichia coli, GI87081881, Length=162, Percent_Identity=38.8888888888889, Blast_Score=96, Evalue=4e-21,
Organism=Escherichia coli, GI1787262, Length=220, Percent_Identity=27.7272727272727, Blast_Score=95, Evalue=8e-21,
Organism=Escherichia coli, GI1788085, Length=204, Percent_Identity=30.8823529411765, Blast_Score=85, Evalue=7e-18,
Organism=Escherichia coli, GI87082007, Length=161, Percent_Identity=36.0248447204969, Blast_Score=84, Evalue=2e-17,
Organism=Escherichia coli, GI1788381, Length=183, Percent_Identity=30.0546448087432, Blast_Score=83, Evalue=3e-17,
Organism=Escherichia coli, GI1786584, Length=161, Percent_Identity=32.2981366459627, Blast_Score=83, Evalue=4e-17,
Organism=Escherichia coli, GI1787802, Length=162, Percent_Identity=33.3333333333333, Blast_Score=79, Evalue=4e-16,
Organism=Escherichia coli, GI145693134, Length=191, Percent_Identity=32.9842931937173, Blast_Score=75, Evalue=6e-15,
Organism=Escherichia coli, GI87081974, Length=151, Percent_Identity=27.8145695364238, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1787056, Length=156, Percent_Identity=30.7692307692308, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI1787541, Length=156, Percent_Identity=29.4871794871795, Blast_Score=62, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR011620 [H]

Pfam domain/function: PF07694 5TM-5TMR_LYT; PF00990 GGDEF [H]

EC number: NA

Molecular weight: Translated: 41514; Mature: 41514

Theoretical pI: Translated: 7.44; Mature: 7.44

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLTFGVVFLFLHRIGHASARYWGIGYLAAAFGFATPLVLGGLPFEVQAILSNLLFFSAFF
CHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
LYGHALLTHFERPLYTKARLSIVAVAVLLVSFHVFVTPDLKRELVIGDLVCALLLAFPVW
HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
LVRKRPVALADRLMVAIASLVVLETLVRIGMLLVMTPGGSMIELSEFFESDYAFYMQLAA
HHHCCCHHHHHHHHHHHHHHHHHHHHHHHCEEEEECCCCCEEHHHHHHCCHHHHHHHHHH
SIFGFLLALSVLASQISVTVDRHLHAAEHDPLTDVLNRRGFDRRVPDFRNDTPDGAIIAC
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCEEEE
DIDHFKRINDVYGHAAGDIVLIGLSDLLRRNAPDDALVARFGGEEFVVFLPGQTAAAAGQ
CHHHHHHHHHHHCCCCCCEEEEEHHHHHCCCCCCHHHHHHCCCCEEEEEECCCHHHHHHH
LANGMRTGLSSLDWRNRGVTSQITASFGVSAVARGDHSIHDAIKRADDSLYAAKRGGRDQ
HHHHHHHHHHHCCCCCCCCCHHHHHHHCCHHHHCCCHHHHHHHHHCCCHHHHHHCCCCCC
VVLEGIRLPAEGPALRVITKA
EEEECCCCCCCCCCEEEEECC
>Mature Secondary Structure
MLTFGVVFLFLHRIGHASARYWGIGYLAAAFGFATPLVLGGLPFEVQAILSNLLFFSAFF
CHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
LYGHALLTHFERPLYTKARLSIVAVAVLLVSFHVFVTPDLKRELVIGDLVCALLLAFPVW
HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
LVRKRPVALADRLMVAIASLVVLETLVRIGMLLVMTPGGSMIELSEFFESDYAFYMQLAA
HHHCCCHHHHHHHHHHHHHHHHHHHHHHHCEEEEECCCCCEEHHHHHHCCHHHHHHHHHH
SIFGFLLALSVLASQISVTVDRHLHAAEHDPLTDVLNRRGFDRRVPDFRNDTPDGAIIAC
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCEEEE
DIDHFKRINDVYGHAAGDIVLIGLSDLLRRNAPDDALVARFGGEEFVVFLPGQTAAAAGQ
CHHHHHHHHHHHCCCCCCEEEEEHHHHHCCCCCCHHHHHHCCCCEEEEEECCCHHHHHHH
LANGMRTGLSSLDWRNRGVTSQITASFGVSAVARGDHSIHDAIKRADDSLYAAKRGGRDQ
HHHHHHHHHHHCCCCCCCCCHHHHHHHCCHHHHCCCHHHHHHHHHCCCHHHHHHCCCCCC
VVLEGIRLPAEGPALRVITKA
EEEECCCCCCCCCCEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA