Definition | Agrobacterium tumefaciens str. C58 chromosome circular, complete sequence. |
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Accession | NC_003062 |
Length | 2,841,580 |
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The map label for this gene is dcp [H]
Identifier: 159185314
GI number: 159185314
Start: 2647213
End: 2649273
Strand: Reverse
Name: dcp [H]
Synonym: Atu2664
Alternate gene names: 159185314
Gene position: 2649273-2647213 (Counterclockwise)
Preceding gene: 159185316
Following gene: 15889919
Centisome position: 93.23
GC content: 57.3
Gene sequence:
>2061_bases ATGCCATTGAAGACCGCCCTTTATCCCGCGCTGGTTGACTGGAACGGCCATAATGGCCTGCCGAAATTCGATGCGGTCAA GGATGAGGATTTTGCGCCCGCTTTCGATGCCGCGCTTTTTTCCCATGAGCAGGAAATCGATGCGATTGCGGGAAATCCAG AGGCGCCGAGTTTCGAAAACACGGTGACCGCACTCGAAATTGCAGGTGACGAGCTCTCGCGTATCTCGTCGCTGTTCTGG AACAAAGCCGGCGCCAACACCAATGGTGTGATCCAGGCGCTCGAGCGGGAAATCGCGCCAAAGATGTCGCGACATTATTC GAAGATCGGCATGAACGAAGCGCTGTTCAAGCGCATCGACACGCTGTGGGAAAAGCGCGAGGCGCTTGGGCTGACAGGCG AAGAAAAACGGGTTCTCGAACGCCATTGGAAAGGTTTTGTCCACTCAGGTGCGAAATTGCCGAAAGAGCGGCAGGAGCGG CTGGCGGCCATCAATGAAGAGCTTGCCGGTCTCGGCGCGAAATTCGGCCAGAACGTGCTGGCGGATGAGAAGAGCTGGAA GCTTTTGCTTTCCACGGATGAAGAGCTTGCGGGCATCCCCGGCTTCCTGCGCGACGCTATGGCGGGGGCAGCCGGCGAGC ACGGGGAGGACGGCAAATTTGCCGTTACCCTTTCCCGCTCGATCATCGAGCCCTTCCTGACTTTTTCAGAACGGCGCGAC CTGCGCGAACAGGCCTTCAAGGCCTGGGTGGCGCGGGGCGAGAACGGTGGCGAGACCGACAATCGCGAGATCGTCCGCCG CACCCTCGAACTGCGCGAGGAAAAGGCAAAACTTCTTGGTTATGCGAATTTCGCTGCCTATAAGCTGGATGATACGATGG CGAAGACGCCGGATGCGGTGAACGGTCTTCTCCGTCAGGTCTGGGAAAAAGCCGTTCAACGGGCCGGTGAGGAAGAGGCT GGACTTGCCGCCATCATCGCCGAGGAAGGCAAGAACCACGAGGTGCTGCCGTGGGACTGGCGGCATTATGCCGAAAAGCT CCGGGCACAGAAATTCAATTTCTCCGAGGCGGAATTGAAGCCCTATCTGCAGCTGGAAAAGATCATCGAAGCCTGTTTCG ATGTGGCAGAGCGGCTGTTTGGAATTCATGCGGTCGAAGTGAAGGGCGTTGTGGGCTATCACCCGGATGTGCGAATTTTC GAAATCCGCGATAACAAGGGCGATCTGAAGGCCATGTTCCTCGGCGACTATTTCGCCCGCCCCTCCAAACGATCAGGCGC CTGGATGAGCTCCTTCCAGTCGCAGCACAAGCTGCCGCTGAAGGACGGCACGGTCGGTGAAATCCCGATCATCTACAATG TCTGCAATTTCGCGAAACCAGCCGAAGGAAAACCGGCGCTGCTTTCGCTCGACGATGCGCGCACGCTGTTCCATGAATTC GGCCACGCCTTGCATGGCATGTTGTCCGATGTCACCTATCCCTCGGTATCCGGAACGGGTGTCTCGCGCGATTTCGTCGA ATTGCCGTCCCAGCTTTACGAACATTGGCTGACGGTGCCGGAAATTCTCGAAAAATACGCGCTGCACTATGAGACTGGTG CGCCGATGCCGAAGGCGCTGCTGGACAAGGTTCTGGCCGCGCAGACCTTCAATGCCGGTTTCAACACGGTGGAATTCACC TCTTCGGCGATCGTCGATATGGCGTTTCACACCCGTGACAGCGTTGCCGATCCGATGGCGGTTCAGGGTGAGGTACTTTC TGGCCTCAATATGCCAAAATCCATCGTCATGCGGCACGCGACGCCGCATTTCCAGCATGTGTTTTCGGGCGACGGTTATT CCGCCGGTTATTATTCCTACATGTGGTCGGAAGTTCTCGATGCCGATGCCTTTGCCGCCTTTGAGGAAACCGGCAACGCT TTTGATGGCGAGATGGCGCGCAGGCTGAAGGATAATATCTATTCCGTCGGGGGCTCGATCGATCCTGAAGAGGCTTATCT CGCGTTCCGCGGCAAGATGCCGAGCCCGGATGCGATGCTTTTGAAGCGCGGTCTCGTATAA
Upstream 100 bases:
>100_bases GAGAAAGCGTCGGCATTTTTCGACCTCCGCTTAGCATATTGAATTGACGCTAGAGGCATGCCCATATGGATTTTAATCGG AATCGCACAAGGAAGATGAA
Downstream 100 bases:
>100_bases GAGACTGTCATAATTCTCAGCTAGAACCTGAGCGCAGGGGGCTTATGACATGAGCCCCCCTTTCGCATTTGCAAAAAAAA GGTTATGAGCGCGCCAAACT
Product: peptidyl-dipeptidase
Products: NA
Alternate protein names: Dipeptidyl carboxypeptidase [H]
Number of amino acids: Translated: 686; Mature: 685
Protein sequence:
>686_residues MPLKTALYPALVDWNGHNGLPKFDAVKDEDFAPAFDAALFSHEQEIDAIAGNPEAPSFENTVTALEIAGDELSRISSLFW NKAGANTNGVIQALEREIAPKMSRHYSKIGMNEALFKRIDTLWEKREALGLTGEEKRVLERHWKGFVHSGAKLPKERQER LAAINEELAGLGAKFGQNVLADEKSWKLLLSTDEELAGIPGFLRDAMAGAAGEHGEDGKFAVTLSRSIIEPFLTFSERRD LREQAFKAWVARGENGGETDNREIVRRTLELREEKAKLLGYANFAAYKLDDTMAKTPDAVNGLLRQVWEKAVQRAGEEEA GLAAIIAEEGKNHEVLPWDWRHYAEKLRAQKFNFSEAELKPYLQLEKIIEACFDVAERLFGIHAVEVKGVVGYHPDVRIF EIRDNKGDLKAMFLGDYFARPSKRSGAWMSSFQSQHKLPLKDGTVGEIPIIYNVCNFAKPAEGKPALLSLDDARTLFHEF GHALHGMLSDVTYPSVSGTGVSRDFVELPSQLYEHWLTVPEILEKYALHYETGAPMPKALLDKVLAAQTFNAGFNTVEFT SSAIVDMAFHTRDSVADPMAVQGEVLSGLNMPKSIVMRHATPHFQHVFSGDGYSAGYYSYMWSEVLDADAFAAFEETGNA FDGEMARRLKDNIYSVGGSIDPEEAYLAFRGKMPSPDAMLLKRGLV
Sequences:
>Translated_686_residues MPLKTALYPALVDWNGHNGLPKFDAVKDEDFAPAFDAALFSHEQEIDAIAGNPEAPSFENTVTALEIAGDELSRISSLFW NKAGANTNGVIQALEREIAPKMSRHYSKIGMNEALFKRIDTLWEKREALGLTGEEKRVLERHWKGFVHSGAKLPKERQER LAAINEELAGLGAKFGQNVLADEKSWKLLLSTDEELAGIPGFLRDAMAGAAGEHGEDGKFAVTLSRSIIEPFLTFSERRD LREQAFKAWVARGENGGETDNREIVRRTLELREEKAKLLGYANFAAYKLDDTMAKTPDAVNGLLRQVWEKAVQRAGEEEA GLAAIIAEEGKNHEVLPWDWRHYAEKLRAQKFNFSEAELKPYLQLEKIIEACFDVAERLFGIHAVEVKGVVGYHPDVRIF EIRDNKGDLKAMFLGDYFARPSKRSGAWMSSFQSQHKLPLKDGTVGEIPIIYNVCNFAKPAEGKPALLSLDDARTLFHEF GHALHGMLSDVTYPSVSGTGVSRDFVELPSQLYEHWLTVPEILEKYALHYETGAPMPKALLDKVLAAQTFNAGFNTVEFT SSAIVDMAFHTRDSVADPMAVQGEVLSGLNMPKSIVMRHATPHFQHVFSGDGYSAGYYSYMWSEVLDADAFAAFEETGNA FDGEMARRLKDNIYSVGGSIDPEEAYLAFRGKMPSPDAMLLKRGLV >Mature_685_residues PLKTALYPALVDWNGHNGLPKFDAVKDEDFAPAFDAALFSHEQEIDAIAGNPEAPSFENTVTALEIAGDELSRISSLFWN KAGANTNGVIQALEREIAPKMSRHYSKIGMNEALFKRIDTLWEKREALGLTGEEKRVLERHWKGFVHSGAKLPKERQERL AAINEELAGLGAKFGQNVLADEKSWKLLLSTDEELAGIPGFLRDAMAGAAGEHGEDGKFAVTLSRSIIEPFLTFSERRDL REQAFKAWVARGENGGETDNREIVRRTLELREEKAKLLGYANFAAYKLDDTMAKTPDAVNGLLRQVWEKAVQRAGEEEAG LAAIIAEEGKNHEVLPWDWRHYAEKLRAQKFNFSEAELKPYLQLEKIIEACFDVAERLFGIHAVEVKGVVGYHPDVRIFE IRDNKGDLKAMFLGDYFARPSKRSGAWMSSFQSQHKLPLKDGTVGEIPIIYNVCNFAKPAEGKPALLSLDDARTLFHEFG HALHGMLSDVTYPSVSGTGVSRDFVELPSQLYEHWLTVPEILEKYALHYETGAPMPKALLDKVLAAQTFNAGFNTVEFTS SAIVDMAFHTRDSVADPMAVQGEVLSGLNMPKSIVMRHATPHFQHVFSGDGYSAGYYSYMWSEVLDADAFAAFEETGNAF DGEMARRLKDNIYSVGGSIDPEEAYLAFRGKMPSPDAMLLKRGLV
Specific function: Removes dipeptides from the C-termini of N-blocked tripeptides, tetrapeptides and larger peptides [H]
COG id: COG0339
COG function: function code E; Zn-dependent oligopeptidases
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the peptidase M3 family [H]
Homologues:
Organism=Homo sapiens, GI4507491, Length=612, Percent_Identity=30.5555555555556, Blast_Score=247, Evalue=3e-65, Organism=Homo sapiens, GI14149738, Length=652, Percent_Identity=26.3803680981595, Blast_Score=207, Evalue=3e-53, Organism=Homo sapiens, GI156105687, Length=672, Percent_Identity=25.297619047619, Blast_Score=172, Evalue=9e-43, Organism=Escherichia coli, GI1787819, Length=687, Percent_Identity=39.8835516739447, Blast_Score=474, Evalue=1e-134, Organism=Escherichia coli, GI1789913, Length=679, Percent_Identity=35.1988217967599, Blast_Score=379, Evalue=1e-106, Organism=Caenorhabditis elegans, GI32565901, Length=634, Percent_Identity=20.820189274448, Blast_Score=90, Evalue=4e-18, Organism=Caenorhabditis elegans, GI71999758, Length=584, Percent_Identity=20.0342465753425, Blast_Score=68, Evalue=2e-11, Organism=Saccharomyces cerevisiae, GI6319793, Length=658, Percent_Identity=25.3799392097264, Blast_Score=195, Evalue=2e-50, Organism=Saccharomyces cerevisiae, GI6322715, Length=363, Percent_Identity=26.7217630853994, Blast_Score=113, Evalue=1e-25, Organism=Drosophila melanogaster, GI21356111, Length=569, Percent_Identity=24.0773286467487, Blast_Score=157, Evalue=3e-38, Organism=Drosophila melanogaster, GI20129717, Length=588, Percent_Identity=22.6190476190476, Blast_Score=135, Evalue=1e-31,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001567 [H]
Pfam domain/function: PF01432 Peptidase_M3 [H]
EC number: =3.4.15.5 [H]
Molecular weight: Translated: 76344; Mature: 76213
Theoretical pI: Translated: 5.24; Mature: 5.24
Prosite motif: PS00142 ZINC_PROTEASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPLKTALYPALVDWNGHNGLPKFDAVKDEDFAPAFDAALFSHEQEIDAIAGNPEAPSFEN CCCCHHHCHHEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCC TVTALEIAGDELSRISSLFWNKAGANTNGVIQALEREIAPKMSRHYSKIGMNEALFKRID CCEEEEECCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH TLWEKREALGLTGEEKRVLERHWKGFVHSGAKLPKERQERLAAINEELAGLGAKFGQNVL HHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHH ADEKSWKLLLSTDEELAGIPGFLRDAMAGAAGEHGEDGKFAVTLSRSIIEPFLTFSERRD CCCCCCEEEEECCHHHHCCCHHHHHHHHCCCCCCCCCCCEEEEECHHHHHHHHHHHHHHH LREQAFKAWVARGENGGETDNREIVRRTLELREEKAKLLGYANFAAYKLDDTMAKTPDAV HHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCHHHCCCHHH NGLLRQVWEKAVQRAGEEEAGLAAIIAEEGKNHEVLPWDWRHYAEKLRAQKFNFSEAELK HHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHH PYLQLEKIIEACFDVAERLFGIHAVEVKGVVGYHPDVRIFEIRDNKGDLKAMFLGDYFAR HHHHHHHHHHHHHHHHHHHHCCEEEEECCEECCCCCEEEEEEECCCCCEEEEEHHHHHCC PSKRSGAWMSSFQSQHKLPLKDGTVGEIPIIYNVCNFAKPAEGKPALLSLDDARTLFHEF CCCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCEEECHHHHHHHHHH GHALHGMLSDVTYPSVSGTGVSRDFVELPSQLYEHWLTVPEILEKYALHYETGAPMPKAL HHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHH LDKVLAAQTFNAGFNTVEFTSSAIVDMAFHTRDSVADPMAVQGEVLSGLNMPKSIVMRHA HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHCC TPHFQHVFSGDGYSAGYYSYMWSEVLDADAFAAFEETGNAFDGEMARRLKDNIYSVGGSI CHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCC DPEEAYLAFRGKMPSPDAMLLKRGLV CHHHHHEEEECCCCCCHHHHHHCCCC >Mature Secondary Structure PLKTALYPALVDWNGHNGLPKFDAVKDEDFAPAFDAALFSHEQEIDAIAGNPEAPSFEN CCCHHHCHHEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCC TVTALEIAGDELSRISSLFWNKAGANTNGVIQALEREIAPKMSRHYSKIGMNEALFKRID CCEEEEECCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH TLWEKREALGLTGEEKRVLERHWKGFVHSGAKLPKERQERLAAINEELAGLGAKFGQNVL HHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHH ADEKSWKLLLSTDEELAGIPGFLRDAMAGAAGEHGEDGKFAVTLSRSIIEPFLTFSERRD CCCCCCEEEEECCHHHHCCCHHHHHHHHCCCCCCCCCCCEEEEECHHHHHHHHHHHHHHH LREQAFKAWVARGENGGETDNREIVRRTLELREEKAKLLGYANFAAYKLDDTMAKTPDAV HHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCHHHCCCHHH NGLLRQVWEKAVQRAGEEEAGLAAIIAEEGKNHEVLPWDWRHYAEKLRAQKFNFSEAELK HHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHH PYLQLEKIIEACFDVAERLFGIHAVEVKGVVGYHPDVRIFEIRDNKGDLKAMFLGDYFAR HHHHHHHHHHHHHHHHHHHHCCEEEEECCEECCCCCEEEEEEECCCCCEEEEEHHHHHCC PSKRSGAWMSSFQSQHKLPLKDGTVGEIPIIYNVCNFAKPAEGKPALLSLDDARTLFHEF CCCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCEEECHHHHHHHHHH GHALHGMLSDVTYPSVSGTGVSRDFVELPSQLYEHWLTVPEILEKYALHYETGAPMPKAL HHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHH LDKVLAAQTFNAGFNTVEFTSSAIVDMAFHTRDSVADPMAVQGEVLSGLNMPKSIVMRHA HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHCC TPHFQHVFSGDGYSAGYYSYMWSEVLDADAFAAFEETGNAFDGEMARRLKDNIYSVGGSI CHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCC DPEEAYLAFRGKMPSPDAMLLKRGLV CHHHHHEEEECCCCCCHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8226676; 9097039; 9278503 [H]