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The map label for this gene is fdhD

Identifier: 159185295

GI number: 159185295

Start: 2603089

End: 2603904

Strand: Reverse

Name: fdhD

Synonym: Atu2619

Alternate gene names: 159185295

Gene position: 2603904-2603089 (Counterclockwise)

Preceding gene: 159185296

Following gene: 229007178

Centisome position: 91.64

GC content: 59.56

Gene sequence:

>816_bases
ATGATCGTCGTGTCGGTAGAAGCAAGTTATCGAAGGGTTGCCAGAACCGCTTTGCGAGAGGGCACGCCTGCCACAGGTGA
GCGTGCCGTGCCGGAAGAGGTGCCGGTTGCCTTTTCTTACGGTGGCAGCACCCATGCCGTGATGATGGCCAGCCCTGCCG
ATCTTATCGATTTTGCCGTTGGCTTCAGCCTCACCGAGGGCATCATATCGATGCGTTCCGAAATCCAGGCCATTGAAGTG
GTCGAGGCGGGGCAGGGTTACGATGTCCAGGTGGATTTGACGGATGCCGAGGCCGATGCGCTGCGGGCAAGACGACGGCA
TATGGCCGGCCCGGTTGGCTGCGGTCTCTGTGGCATTGAATCGATAGAGCAGGCGGTTCGTGTCGTGCCGGATTTGAGCA
GCGTGAAATCGTCGGTCCACGGCAACGATATCGTTGCGGCTGTGAAAGCCCTGAACGATGCACAAACCCTCAATCGTGAA
ACAAGGGCTGTTCACGGTGCCGGGTTTTATAATCCGCGCGAGGGGCTTTTGGCCGTGCGCGAAGATGTCGGCCGCCACAA
TGCGCTCGATAAATTGGCCGGTGCGGTGGTGAATGCGGGCATTTCCGCGCAGATGGGTATTGTGGCGGTTACCAGCCGCC
TGTCGGTGGAGATGGTGCAGAAGACGGCGATCCTCGGCTGTCCGGTTCTGGCCGCGATCTCCGCCCCCACGGCGCTCGCC
ATCGAAACTGCCGATAGAGCGGGTATCACGCTTGTTGCGTTGGTCCGGGGTGAAGACTTCGAGATCTTCACCCGTGCGGA
CCGTATTATTCTATAG

Upstream 100 bases:

>100_bases
ATTCCGATTTTTCAGGTGATGGGCTAGATGTGAAGACGAAGAGGAATACCGCTTTACCGGTCATAGATCGATGTGGTGGT
GTGTTTTCCGTCATGGAGGA

Downstream 100 bases:

>100_bases
CCTCGGCGGTTGGCTTCGGCATAGGCGGGTTTAGAATTCCGCCCATTCGGCTGCCGCATTGCCATGCGCCCTTGCCGTGG
CATATCGCGGCTGAGGTGTC

Product: formate dehydrogenase accessory protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 271; Mature: 271

Protein sequence:

>271_residues
MIVVSVEASYRRVARTALREGTPATGERAVPEEVPVAFSYGGSTHAVMMASPADLIDFAVGFSLTEGIISMRSEIQAIEV
VEAGQGYDVQVDLTDAEADALRARRRHMAGPVGCGLCGIESIEQAVRVVPDLSSVKSSVHGNDIVAAVKALNDAQTLNRE
TRAVHGAGFYNPREGLLAVREDVGRHNALDKLAGAVVNAGISAQMGIVAVTSRLSVEMVQKTAILGCPVLAAISAPTALA
IETADRAGITLVALVRGEDFEIFTRADRIIL

Sequences:

>Translated_271_residues
MIVVSVEASYRRVARTALREGTPATGERAVPEEVPVAFSYGGSTHAVMMASPADLIDFAVGFSLTEGIISMRSEIQAIEV
VEAGQGYDVQVDLTDAEADALRARRRHMAGPVGCGLCGIESIEQAVRVVPDLSSVKSSVHGNDIVAAVKALNDAQTLNRE
TRAVHGAGFYNPREGLLAVREDVGRHNALDKLAGAVVNAGISAQMGIVAVTSRLSVEMVQKTAILGCPVLAAISAPTALA
IETADRAGITLVALVRGEDFEIFTRADRIIL
>Mature_271_residues
MIVVSVEASYRRVARTALREGTPATGERAVPEEVPVAFSYGGSTHAVMMASPADLIDFAVGFSLTEGIISMRSEIQAIEV
VEAGQGYDVQVDLTDAEADALRARRRHMAGPVGCGLCGIESIEQAVRVVPDLSSVKSSVHGNDIVAAVKALNDAQTLNRE
TRAVHGAGFYNPREGLLAVREDVGRHNALDKLAGAVVNAGISAQMGIVAVTSRLSVEMVQKTAILGCPVLAAISAPTALA
IETADRAGITLVALVRGEDFEIFTRADRIIL

Specific function: Necessary for formate dehydrogenase activity

COG id: COG1526

COG function: function code C; Uncharacterized protein required for formate dehydrogenase activity

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fdhD family

Homologues:

Organism=Escherichia coli, GI1790329, Length=240, Percent_Identity=42.9166666666667, Blast_Score=182, Evalue=2e-47,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): FDHD_AGRT5 (Q8UC79)

Other databases:

- EMBL:   AE007869
- PIR:   AB2898
- PIR:   D97673
- RefSeq:   NP_355556.2
- ProteinModelPortal:   Q8UC79
- SMR:   Q8UC79
- STRING:   Q8UC79
- GeneID:   1134657
- GenomeReviews:   AE007869_GR
- KEGG:   atu:Atu2619
- eggNOG:   COG1526
- HOGENOM:   HBG732883
- OMA:   DYVGQEW
- PhylomeDB:   Q8UC79
- ProtClustDB:   PRK00724
- BioCyc:   ATUM176299-1:ATU2619-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00187
- InterPro:   IPR003786
- TIGRFAMs:   TIGR00129

Pfam domain/function: PF02634 FdhD-NarQ

EC number: NA

Molecular weight: Translated: 28474; Mature: 28474

Theoretical pI: Translated: 5.01; Mature: 5.01

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIVVSVEASYRRVARTALREGTPATGERAVPEEVPVAFSYGGSTHAVMMASPADLIDFAV
CEEEEECHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEECCCCCEEEEEECCHHHHHHHH
GFSLTEGIISMRSEIQAIEVVEAGQGYDVQVDLTDAEADALRARRRHMAGPVGCGLCGIE
HHHHHHHHHHHHHHHHHHHEEECCCCEEEEEEECCCHHHHHHHHHHHCCCCCCCCCCCHH
SIEQAVRVVPDLSSVKSSVHGNDIVAAVKALNDAQTLNRETRAVHGAGFYNPREGLLAVR
HHHHHHHHCCCHHHHHHHCCCCHHHHHHHHHHHHHHHCHHHHEEECCCCCCCHHHHHHHH
EDVGRHNALDKLAGAVVNAGISAQMGIVAVTSRLSVEMVQKTAILGCPVLAAISAPTALA
HHHCCHHHHHHHHHHHHHCCCCHHCHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCEEE
IETADRAGITLVALVRGEDFEIFTRADRIIL
EECCCCCCEEEEEEEECCCEEEEECCCCCCC
>Mature Secondary Structure
MIVVSVEASYRRVARTALREGTPATGERAVPEEVPVAFSYGGSTHAVMMASPADLIDFAV
CEEEEECHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEECCCCCEEEEEECCHHHHHHHH
GFSLTEGIISMRSEIQAIEVVEAGQGYDVQVDLTDAEADALRARRRHMAGPVGCGLCGIE
HHHHHHHHHHHHHHHHHHHEEECCCCEEEEEEECCCHHHHHHHHHHHCCCCCCCCCCCHH
SIEQAVRVVPDLSSVKSSVHGNDIVAAVKALNDAQTLNRETRAVHGAGFYNPREGLLAVR
HHHHHHHHCCCHHHHHHHCCCCHHHHHHHHHHHHHHHCHHHHEEECCCCCCCHHHHHHHH
EDVGRHNALDKLAGAVVNAGISAQMGIVAVTSRLSVEMVQKTAILGCPVLAAISAPTALA
HHHCCHHHHHHHHHHHHHCCCCHHCHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCEEE
IETADRAGITLVALVRGEDFEIFTRADRIIL
EECCCCCCEEEEEEEECCCEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11743193; 11743194