Definition | Agrobacterium tumefaciens str. C58 chromosome circular, complete sequence. |
---|---|
Accession | NC_003062 |
Length | 2,841,580 |
Click here to switch to the map view.
The map label for this gene is 159185269
Identifier: 159185269
GI number: 159185269
Start: 2536866
End: 2537870
Strand: Reverse
Name: 159185269
Synonym: Atu2565
Alternate gene names: NA
Gene position: 2537870-2536866 (Counterclockwise)
Preceding gene: 15889824
Following gene: 15889822
Centisome position: 89.31
GC content: 62.19
Gene sequence:
>1005_bases ATGGCGGCACACAACAATCTTCTCACGGATATCGACGGTATTCTGGTCGGCAATGTCACCGATCTCTCCCTCGGCTCCGG CGTTACGGCGATTGTTTTCGAAAAGCCTGCCGTTGCTTCCGGTTCGGTTCTCGGCGGTGCGCCCGGCGGGCGCGATACCG GCCTGCTGGACCCGTCCATGACGGTTGAAACGGTGGATGCACTGGTACTTTCCGGTGGCTCCGCCTTTGGGCTGGATGCG GCGGGCGGTGTTCAGGCCGGATTACGTGAGATCGGTCGTGGCTTGCAGGTGGGCTCCACCCGTGTGCCCATCGTGCCGCA GGCGATCCTCATGGATATGTTGAATGGCGGGAATAAGGATTGGGGGCTGCATTCGCCCTATCGTGAGATGGGATATGCGG CTTTCAAGGCGGCGGGCCGTGACCCTTTCGAACTTGGAACGGCGGGTGCAGGAACGGGCGCGACGACCGCGACTTTCAAG GGCGGGCTCGGTTCGGCAAGCGCCATCAGTTCTGGCGGATACAAGGTTGCGGCAATCGTTGCCGTCAATGCCCTTGGTTC CGCAACCGTCGGCACGAGCCGCCATTTCTGGTCAGCACCTTTTGAAGTGCATGGCGAATTCGGCGATCACGGTTTTCCCG CTCGTTTTACAGCGGATGATACGGCGCTTCGCCTCAAGGGCGTCAATCTCACCGCGACGACCATCGGCGCCGTGGTAACC GATGCGGTGCTCACCAAGGCGCAGGCCCATCGCCTCTCCATCATGGCGCATGACGGGCTTGCGCGTGCGGTTCTGCCCGC CCATCTGCCGAGCGATGGCGACACCATGTTCGCGGCCGCGACTGGTGACAAACCTCAGGAGGGCGGCGCTCATTTTGCCG AGCTTTGCTATCTCGCGACAATAGTGATGGCGCGGGCGGTGGCGCGCGGCGTCTATGAGGCGACGGCGTTACCTGTGGAT GGGGCGCAGAGGGCCTATCGTGACATTCATGGCCGGGGTTTTTGA
Upstream 100 bases:
>100_bases GTTTTCTCCTGATCGCCGCTTTCCGCCAAGGTCGGGCATGTCACCTTTTGCGTTGACAGTGTCCCGTGGCGGCGGGATAC CGGGAGTAAAGGGGAACAGC
Downstream 100 bases:
>100_bases ACCATGAGCGAGAAACGCCTGCCACTGAAACCCGTTCTCCGCATCGATTTTCCACCCGGAGAGCGTCTGGGGCACGGCAA GGTCGAGTTGATGCAATTGA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 334; Mature: 333
Protein sequence:
>334_residues MAAHNNLLTDIDGILVGNVTDLSLGSGVTAIVFEKPAVASGSVLGGAPGGRDTGLLDPSMTVETVDALVLSGGSAFGLDA AGGVQAGLREIGRGLQVGSTRVPIVPQAILMDMLNGGNKDWGLHSPYREMGYAAFKAAGRDPFELGTAGAGTGATTATFK GGLGSASAISSGGYKVAAIVAVNALGSATVGTSRHFWSAPFEVHGEFGDHGFPARFTADDTALRLKGVNLTATTIGAVVT DAVLTKAQAHRLSIMAHDGLARAVLPAHLPSDGDTMFAAATGDKPQEGGAHFAELCYLATIVMARAVARGVYEATALPVD GAQRAYRDIHGRGF
Sequences:
>Translated_334_residues MAAHNNLLTDIDGILVGNVTDLSLGSGVTAIVFEKPAVASGSVLGGAPGGRDTGLLDPSMTVETVDALVLSGGSAFGLDA AGGVQAGLREIGRGLQVGSTRVPIVPQAILMDMLNGGNKDWGLHSPYREMGYAAFKAAGRDPFELGTAGAGTGATTATFK GGLGSASAISSGGYKVAAIVAVNALGSATVGTSRHFWSAPFEVHGEFGDHGFPARFTADDTALRLKGVNLTATTIGAVVT DAVLTKAQAHRLSIMAHDGLARAVLPAHLPSDGDTMFAAATGDKPQEGGAHFAELCYLATIVMARAVARGVYEATALPVD GAQRAYRDIHGRGF >Mature_333_residues AAHNNLLTDIDGILVGNVTDLSLGSGVTAIVFEKPAVASGSVLGGAPGGRDTGLLDPSMTVETVDALVLSGGSAFGLDAA GGVQAGLREIGRGLQVGSTRVPIVPQAILMDMLNGGNKDWGLHSPYREMGYAAFKAAGRDPFELGTAGAGTGATTATFKG GLGSASAISSGGYKVAAIVAVNALGSATVGTSRHFWSAPFEVHGEFGDHGFPARFTADDTALRLKGVNLTATTIGAVVTD AVLTKAQAHRLSIMAHDGLARAVLPAHLPSDGDTMFAAATGDKPQEGGAHFAELCYLATIVMARAVARGVYEATALPVDG AQRAYRDIHGRGF
Specific function: Unknown
COG id: COG3191
COG function: function code EQ; L-aminopeptidase/D-esterase
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: To M.leprae ML1167 [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR016117 - InterPro: IPR005321 [H]
Pfam domain/function: PF03576 Peptidase_S58 [H]
EC number: NA
Molecular weight: Translated: 33842; Mature: 33710
Theoretical pI: Translated: 6.34; Mature: 6.34
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAAHNNLLTDIDGILVGNVTDLSLGSGVTAIVFEKPAVASGSVLGGAPGGRDTGLLDPSM CCCCCCCHHCCCCEEECCEEEECCCCCCEEEEEECCCCCCCCEECCCCCCCCCCCCCCCC TVETVDALVLSGGSAFGLDAAGGVQAGLREIGRGLQVGSTRVPIVPQAILMDMLNGGNKD HHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCCCC WGLHSPYREMGYAAFKAAGRDPFELGTAGAGTGATTATFKGGLGSASAISSGGYKVAAIV CCCCCCHHHHHHHHHHHCCCCCHHCCCCCCCCCCCEEEECCCCCCCHHHCCCCEEEEEEE AVNALGSATVGTSRHFWSAPFEVHGEFGDHGFPARFTADDTALRLKGVNLTATTIGAVVT EEHHCCCCCCCCCCCEECCCCEEECCCCCCCCCCEECCCCCEEEEECCEEEHHHHHHHHH DAVLTKAQAHRLSIMAHDGLARAVLPAHLPSDGDTMFAAATGDKPQEGGAHFAELCYLAT HHHHHHHHHHEEEEEECCCHHHHHHHCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHH IVMARAVARGVYEATALPVDGAQRAYRDIHGRGF HHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCC >Mature Secondary Structure AAHNNLLTDIDGILVGNVTDLSLGSGVTAIVFEKPAVASGSVLGGAPGGRDTGLLDPSM CCCCCCHHCCCCEEECCEEEECCCCCCEEEEEECCCCCCCCEECCCCCCCCCCCCCCCC TVETVDALVLSGGSAFGLDAAGGVQAGLREIGRGLQVGSTRVPIVPQAILMDMLNGGNKD HHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCCCC WGLHSPYREMGYAAFKAAGRDPFELGTAGAGTGATTATFKGGLGSASAISSGGYKVAAIV CCCCCCHHHHHHHHHHHCCCCCHHCCCCCCCCCCCEEEECCCCCCCHHHCCCCEEEEEEE AVNALGSATVGTSRHFWSAPFEVHGEFGDHGFPARFTADDTALRLKGVNLTATTIGAVVT EEHHCCCCCCCCCCCEECCCCEEECCCCCCCCCCEECCCCCEEEEECCEEEHHHHHHHHH DAVLTKAQAHRLSIMAHDGLARAVLPAHLPSDGDTMFAAATGDKPQEGGAHFAELCYLAT HHHHHHHHHHEEEEEECCCHHHHHHHCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHH IVMARAVARGVYEATALPVDGAQRAYRDIHGRGF HHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 9634230; 12218036 [H]