Definition | Agrobacterium tumefaciens str. C58 chromosome circular, complete sequence. |
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Accession | NC_003062 |
Length | 2,841,580 |
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The map label for this gene is apt
Identifier: 159185114
GI number: 159185114
Start: 2207023
End: 2207565
Strand: Reverse
Name: apt
Synonym: Atu2236
Alternate gene names: 159185114
Gene position: 2207565-2207023 (Counterclockwise)
Preceding gene: 159185115
Following gene: 15889508
Centisome position: 77.69
GC content: 61.51
Gene sequence:
>543_bases ATGACCGTTATCGCTTCGGAGCTTTCCGCTGCCATCCGTTCCATTCCCGACTATCCGAAGCCGGGCATCATCTTCCGGGA CATCACGACGCTGCTCGGCAACCCGCGCGCATTTCGCCGCGCCGTCGATGAACTCGTGCAGCCCTATGCGGGAACGAAGA TCGACAAGATCGCCGGCATGGAAGCGCGCGGCTTCATTCTGGGCGGGGCGGTGGCGCATCAGCTTTCGGCCGGTTTCGTG CCGATCCGCAAGAAGGGCAAGCTGCCGCACACCACCGTGCGGGTCGCCTACAGCCTGGAATATGGTGTCGACGAAATGGA GATGCATGTGGATGCCGTACAGCCGGGCGAGAAGGTCATTCTTGTCGACGACCTGATCGCCACCGGCGGCACCGCCGAAG GTGCCGTGAAGCTCTTGCGACAGATGGGTGCGGAAATCGTATCCGCCTGCTTCGTCATCGACCTGCCTGATCTCGGCGGC CGCAAGAAGCTGGAAGATCTTGGCGTCGACGTGCGCACGCTGGTAGAATTTTCTGGCCATTGA
Upstream 100 bases:
>100_bases GTGGAATGAGTGCCGTTGCCTTTTTAGTTGGTCCACAGCCGTCAAATTGATAGGGTGGCCCGAACTTCCTGATCCATTTC CCATTTTAACTGGAAATACC
Downstream 100 bases:
>100_bases GGCGGTAACCGGGGCAAGTCGCGATGGTTTGCCCCAGGGCTCGTATTAATCGAATTCCAGAACCCCGCTCTGGAAGGTCA GTACCGTTTCTCCCGACTGA
Product: adenine phosphoribosyltransferase
Products: NA
Alternate protein names: APRT
Number of amino acids: Translated: 180; Mature: 179
Protein sequence:
>180_residues MTVIASELSAAIRSIPDYPKPGIIFRDITTLLGNPRAFRRAVDELVQPYAGTKIDKIAGMEARGFILGGAVAHQLSAGFV PIRKKGKLPHTTVRVAYSLEYGVDEMEMHVDAVQPGEKVILVDDLIATGGTAEGAVKLLRQMGAEIVSACFVIDLPDLGG RKKLEDLGVDVRTLVEFSGH
Sequences:
>Translated_180_residues MTVIASELSAAIRSIPDYPKPGIIFRDITTLLGNPRAFRRAVDELVQPYAGTKIDKIAGMEARGFILGGAVAHQLSAGFV PIRKKGKLPHTTVRVAYSLEYGVDEMEMHVDAVQPGEKVILVDDLIATGGTAEGAVKLLRQMGAEIVSACFVIDLPDLGG RKKLEDLGVDVRTLVEFSGH >Mature_179_residues TVIASELSAAIRSIPDYPKPGIIFRDITTLLGNPRAFRRAVDELVQPYAGTKIDKIAGMEARGFILGGAVAHQLSAGFVP IRKKGKLPHTTVRVAYSLEYGVDEMEMHVDAVQPGEKVILVDDLIATGGTAEGAVKLLRQMGAEIVSACFVIDLPDLGGR KKLEDLGVDVRTLVEFSGH
Specific function: Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
COG id: COG0503
COG function: function code F; Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins
Gene ontology:
Cell location: Cytoplasm
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the purine/pyrimidine phosphoribosyltransferase family
Homologues:
Organism=Homo sapiens, GI4502171, Length=156, Percent_Identity=46.7948717948718, Blast_Score=151, Evalue=3e-37, Organism=Homo sapiens, GI71773201, Length=121, Percent_Identity=49.5867768595041, Blast_Score=127, Evalue=6e-30, Organism=Escherichia coli, GI1786675, Length=183, Percent_Identity=52.4590163934426, Blast_Score=201, Evalue=2e-53, Organism=Caenorhabditis elegans, GI17509087, Length=177, Percent_Identity=42.3728813559322, Blast_Score=131, Evalue=2e-31, Organism=Saccharomyces cerevisiae, GI6323619, Length=164, Percent_Identity=41.4634146341463, Blast_Score=121, Evalue=5e-29, Organism=Saccharomyces cerevisiae, GI6320649, Length=164, Percent_Identity=40.2439024390244, Blast_Score=104, Evalue=7e-24, Organism=Drosophila melanogaster, GI17136334, Length=160, Percent_Identity=40.625, Blast_Score=122, Evalue=2e-28,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): APT_AGRT5 (Q8UD91)
Other databases:
- EMBL: AE007869 - PIR: A97628 - PIR: AC2851 - RefSeq: NP_355193.2 - ProteinModelPortal: Q8UD91 - SMR: Q8UD91 - STRING: Q8UD91 - GeneID: 1134274 - GenomeReviews: AE007869_GR - KEGG: atu:Atu2236 - eggNOG: COG0503 - HOGENOM: HBG703830 - OMA: GILFYDI - PhylomeDB: Q8UD91 - ProtClustDB: PRK02304 - BioCyc: ATUM176299-1:ATU2236-MONOMER - GO: GO:0005737 - HAMAP: MF_00004 - InterPro: IPR005764 - InterPro: IPR000836 - TIGRFAMs: TIGR01090
Pfam domain/function: PF00156 Pribosyltran
EC number: =2.4.2.7
Molecular weight: Translated: 19339; Mature: 19208
Theoretical pI: Translated: 6.52; Mature: 6.52
Prosite motif: PS00103 PUR_PYR_PR_TRANSFER
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTVIASELSAAIRSIPDYPKPGIIFRDITTLLGNPRAFRRAVDELVQPYAGTKIDKIAGM CCEEHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCHHHHCCC EARGFILGGAVAHQLSAGFVPIRKKGKLPHTTVRVAYSLEYGVDEMEMHVDAVQPGEKVI CCCCEEEHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEECCCCCHHHHHHHCCCCCCEEE LVDDLIATGGTAEGAVKLLRQMGAEIVSACFVIDLPDLGGRKKLEDLGVDVRTLVEFSGH EEECHHHCCCCHHHHHHHHHHHHHHHHHHHHEEECCCCCCCHHHHHHCCCHHHHHHHCCC >Mature Secondary Structure TVIASELSAAIRSIPDYPKPGIIFRDITTLLGNPRAFRRAVDELVQPYAGTKIDKIAGM CEEHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCHHHHCCC EARGFILGGAVAHQLSAGFVPIRKKGKLPHTTVRVAYSLEYGVDEMEMHVDAVQPGEKVI CCCCEEEHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEECCCCCHHHHHHHCCCCCCEEE LVDDLIATGGTAEGAVKLLRQMGAEIVSACFVIDLPDLGGRKKLEDLGVDVRTLVEFSGH EEECHHHCCCCHHHHHHHHHHHHHHHHHHHHEEECCCCCCCHHHHHHCCCHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 11743193; 11743194