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The map label for this gene is yhcK [H]

Identifier: 159185090

GI number: 159185090

Start: 2154605

End: 2155744

Strand: Reverse

Name: yhcK [H]

Synonym: Atu2179

Alternate gene names: 159185090

Gene position: 2155744-2154605 (Counterclockwise)

Preceding gene: 15889460

Following gene: 15889455

Centisome position: 75.86

GC content: 58.07

Gene sequence:

>1140_bases
ATGCTGGGTGAACTCGACCTTGCAACAGTCATACTGATGCAAAAATGTTCTTACATCGTTGGGCTGTTGAGTTTTATCTA
CCTGAAGATGAGTAATCGCGGTTTGCCCGGCCCCGTTCATCTTGCGGCGGGTTTCGCGGCGATGACGGTCGGCTCTACGC
TTGCCGGTTACGGCGAATGGAAGATACTTTCGCCGGCGCTGTGGGAGCTTGGCAGCGTTTTGTTCGGTATTGCCGGATAT
GCGCTGATCTGGCTTGGGCTGAAGACGTTGAGCGACGGACGCTTTGTCAATCGCAAAACCATCTTGTTTACCTGTCTTGT
CGCCCTGCTGGCGATTGGCGTTGCGCTGCAGGTGGCCGGCAACAATACGTTTCGCGCGGCGCTTTTTAATGGCTGTGCGG
CTCTGGCCTATCTTGGCGGGGCGGGCGTGCTTTTTGCCCGGTGGCGGAAAGAGCCGCTTCTTTCCCGGCTGGCTCTCGGT
GCGATTACAGGCGTTTCCGGTCTGATATCGCTGGCGGTGATGAAAAGCGTGCTTTTCCCTGGTTACGCCAGCATCAATCT
GGTCACTGCGTTTTTCTTCATTATCATGCTCAACTTCGCCATCTCGCTCTTTGTGATGATGCTGGTAGCGGAGCGGTCCG
AACGGAAATTGCTGGTTCTGGCGAATACCGATCCACTGACGGGCGTCAAGAACCGGCGTTTCTTCTTCCAGACCATGCCC
GCAGCCCCCGATCCCGCTGATGCGGCCATGTTGCTTGACATTGACCACTTCAAGTCGATCAATGACCGTTTCGGCCACGC
TGTCGGCGACAGCGTGCTGCAGGAAGTGGCAAGGCGCATCAGCGGCAGCATCCGTGGCGGCGATGTGCTGGCGCGTTACG
GCGGCGAGGAATTCATCATTTTCCTGCCGGGTGCCGGTGTGGACAAGGCTTGCATGATCGGCGAGCGCATTCGCGACGCG
GTTGCGATAAATGAGGTCGATTGCGGCGGTCTGCGTGTCGGGGTGACCATCAGCATCGGCGTTGCCACCACAGGCGATAT
GCGCTGCGATCTCCAGATGCTCGCCGAAAAGGCGGATCGAGCGCTTTACCGGGCAAAGACCGAAGGGCGCAATTGCGTTC
GCGAGGCGCTGGCCGCGTAA

Upstream 100 bases:

>100_bases
ATAATACTTTTTACAGGTTGTTTATCTGTAATTTTTATTGAAAATTTATCTCCATATTATAATAGGTTCTCTCAAAATTT
ATTTACCGTATGGGCATATT

Downstream 100 bases:

>100_bases
GAAGCGGAAAAGCCTGCGCCTGTTTTCCCAAGATGGCAGCCTCTGCTCAGCCTGTCGGCTCTTTCGCTGCATCTGCAGTG
GCGCGATGTCGCAAGGCCTC

Product: GGDEF family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 379; Mature: 379

Protein sequence:

>379_residues
MLGELDLATVILMQKCSYIVGLLSFIYLKMSNRGLPGPVHLAAGFAAMTVGSTLAGYGEWKILSPALWELGSVLFGIAGY
ALIWLGLKTLSDGRFVNRKTILFTCLVALLAIGVALQVAGNNTFRAALFNGCAALAYLGGAGVLFARWRKEPLLSRLALG
AITGVSGLISLAVMKSVLFPGYASINLVTAFFFIIMLNFAISLFVMMLVAERSERKLLVLANTDPLTGVKNRRFFFQTMP
AAPDPADAAMLLDIDHFKSINDRFGHAVGDSVLQEVARRISGSIRGGDVLARYGGEEFIIFLPGAGVDKACMIGERIRDA
VAINEVDCGGLRVGVTISIGVATTGDMRCDLQMLAEKADRALYRAKTEGRNCVREALAA

Sequences:

>Translated_379_residues
MLGELDLATVILMQKCSYIVGLLSFIYLKMSNRGLPGPVHLAAGFAAMTVGSTLAGYGEWKILSPALWELGSVLFGIAGY
ALIWLGLKTLSDGRFVNRKTILFTCLVALLAIGVALQVAGNNTFRAALFNGCAALAYLGGAGVLFARWRKEPLLSRLALG
AITGVSGLISLAVMKSVLFPGYASINLVTAFFFIIMLNFAISLFVMMLVAERSERKLLVLANTDPLTGVKNRRFFFQTMP
AAPDPADAAMLLDIDHFKSINDRFGHAVGDSVLQEVARRISGSIRGGDVLARYGGEEFIIFLPGAGVDKACMIGERIRDA
VAINEVDCGGLRVGVTISIGVATTGDMRCDLQMLAEKADRALYRAKTEGRNCVREALAA
>Mature_379_residues
MLGELDLATVILMQKCSYIVGLLSFIYLKMSNRGLPGPVHLAAGFAAMTVGSTLAGYGEWKILSPALWELGSVLFGIAGY
ALIWLGLKTLSDGRFVNRKTILFTCLVALLAIGVALQVAGNNTFRAALFNGCAALAYLGGAGVLFARWRKEPLLSRLALG
AITGVSGLISLAVMKSVLFPGYASINLVTAFFFIIMLNFAISLFVMMLVAERSERKLLVLANTDPLTGVKNRRFFFQTMP
AAPDPADAAMLLDIDHFKSINDRFGHAVGDSVLQEVARRISGSIRGGDVLARYGGEEFIIFLPGAGVDKACMIGERIRDA
VAINEVDCGGLRVGVTISIGVATTGDMRCDLQMLAEKADRALYRAKTEGRNCVREALAA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 GGDEF domain [H]

Homologues:

Organism=Escherichia coli, GI1787262, Length=161, Percent_Identity=41.6149068322981, Blast_Score=115, Evalue=4e-27,
Organism=Escherichia coli, GI87081881, Length=170, Percent_Identity=41.7647058823529, Blast_Score=106, Evalue=2e-24,
Organism=Escherichia coli, GI87082007, Length=132, Percent_Identity=44.6969696969697, Blast_Score=105, Evalue=7e-24,
Organism=Escherichia coli, GI1786584, Length=165, Percent_Identity=35.1515151515151, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI1788085, Length=164, Percent_Identity=40.2439024390244, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI1787802, Length=184, Percent_Identity=32.6086956521739, Blast_Score=94, Evalue=2e-20,
Organism=Escherichia coli, GI145693134, Length=157, Percent_Identity=36.3057324840764, Blast_Score=93, Evalue=3e-20,
Organism=Escherichia coli, GI1787816, Length=159, Percent_Identity=35.2201257861635, Blast_Score=92, Evalue=8e-20,
Organism=Escherichia coli, GI1788381, Length=178, Percent_Identity=34.2696629213483, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI1787541, Length=163, Percent_Identity=31.9018404907975, Blast_Score=83, Evalue=3e-17,
Organism=Escherichia coli, GI1787056, Length=161, Percent_Identity=31.6770186335404, Blast_Score=72, Evalue=5e-14,
Organism=Escherichia coli, GI87081977, Length=166, Percent_Identity=31.3253012048193, Blast_Score=68, Evalue=1e-12,
Organism=Escherichia coli, GI1788956, Length=165, Percent_Identity=34.5454545454545, Blast_Score=68, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR011620 [H]

Pfam domain/function: PF07694 5TM-5TMR_LYT; PF00990 GGDEF [H]

EC number: NA

Molecular weight: Translated: 40597; Mature: 40597

Theoretical pI: Translated: 9.03; Mature: 9.03

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLGELDLATVILMQKCSYIVGLLSFIYLKMSNRGLPGPVHLAAGFAAMTVGSTLAGYGEW
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCC
KILSPALWELGSVLFGIAGYALIWLGLKTLSDGRFVNRKTILFTCLVALLAIGVALQVAG
EECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECHHHHHHHHHHHHHHHHHEEEECC
NNTFRAALFNGCAALAYLGGAGVLFARWRKEPLLSRLALGAITGVSGLISLAVMKSVLFP
CCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
GYASINLVTAFFFIIMLNFAISLFVMMLVAERSERKLLVLANTDPLTGVKNRRFFFQTMP
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCEEEEEECC
AAPDPADAAMLLDIDHFKSINDRFGHAVGDSVLQEVARRISGSIRGGDVLARYGGEEFII
CCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHEECCCCEEEE
FLPGAGVDKACMIGERIRDAVAINEVDCGGLRVGVTISIGVATTGDMRCDLQMLAEKADR
EECCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEEEEEECCCCHHHHHHHHHHHHH
ALYRAKTEGRNCVREALAA
HHHHHHHCHHHHHHHHHCC
>Mature Secondary Structure
MLGELDLATVILMQKCSYIVGLLSFIYLKMSNRGLPGPVHLAAGFAAMTVGSTLAGYGEW
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCC
KILSPALWELGSVLFGIAGYALIWLGLKTLSDGRFVNRKTILFTCLVALLAIGVALQVAG
EECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECHHHHHHHHHHHHHHHHHEEEECC
NNTFRAALFNGCAALAYLGGAGVLFARWRKEPLLSRLALGAITGVSGLISLAVMKSVLFP
CCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
GYASINLVTAFFFIIMLNFAISLFVMMLVAERSERKLLVLANTDPLTGVKNRRFFFQTMP
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCEEEEEECC
AAPDPADAAMLLDIDHFKSINDRFGHAVGDSVLQEVARRISGSIRGGDVLARYGGEEFII
CCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHEECCCCEEEE
FLPGAGVDKACMIGERIRDAVAINEVDCGGLRVGVTISIGVATTGDMRCDLQMLAEKADR
EECCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEEEEEECCCCHHHHHHHHHHHHH
ALYRAKTEGRNCVREALAA
HHHHHHHCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8969498; 9384377 [H]