Definition | Agrobacterium tumefaciens str. C58 chromosome circular, complete sequence. |
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Accession | NC_003062 |
Length | 2,841,580 |
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The map label for this gene is yuaR [H]
Identifier: 159185085
GI number: 159185085
Start: 2141878
End: 2143392
Strand: Direct
Name: yuaR [H]
Synonym: Atu2171
Alternate gene names: 159185085
Gene position: 2141878-2143392 (Clockwise)
Preceding gene: 159185084
Following gene: 159185086
Centisome position: 75.38
GC content: 51.16
Gene sequence:
>1515_bases ATGATATCAATAAATTTATATATAAAAAACATCATTGTAATTACTACAGATTGCATCGCACTTTCCTTGATAATATTATT GTCACCACCTGCGGAAGCAGCTTCATCATCATTCAATAAATCACGTATAAACTGGCTGCCTTGCACCAAGCCTCAATTTA AATTTTGGTTCGAAGGCAGACTTCCGCCGCCTATGCTTGAATGCGCAAGAATGGCAGCACCGTTAATATATTCCAATCGG CGCGAGGCGGGTTCATCTCCACCCAGACGGCGAGTCTCGCTTGCGATCACAAGATTGCCTGCAACGGGCCGAAAACAAGG AAGCCTCGTCATTATTACGGGGGGTCCAGGGATGTCAGGCATTATTCAACTGCTCGACCCGAGAACAGACGCGGTCAAGC GGTTGAGAGAGTCATACGATATTATCCGCTACGATCCTCGTGGGGTCGGACAATCGACTCCAAAAATTTCATGTGCTTCA TACGTAAGCCGCGAAAACGCGCTGGTGGTTGACGACGCAGGCGATCGGGCGATGGCCGCCTATGTTGAAGCCTGCATAAA AACAACCGGGCGAACAGTTCTTGAACACATCGGTACGAACGAAGCGGTCGATGATCTCGATCTTCTGCGGCGGCAACTCG GGGAAGAGTTCCTTACGGCGATCGCTTACTCCTATGGGACCCAAGTCGCCGCTCTCTACGCGGAACGTTATCCTGGCTCA GTTCGGGCAATTGTATTGGACGGCGTCGTAGACCTCGCAGAGGACTGGCAAACGATGCGATTGAACCAGCAGCGTGGTTA TCAAAATACATTCGAACGCTTTGTTTCCTTTTGCAATCTGGAAAAATCGTGTCCCTTCAAGGACAGCGTCGAAAAAACAA CGGCCGATTTTCATCGACTGCTGCAAGCCGTCGACAACAGGCCGTTTTCAACAACCGGCGGCTACAGAGTGACGACGAGA GAGGTTCTGGCCGTCACGACCTACGGCCTGTTGTGGAAAACGCACTGGCCGACACTCGGCGAAGCCTTTGAAGCGCTATC GAACGGCAAAGCGGACAAGATCAAGGAATTGGCCGAAACAATACTGAAAGAAGACGAGATTGATGCTTCCGTGGCGATCA CCTGTGCAGATTCTGCATCTCCGACGAAGGATCGGCAGGAGCGAATCGCCCGCGCAAAGGCAGTCAAGGAAGCAGCTCCC TATGCCAACTATAACCCTGACGTCATAGAAATCAATGTCTGCGATATGTGGCCCTTCGCTGGCAAATTAAGCGCCCGCAT TCCCACTCTGCCCGACAACCTGCCCGCTTTGCTGTTTGTTGCTCAGAAATATGATCCGACCACGCCCCATATCAACGCGC GGCGTATGGCAGACTATTTTCGTAGCCCACTCGTCAGCAAAAACGCGGATGGTCACACTTTGGTACTTACGGGGTCCGAC AAGTGCGTCGATCAGGAAGTTACGAGTTATCTGTTGAAGCCAACAGAACCCAGACAAGACAAGGCTTGCGATTGA
Upstream 100 bases:
>100_bases ACGTATATTTATATAATTTTATTATTTAATCGAAAATATTAGTAAAATTATAAAGTAAATATCTCTATCATCATAGATTC CTAAATTATAGGAAAGCATT
Downstream 100 bases:
>100_bases GGCATCCCGTGAGGAACTCTTTTCGAGGCGCAGACGCGCCATGGCCGGATGACCACCCGACGGCCCGCTTTTAGCGGGCC GTTTTCATTTCGCGCTTCAC
Product: hydrolase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 504; Mature: 504
Protein sequence:
>504_residues MISINLYIKNIIVITTDCIALSLIILLSPPAEAASSSFNKSRINWLPCTKPQFKFWFEGRLPPPMLECARMAAPLIYSNR REAGSSPPRRRVSLAITRLPATGRKQGSLVIITGGPGMSGIIQLLDPRTDAVKRLRESYDIIRYDPRGVGQSTPKISCAS YVSRENALVVDDAGDRAMAAYVEACIKTTGRTVLEHIGTNEAVDDLDLLRRQLGEEFLTAIAYSYGTQVAALYAERYPGS VRAIVLDGVVDLAEDWQTMRLNQQRGYQNTFERFVSFCNLEKSCPFKDSVEKTTADFHRLLQAVDNRPFSTTGGYRVTTR EVLAVTTYGLLWKTHWPTLGEAFEALSNGKADKIKELAETILKEDEIDASVAITCADSASPTKDRQERIARAKAVKEAAP YANYNPDVIEINVCDMWPFAGKLSARIPTLPDNLPALLFVAQKYDPTTPHINARRMADYFRSPLVSKNADGHTLVLTGSD KCVDQEVTSYLLKPTEPRQDKACD
Sequences:
>Translated_504_residues MISINLYIKNIIVITTDCIALSLIILLSPPAEAASSSFNKSRINWLPCTKPQFKFWFEGRLPPPMLECARMAAPLIYSNR REAGSSPPRRRVSLAITRLPATGRKQGSLVIITGGPGMSGIIQLLDPRTDAVKRLRESYDIIRYDPRGVGQSTPKISCAS YVSRENALVVDDAGDRAMAAYVEACIKTTGRTVLEHIGTNEAVDDLDLLRRQLGEEFLTAIAYSYGTQVAALYAERYPGS VRAIVLDGVVDLAEDWQTMRLNQQRGYQNTFERFVSFCNLEKSCPFKDSVEKTTADFHRLLQAVDNRPFSTTGGYRVTTR EVLAVTTYGLLWKTHWPTLGEAFEALSNGKADKIKELAETILKEDEIDASVAITCADSASPTKDRQERIARAKAVKEAAP YANYNPDVIEINVCDMWPFAGKLSARIPTLPDNLPALLFVAQKYDPTTPHINARRMADYFRSPLVSKNADGHTLVLTGSD KCVDQEVTSYLLKPTEPRQDKACD >Mature_504_residues MISINLYIKNIIVITTDCIALSLIILLSPPAEAASSSFNKSRINWLPCTKPQFKFWFEGRLPPPMLECARMAAPLIYSNR REAGSSPPRRRVSLAITRLPATGRKQGSLVIITGGPGMSGIIQLLDPRTDAVKRLRESYDIIRYDPRGVGQSTPKISCAS YVSRENALVVDDAGDRAMAAYVEACIKTTGRTVLEHIGTNEAVDDLDLLRRQLGEEFLTAIAYSYGTQVAALYAERYPGS VRAIVLDGVVDLAEDWQTMRLNQQRGYQNTFERFVSFCNLEKSCPFKDSVEKTTADFHRLLQAVDNRPFSTTGGYRVTTR EVLAVTTYGLLWKTHWPTLGEAFEALSNGKADKIKELAETILKEDEIDASVAITCADSASPTKDRQERIARAKAVKEAAP YANYNPDVIEINVCDMWPFAGKLSARIPTLPDNLPALLFVAQKYDPTTPHINARRMADYFRSPLVSKNADGHTLVLTGSD KCVDQEVTSYLLKPTEPRQDKACD
Specific function: Unknown
COG id: COG0596
COG function: function code R; Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily)
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the peptidase S33 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000073 - InterPro: IPR013595 [H]
Pfam domain/function: PF00561 Abhydrolase_1; PF08386 Abhydrolase_4 [H]
EC number: NA
Molecular weight: Translated: 55939; Mature: 55939
Theoretical pI: Translated: 7.83; Mature: 7.83
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.2 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 2.2 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MISINLYIKNIIVITTDCIALSLIILLSPPAEAASSSFNKSRINWLPCTKPQFKFWFEGR CEEEEEEEEEEEEEEHHHHHHHHHHHCCCCHHHHHCCCCCCCCCCCCCCCCCCEEEECCC LPPPMLECARMAAPLIYSNRREAGSSPPRRRVSLAITRLPATGRKQGSLVIITGGPGMSG CCCHHHHHHHHHHHHHHCCCHHCCCCCCCCEEEEEEEECCCCCCCCCCEEEEECCCCHHH IIQLLDPRTDAVKRLRESYDIIRYDPRGVGQSTPKISCASYVSRENALVVDDAGDRAMAA HHHHHCCCHHHHHHHHHHCCEEEECCCCCCCCCCCCHHHHHHCCCCCEEEECCCCHHHHH YVEACIKTTGRTVLEHIGTNEAVDDLDLLRRQLGEEFLTAIAYSYGTQVAALYAERYPGS HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCC VRAIVLDGVVDLAEDWQTMRLNQQRGYQNTFERFVSFCNLEKSCPFKDSVEKTTADFHRL EEEEEEHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHH LQAVDNRPFSTTGGYRVTTREVLAVTTYGLLWKTHWPTLGEAFEALSNGKADKIKELAET HHHHCCCCCCCCCCEEEEHHHHHHHHHHHHHEECCCCCHHHHHHHHHCCCHHHHHHHHHH ILKEDEIDASVAITCADSASPTKDRQERIARAKAVKEAAPYANYNPDVIEINVCDMWPFA HHCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCC GKLSARIPTLPDNLPALLFVAQKYDPTTPHINARRMADYFRSPLVSKNADGHTLVLTGSD CCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHCCCCCCCCCCCEEEEECCC KCVDQEVTSYLLKPTEPRQDKACD HHHHHHHHHHHCCCCCCCCCCCCC >Mature Secondary Structure MISINLYIKNIIVITTDCIALSLIILLSPPAEAASSSFNKSRINWLPCTKPQFKFWFEGR CEEEEEEEEEEEEEEHHHHHHHHHHHCCCCHHHHHCCCCCCCCCCCCCCCCCCEEEECCC LPPPMLECARMAAPLIYSNRREAGSSPPRRRVSLAITRLPATGRKQGSLVIITGGPGMSG CCCHHHHHHHHHHHHHHCCCHHCCCCCCCCEEEEEEEECCCCCCCCCCEEEEECCCCHHH IIQLLDPRTDAVKRLRESYDIIRYDPRGVGQSTPKISCASYVSRENALVVDDAGDRAMAA HHHHHCCCHHHHHHHHHHCCEEEECCCCCCCCCCCCHHHHHHCCCCCEEEECCCCHHHHH YVEACIKTTGRTVLEHIGTNEAVDDLDLLRRQLGEEFLTAIAYSYGTQVAALYAERYPGS HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCC VRAIVLDGVVDLAEDWQTMRLNQQRGYQNTFERFVSFCNLEKSCPFKDSVEKTTADFHRL EEEEEEHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHH LQAVDNRPFSTTGGYRVTTREVLAVTTYGLLWKTHWPTLGEAFEALSNGKADKIKELAET HHHHCCCCCCCCCCEEEEHHHHHHHHHHHHHEECCCCCHHHHHHHHHCCCHHHHHHHHHH ILKEDEIDASVAITCADSASPTKDRQERIARAKAVKEAAPYANYNPDVIEINVCDMWPFA HHCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCC GKLSARIPTLPDNLPALLFVAQKYDPTTPHINARRMADYFRSPLVSKNADGHTLVLTGSD CCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHCCCCCCCCCCCEEEEECCC KCVDQEVTSYLLKPTEPRQDKACD HHHHHHHHHHHCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8288530 [H]