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The map label for this gene is omp [H]

Identifier: 159185080

GI number: 159185080

Start: 2127166

End: 2127795

Strand: Direct

Name: omp [H]

Synonym: Atu2159

Alternate gene names: 159185080

Gene position: 2127166-2127795 (Clockwise)

Preceding gene: 159185078

Following gene: 159185081

Centisome position: 74.86

GC content: 57.46

Gene sequence:

>630_bases
ATGAAAACGCTGATCGTAACGTCACTCCTGGCCCTGTCGGCCAGCACCGCAATGGCCGCGGATGCCGTCTACGAAACCCC
GGCCCCGCCGGTTGCGCAGGAAACCCTGCCGGTCTTCACCTGGTCTGGCCCCTATCTTGGTATTCAAGGTGGCGCAGGCT
GGGCAAATGGCGATTTTTCGGCGGGCGGCCCCGTTGTTTCGGATGATTTCAACGGCGGAATTCTCGGCGCCTTCGCCGGT
TACAATTACCAGTTCGACAATAACATGGTCCTCGGCATCGAGGGCGATGTCGATTATAACTGGAACGATAATGACTATTC
GGGCATCAAAGTCGGCACCGACTGGCAGGGCTCTGTCCGCGGTCGCGTCGGTTATGCCTTTGACCACGCATTGATCTATG
CCACCGCCGGCTGGACGGCCACCCGCGGTTTCATCGAAACGCCCGTCGGCGACGACAAAGCTACCTTCAACGGCTACACG
GTTGGCGCAGGTGTGGATTATGCCTTCACCGACAATGTCTTCGGCAGGCTGGAATATCGATATAACGACTATGGCGACAA
GGACATCTTCGGCATCAACACCGATTTCGACCAGCATACCGTGAAAGTGGGTCTCGGCGTGAAGTTCTGA

Upstream 100 bases:

>100_bases
GCCGGGAGGACAAAAACGCCTCTTGGAACCGCCGAACCCCAACCCATATTAAAAGTAGCTAATCTATGCTATGGATGTCA
GTCAGCTCAGGGAGAAAACG

Downstream 100 bases:

>100_bases
GTCGACCGCATAAGTTCAGTAAAAAGCCCGGCCATCCGCCGGGCTTTTTTGTGGGAAGCCTGCGTGGGCTATCCACCCAT
CCGAAGGTTTGAATATGAAC

Product: outer membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 209; Mature: 209

Protein sequence:

>209_residues
MKTLIVTSLLALSASTAMAADAVYETPAPPVAQETLPVFTWSGPYLGIQGGAGWANGDFSAGGPVVSDDFNGGILGAFAG
YNYQFDNNMVLGIEGDVDYNWNDNDYSGIKVGTDWQGSVRGRVGYAFDHALIYATAGWTATRGFIETPVGDDKATFNGYT
VGAGVDYAFTDNVFGRLEYRYNDYGDKDIFGINTDFDQHTVKVGLGVKF

Sequences:

>Translated_209_residues
MKTLIVTSLLALSASTAMAADAVYETPAPPVAQETLPVFTWSGPYLGIQGGAGWANGDFSAGGPVVSDDFNGGILGAFAG
YNYQFDNNMVLGIEGDVDYNWNDNDYSGIKVGTDWQGSVRGRVGYAFDHALIYATAGWTATRGFIETPVGDDKATFNGYT
VGAGVDYAFTDNVFGRLEYRYNDYGDKDIFGINTDFDQHTVKVGLGVKF
>Mature_209_residues
MKTLIVTSLLALSASTAMAADAVYETPAPPVAQETLPVFTWSGPYLGIQGGAGWANGDFSAGGPVVSDDFNGGILGAFAG
YNYQFDNNMVLGIEGDVDYNWNDNDYSGIKVGTDWQGSVRGRVGYAFDHALIYATAGWTATRGFIETPVGDDKATFNGYT
VGAGVDYAFTDNVFGRLEYRYNDYGDKDIFGINTDFDQHTVKVGLGVKF

Specific function: Unknown

COG id: COG3637

COG function: function code M; Opacity protein and related surface antigens

Gene ontology:

Cell location: Cell outer membrane [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the omp25/ropB family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011250
- InterPro:   IPR000498 [H]

Pfam domain/function: PF01389 OmpA_membrane [H]

EC number: NA

Molecular weight: Translated: 22405; Mature: 22405

Theoretical pI: Translated: 3.99; Mature: 3.99

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTLIVTSLLALSASTAMAADAVYETPAPPVAQETLPVFTWSGPYLGIQGGAGWANGDFS
CCHHHHHHHHHHHCCHHHHHHHEECCCCCCCCCCCCEEEEECCCEEEEECCCCCCCCCCC
AGGPVVSDDFNGGILGAFAGYNYQFDNNMVLGIEGDVDYNWNDNDYSGIKVGTDWQGSVR
CCCCEEECCCCCCEEEEECCCCEEECCCEEEEEECCCCCCCCCCCCCCEEECCCCCCCCC
GRVGYAFDHALIYATAGWTATRGFIETPVGDDKATFNGYTVGAGVDYAFTDNVFGRLEYR
CEEEEEECEEEEEEECCCEEECCEEECCCCCCCCEECCEEECCCCCEEEECCEEEEEEEE
YNDYGDKDIFGINTDFDQHTVKVGLGVKF
ECCCCCCEEEEECCCCCCEEEEEEEEECC
>Mature Secondary Structure
MKTLIVTSLLALSASTAMAADAVYETPAPPVAQETLPVFTWSGPYLGIQGGAGWANGDFS
CCHHHHHHHHHHHCCHHHHHHHEECCCCCCCCCCCCEEEEECCCEEEEECCCCCCCCCCC
AGGPVVSDDFNGGILGAFAGYNYQFDNNMVLGIEGDVDYNWNDNDYSGIKVGTDWQGSVR
CCCCEEECCCCCCEEEEECCCCEEECCCEEEEEECCCCCCCCCCCCCCEEECCCCCCCCC
GRVGYAFDHALIYATAGWTATRGFIETPVGDDKATFNGYTVGAGVDYAFTDNVFGRLEYR
CEEEEEECEEEEEEECCCEEECCEEECCCCCCCCEECCEEECCCCCEEEECCEEEEEEEE
YNDYGDKDIFGINTDFDQHTVKVGLGVKF
ECCCCCCEEEEECCCCCCEEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7896724 [H]