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The map label for this gene is ybiS [C]

Identifier: 159185065

GI number: 159185065

Start: 2098161

End: 2099543

Strand: Direct

Name: ybiS [C]

Synonym: Atu2133

Alternate gene names: 159185065

Gene position: 2098161-2099543 (Clockwise)

Preceding gene: 15889410

Following gene: 159185072

Centisome position: 73.84

GC content: 61.24

Gene sequence:

>1383_bases
GTGAAACATTTTCTTAACGCCGCTCTGGGTCTGACGGTCGCGCTGGCGTCGGTTTTCGCCCCGCTACAGGCTGGCGCGCA
GCAGCGTTATGGCGACCAACAGCAAACCATGCTGGTCACGCCGGATGGTCGTGTTCTCGACTTCATGCCCGAGCGTGGCG
ATATCGTCATCAGCCGTGACACGATGGGCCGCACAGTGTTTTACGACCGCTACGGCAATCTGCTGGCCACCGAAATGCCC
TCAGGCTATCAGCAACGGCAGCAGCAGGACACCACCTATTATCCGCCCGCCCCCGGCGGCCAGTACCGCGAGCCGCAGCG
CGACTATGGCTATCAGGACAATGGCAGCGTGCGCGATTATCGCGAATATCGCGGCGATGGCGCTGACGACAATGTCTATA
CCGGCTCCGTTCCCGCCCCCGGCTCGGTTGAAAGCGGGCCACTTGGCCAGCCGATGCCGGGCGAAAGCACCACGGCCGCC
GTTCCGCAGCCGGAGCACCTGATCGAACGCCACACGCCGGTCACGACGCCGGTTAACCGTTCACGCCAGGAAATCGTCGC
GCTCCAGACCTTCCTCGACCGCGAAGGCATTTCGCCCGGCGTGATCGACGGCAAGATGGGTGACAACGTCAACAAGGCAA
TTGCCGCCTGGCAGGACATGACCGGCGACAAGCTCGATCCGAACAATTCTGATGATATTCTGGAACGCCTGCGCGCTTCC
GGCGGCATGCCGATCGTGGATTATACGATCACCGCCGCCGATGCCGCTGGCCCCTATGTCGCCTCCATTCCCGACGATTA
TGCCGCGAAATCGCAGCTGCCGGCGCTCTCTTTCACGTCCACTTCGGAAGCGCTGGCGGAACGGTTCCACATGGATGAAA
ACTACCTGAAGGAGCTGAACCCGGGCATCGATTTCACCGTACCCGGCACCATTATCAAGGTCGTTAATCCTGGCGAGGCG
AAAAAGGGACAGGTCGCCCGCATCGTTGCCCATAAGGGCATCAAACAGGTCTTCGCTTACGGTCAGGACGGCAATCTGAT
CGCCGCTTACCCCGCCACCATCGGCTCCACGGATACCCCCTCGCCGAGCGGCACGCATACGGTGGAGCGCATCGCGCTCA
ATCCCGGCTACACCTATAATCCGAAGATCAATTTCAAGCAGGGCCAGAACGACAAAATCCTGCAAATTCCGCCGGGTCCG
AACGGCCCGGTTGGCACGGTCTGGATCGCTCTGTCGAAGCCGACCTACGGCATTCACGGCACGCCGGAACCGTCCAAGAT
CGGCAAGACCAACAGCCACGGCTGTATCCGCCTGACCAACTGGGACGCGACCGAACTGGCTAAGATGGTCCGCCCCGGCG
TTGTGGTCGAATTCGCCGAATAA

Upstream 100 bases:

>100_bases
GAGGAAAATTAAGATTGCATTAACCGCGAATTCACCTTTTTCACAATAGGGTCAAGATTAGCGTGTGTTTATCGGTGACG
AAGCAAGGGATAGCAGAATC

Downstream 100 bases:

>100_bases
AGCGACGGCAAGAAAAAAAGAAAGCCCGGCGGATTATGGTCCGCCGGGCTTTTTCATTTGTGGGGCTTTATGCGCGCTTT
TCCGTCAGGAAATACAGGAG

Product: hypothetical protein

Products: NA

Alternate protein names: Spore protein YkuD homolog [H]

Number of amino acids: Translated: 460; Mature: 460

Protein sequence:

>460_residues
MKHFLNAALGLTVALASVFAPLQAGAQQRYGDQQQTMLVTPDGRVLDFMPERGDIVISRDTMGRTVFYDRYGNLLATEMP
SGYQQRQQQDTTYYPPAPGGQYREPQRDYGYQDNGSVRDYREYRGDGADDNVYTGSVPAPGSVESGPLGQPMPGESTTAA
VPQPEHLIERHTPVTTPVNRSRQEIVALQTFLDREGISPGVIDGKMGDNVNKAIAAWQDMTGDKLDPNNSDDILERLRAS
GGMPIVDYTITAADAAGPYVASIPDDYAAKSQLPALSFTSTSEALAERFHMDENYLKELNPGIDFTVPGTIIKVVNPGEA
KKGQVARIVAHKGIKQVFAYGQDGNLIAAYPATIGSTDTPSPSGTHTVERIALNPGYTYNPKINFKQGQNDKILQIPPGP
NGPVGTVWIALSKPTYGIHGTPEPSKIGKTNSHGCIRLTNWDATELAKMVRPGVVVEFAE

Sequences:

>Translated_460_residues
MKHFLNAALGLTVALASVFAPLQAGAQQRYGDQQQTMLVTPDGRVLDFMPERGDIVISRDTMGRTVFYDRYGNLLATEMP
SGYQQRQQQDTTYYPPAPGGQYREPQRDYGYQDNGSVRDYREYRGDGADDNVYTGSVPAPGSVESGPLGQPMPGESTTAA
VPQPEHLIERHTPVTTPVNRSRQEIVALQTFLDREGISPGVIDGKMGDNVNKAIAAWQDMTGDKLDPNNSDDILERLRAS
GGMPIVDYTITAADAAGPYVASIPDDYAAKSQLPALSFTSTSEALAERFHMDENYLKELNPGIDFTVPGTIIKVVNPGEA
KKGQVARIVAHKGIKQVFAYGQDGNLIAAYPATIGSTDTPSPSGTHTVERIALNPGYTYNPKINFKQGQNDKILQIPPGP
NGPVGTVWIALSKPTYGIHGTPEPSKIGKTNSHGCIRLTNWDATELAKMVRPGVVVEFAE
>Mature_460_residues
MKHFLNAALGLTVALASVFAPLQAGAQQRYGDQQQTMLVTPDGRVLDFMPERGDIVISRDTMGRTVFYDRYGNLLATEMP
SGYQQRQQQDTTYYPPAPGGQYREPQRDYGYQDNGSVRDYREYRGDGADDNVYTGSVPAPGSVESGPLGQPMPGESTTAA
VPQPEHLIERHTPVTTPVNRSRQEIVALQTFLDREGISPGVIDGKMGDNVNKAIAAWQDMTGDKLDPNNSDDILERLRAS
GGMPIVDYTITAADAAGPYVASIPDDYAAKSQLPALSFTSTSEALAERFHMDENYLKELNPGIDFTVPGTIIKVVNPGEA
KKGQVARIVAHKGIKQVFAYGQDGNLIAAYPATIGSTDTPSPSGTHTVERIALNPGYTYNPKINFKQGQNDKILQIPPGP
NGPVGTVWIALSKPTYGIHGTPEPSKIGKTNSHGCIRLTNWDATELAKMVRPGVVVEFAE

Specific function: Probable enzyme that may play an important role in cell wall biology [H]

COG id: COG3409

COG function: function code M; Putative peptidoglycan-binding domain-containing protein

Gene ontology:

Cell location: Spore wall. Note=Probably localized either on the surface of the outer spore membrane and/or in the inner spore coat (By similarity) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI1787040, Length=187, Percent_Identity=28.3422459893048, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: 160 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 160 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018392
- InterPro:   IPR002482
- InterPro:   IPR005490 [H]

Pfam domain/function: PF01476 LysM; PF03734 YkuD [H]

EC number: NA

Molecular weight: Translated: 49824; Mature: 49824

Theoretical pI: Translated: 5.16; Mature: 5.16

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKHFLNAALGLTVALASVFAPLQAGAQQRYGDQQQTMLVTPDGRVLDFMPERGDIVISRD
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCEEEECCCCCCEEEECC
TMGRTVFYDRYGNLLATEMPSGYQQRQQQDTTYYPPAPGGQYREPQRDYGYQDNGSVRDY
CCCCEEEEECCCCEEEECCCCHHHHHHHCCCCCCCCCCCCCCCCCHHHCCCCCCCCCHHH
REYRGDGADDNVYTGSVPAPGSVESGPLGQPMPGESTTAAVPQPEHLIERHTPVTTPVNR
HHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCC
SRQEIVALQTFLDREGISPGVIDGKMGDNVNKAIAAWQDMTGDKLDPNNSDDILERLRAS
CHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHC
GGMPIVDYTITAADAAGPYVASIPDDYAAKSQLPALSFTSTSEALAERFHMDENYLKELN
CCCEEEEEEEEECCCCCCEEEECCCHHHHHHCCCEEEECCHHHHHHHHHCCCHHHHHHCC
PGIDFTVPGTIIKVVNPGEAKKGQVARIVAHKGIKQVFAYGQDGNLIAAYPATIGSTDTP
CCCCEECCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCC
SPSGTHTVERIALNPGYTYNPKINFKQGQNDKILQIPPGPNGPVGTVWIALSKPTYGIHG
CCCCCCEEEEEEECCCCEECCEEECCCCCCCCEEECCCCCCCCCEEEEEEECCCCCCCCC
TPEPSKIGKTNSHGCIRLTNWDATELAKMVRPGVVVEFAE
CCCHHHCCCCCCCCEEEECCCCHHHHHHHHCCCEEEEECC
>Mature Secondary Structure
MKHFLNAALGLTVALASVFAPLQAGAQQRYGDQQQTMLVTPDGRVLDFMPERGDIVISRD
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCEEEECCCCCCEEEECC
TMGRTVFYDRYGNLLATEMPSGYQQRQQQDTTYYPPAPGGQYREPQRDYGYQDNGSVRDY
CCCCEEEEECCCCEEEECCCCHHHHHHHCCCCCCCCCCCCCCCCCHHHCCCCCCCCCHHH
REYRGDGADDNVYTGSVPAPGSVESGPLGQPMPGESTTAAVPQPEHLIERHTPVTTPVNR
HHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCC
SRQEIVALQTFLDREGISPGVIDGKMGDNVNKAIAAWQDMTGDKLDPNNSDDILERLRAS
CHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHC
GGMPIVDYTITAADAAGPYVASIPDDYAAKSQLPALSFTSTSEALAERFHMDENYLKELN
CCCEEEEEEEEECCCCCCEEEECCCHHHHHHCCCEEEECCHHHHHHHHHCCCHHHHHHCC
PGIDFTVPGTIIKVVNPGEAKKGQVARIVAHKGIKQVFAYGQDGNLIAAYPATIGSTDTP
CCCCEECCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCC
SPSGTHTVERIALNPGYTYNPKINFKQGQNDKILQIPPGPNGPVGTVWIALSKPTYGIHG
CCCCCCEEEEEEECCCCEECCEEECCCCCCCCEEECCCCCCCCCEEEEEEECCCCCCCCC
TPEPSKIGKTNSHGCIRLTNWDATELAKMVRPGVVVEFAE
CCCHHHCCCCCCCCEEEECCCCHHHHHHHHCCCEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA