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The map label for this gene is lyc [H]

Identifier: 159185057

GI number: 159185057

Start: 2084742

End: 2085593

Strand: Direct

Name: lyc [H]

Synonym: Atu2121

Alternate gene names: 159185057

Gene position: 2084742-2085593 (Clockwise)

Preceding gene: 159185056

Following gene: 15889403

Centisome position: 73.37

GC content: 57.63

Gene sequence:

>852_bases
ATGCGTAAATCGGGAGATACGGCGCGCCGTTTTGCGGCCGCGGGATGGGCAACAATAATCATCAGGGTTCCAATGCGGCT
GCGTTTTTCGGCACTATTGTCGGCTTTGCTGTTGGTCAGCGGCTGCACGTCCACCAGTTACGACCTGCTGGAAACCGCAT
CCGTTTCCAGGCCGAAATTCTCCGATACCGACCCGCAGGATTTCGGCGTCAACAACCCGCACCGCCATGAGGTACACGGC
ATCGACGTGTCCAAATGGAATGGCGATGTCGACTGGCAAACCGTGCGCAAATCCGGCGTCTCCTTCGTTTTCATCAAGGC
AACGGAAGGGTCGGACCGTATCGATCCGAAATTCGGTGACCATTGGCGCAGCGCGGCCTCGGCGAATATTCTGCATGCGC
CTTACCACTTCTATTATTTCTGTTCGACGGCGGACGCTCAAGCCGACTGGTTCATCAGCAACGTGCCGAAAGAAGCCGTC
ACCCTGCCGCCGGTTCTCGACGTGGAGTGGAATCCTTCCTCCCCCACCTGCAAGACCCGCCCTGCCCCGGGTATCGTGCG
CGCCGAAATGCAGCGCTTCCTCGACCGCCTCGAGGCCCATTATGGGAAGCGCCCGATCATCTATACCTCGGTCGATTTCC
ACCGTGACAATCTCGTCGGCCAGTTCAAGGACTACCATTTCTGGGTGCGTTCCGTCGCCGCCCATCCGGCCAAGATTTAC
GAAGACCGGAAATGGGCCTTTTGGCAATATACCGCAACCGGCGTCGTACCCGGCGTGAACGGCCCCACCGACATCAATGT
ATTTGCCGGAAGTGAGAAAAACTGGCGAAAATGGATTGCTTCCGCCAAATAA

Upstream 100 bases:

>100_bases
CCCAATCTCCGCACTAAAACCGCAAATCGCTTGGAATCCAGCAACTTGCGAGGTGCAAAAAACGCGCTCCCCCTTGCCAT
ATCAGTTTGTTTACCATGTT

Downstream 100 bases:

>100_bases
GGCGGCCAAGAAGCAACACTTTCGAAAAATCGGCGTTGTTCTGCAACGCCAGATCGTCCGGTCCGTTTTTTTGTCGCAAA
CATATGGGTAAAGCGGGCCA

Product: glycosyl hydrolase/lysozyme

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 283; Mature: 283

Protein sequence:

>283_residues
MRKSGDTARRFAAAGWATIIIRVPMRLRFSALLSALLLVSGCTSTSYDLLETASVSRPKFSDTDPQDFGVNNPHRHEVHG
IDVSKWNGDVDWQTVRKSGVSFVFIKATEGSDRIDPKFGDHWRSAASANILHAPYHFYYFCSTADAQADWFISNVPKEAV
TLPPVLDVEWNPSSPTCKTRPAPGIVRAEMQRFLDRLEAHYGKRPIIYTSVDFHRDNLVGQFKDYHFWVRSVAAHPAKIY
EDRKWAFWQYTATGVVPGVNGPTDINVFAGSEKNWRKWIASAK

Sequences:

>Translated_283_residues
MRKSGDTARRFAAAGWATIIIRVPMRLRFSALLSALLLVSGCTSTSYDLLETASVSRPKFSDTDPQDFGVNNPHRHEVHG
IDVSKWNGDVDWQTVRKSGVSFVFIKATEGSDRIDPKFGDHWRSAASANILHAPYHFYYFCSTADAQADWFISNVPKEAV
TLPPVLDVEWNPSSPTCKTRPAPGIVRAEMQRFLDRLEAHYGKRPIIYTSVDFHRDNLVGQFKDYHFWVRSVAAHPAKIY
EDRKWAFWQYTATGVVPGVNGPTDINVFAGSEKNWRKWIASAK
>Mature_283_residues
MRKSGDTARRFAAAGWATIIIRVPMRLRFSALLSALLLVSGCTSTSYDLLETASVSRPKFSDTDPQDFGVNNPHRHEVHG
IDVSKWNGDVDWQTVRKSGVSFVFIKATEGSDRIDPKFGDHWRSAASANILHAPYHFYYFCSTADAQADWFISNVPKEAV
TLPPVLDVEWNPSSPTCKTRPAPGIVRAEMQRFLDRLEAHYGKRPIIYTSVDFHRDNLVGQFKDYHFWVRSVAAHPAKIY
EDRKWAFWQYTATGVVPGVNGPTDINVFAGSEKNWRKWIASAK

Specific function: Unknown

COG id: COG3757

COG function: function code M; Lyzozyme M1 (1,4-beta-N-acetylmuramidase)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyl hydrolase 25 family [H]

Homologues:

Organism=Escherichia coli, GI87082043, Length=281, Percent_Identity=31.3167259786477, Blast_Score=136, Evalue=1e-33,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002053
- InterPro:   IPR008270
- InterPro:   IPR017853
- InterPro:   IPR018077
- InterPro:   IPR013781 [H]

Pfam domain/function: PF01183 Glyco_hydro_25 [H]

EC number: NA

Molecular weight: Translated: 32007; Mature: 32007

Theoretical pI: Translated: 9.47; Mature: 9.47

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRKSGDTARRFAAAGWATIIIRVPMRLRFSALLSALLLVSGCTSTSYDLLETASVSRPKF
CCCCCCHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCC
SDTDPQDFGVNNPHRHEVHGIDVSKWNGDVDWQTVRKSGVSFVFIKATEGSDRIDPKFGD
CCCCCHHCCCCCCCCCEEECCEEECCCCCCCHHHHHHCCCEEEEEEECCCCCCCCCCCCH
HWRSAASANILHAPYHFYYFCSTADAQADWFISNVPKEAVTLPPVLDVEWNPSSPTCKTR
HHHHHHCCCEEECCEEEEEEEECCCCCCCHHHHCCCHHHEECCCEEEEEECCCCCCCCCC
PAPGIVRAEMQRFLDRLEAHYGKRPIIYTSVDFHRDNLVGQFKDYHFWVRSVAAHPAKIY
CCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCHHHH
EDRKWAFWQYTATGVVPGVNGPTDINVFAGSEKNWRKWIASAK
CCCCEEEEEEEECCCCCCCCCCCEEEEEECCCHHHHHHHHCCC
>Mature Secondary Structure
MRKSGDTARRFAAAGWATIIIRVPMRLRFSALLSALLLVSGCTSTSYDLLETASVSRPKF
CCCCCCHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCC
SDTDPQDFGVNNPHRHEVHGIDVSKWNGDVDWQTVRKSGVSFVFIKATEGSDRIDPKFGD
CCCCCHHCCCCCCCCCEEECCEEECCCCCCCHHHHHHCCCEEEEEEECCCCCCCCCCCCH
HWRSAASANILHAPYHFYYFCSTADAQADWFISNVPKEAVTLPPVLDVEWNPSSPTCKTR
HHHHHHCCCEEECCEEEEEEEECCCCCCCHHHHCCCHHHEECCCEEEEEECCCCCCCCCC
PAPGIVRAEMQRFLDRLEAHYGKRPIIYTSVDFHRDNLVGQFKDYHFWVRSVAAHPAKIY
CCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCHHHH
EDRKWAFWQYTATGVVPGVNGPTDINVFAGSEKNWRKWIASAK
CCCCEEEEEEEECCCCCCCCCCCEEEEEECCCHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]