Definition | Agrobacterium tumefaciens str. C58 chromosome circular, complete sequence. |
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Accession | NC_003062 |
Length | 2,841,580 |
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The map label for this gene is yjfL [H]
Identifier: 159185049
GI number: 159185049
Start: 2069732
End: 2070133
Strand: Direct
Name: yjfL [H]
Synonym: Atu2104
Alternate gene names: 159185049
Gene position: 2069732-2070133 (Clockwise)
Preceding gene: 15889374
Following gene: 15889388
Centisome position: 72.84
GC content: 56.97
Gene sequence:
>402_bases ATGACAATATACGCGGCCGGTTTACCCGCATTTCTAAGTTATTTCAGCATCGGCCTAGTGTGTTTTGCGATTTTTTCCAC CATTTACACGCGCCTGACGCCACACGAAGAAGTTGAGCTCATCAAGGCTGGAAATATTTCGGCGGTGGTCGCCTTTCTAG GCGCCCTGATCGGCTTCAGCCTTCCGCTGGCATCGGCGGCGGCCCATTCGGTCAGCCTGCCCGACTACGTGATCTGGGCA GCGATCGGCCTGCTGGTGCAAGTCCTTGCGTTCTACATCGCCAAGCTCACCATGACCGACCTGCATTTGAAAATCACGGA GGGTAATGTCGCGGCCGGGCTCTGGAGCGGCGGCATCGCCGTGGTCATCGGGACTTTGAATGCCGCCTGCATGGCGTATT GA
Upstream 100 bases:
>100_bases ACGGACCACGTTGAGATCGAATACGGCCAATGAGAGCTTGACTTTTTAAACTTTCAATTGATTTTATACTCCTCAAATTG ATTTTTATTGAGATATAATG
Downstream 100 bases:
>100_bases GGAACAGACATGCATCTGGACGTGACAGAACATCCGCGTCTTGCCCTGGGCACGATTGCCGCGATAGGCCTTTTTATGGC TTTTTCAACCGAGGAAGAGG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 133; Mature: 132
Protein sequence:
>133_residues MTIYAAGLPAFLSYFSIGLVCFAIFSTIYTRLTPHEEVELIKAGNISAVVAFLGALIGFSLPLASAAAHSVSLPDYVIWA AIGLLVQVLAFYIAKLTMTDLHLKITEGNVAAGLWSGGIAVVIGTLNAACMAY
Sequences:
>Translated_133_residues MTIYAAGLPAFLSYFSIGLVCFAIFSTIYTRLTPHEEVELIKAGNISAVVAFLGALIGFSLPLASAAAHSVSLPDYVIWA AIGLLVQVLAFYIAKLTMTDLHLKITEGNVAAGLWSGGIAVVIGTLNAACMAY >Mature_132_residues TIYAAGLPAFLSYFSIGLVCFAIFSTIYTRLTPHEEVELIKAGNISAVVAFLGALIGFSLPLASAAAHSVSLPDYVIWAA IGLLVQVLAFYIAKLTMTDLHLKITEGNVAAGLWSGGIAVVIGTLNAACMAY
Specific function: Unknown
COG id: COG3766
COG function: function code S; Predicted membrane protein
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0719 family [H]
Homologues:
Organism=Escherichia coli, GI1790627, Length=126, Percent_Identity=46.031746031746, Blast_Score=108, Evalue=1e-25,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR007140 [H]
Pfam domain/function: PF03994 DUF350 [H]
EC number: NA
Molecular weight: Translated: 13940; Mature: 13808
Theoretical pI: Translated: 6.22; Mature: 6.22
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTIYAAGLPAFLSYFSIGLVCFAIFSTIYTRLTPHEEVELIKAGNISAVVAFLGALIGFS CEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCHHHHHHHHHHHHHHH LPLASAAAHSVSLPDYVIWAAIGLLVQVLAFYIAKLTMTDLHLKITEGNVAAGLWSGGIA HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCEEEHHHCCCHH VVIGTLNAACMAY EEHHHHHHHHHCC >Mature Secondary Structure TIYAAGLPAFLSYFSIGLVCFAIFSTIYTRLTPHEEVELIKAGNISAVVAFLGALIGFS EEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCHHHHHHHHHHHHHHH LPLASAAAHSVSLPDYVIWAAIGLLVQVLAFYIAKLTMTDLHLKITEGNVAAGLWSGGIA HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCEEEHHHCCCHH VVIGTLNAACMAY EEHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]