Definition | Agrobacterium tumefaciens str. C58 chromosome circular, complete sequence. |
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Accession | NC_003062 |
Length | 2,841,580 |
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The map label for this gene is 159185022
Identifier: 159185022
GI number: 159185022
Start: 1996183
End: 1998189
Strand: Direct
Name: 159185022
Synonym: Atu2038
Alternate gene names: NA
Gene position: 1996183-1998189 (Clockwise)
Preceding gene: 15889320
Following gene: 15889327
Centisome position: 70.25
GC content: 60.84
Gene sequence:
>2007_bases GTGAATAACGACACGTCTCATAACGCGTCCCGCATGGACGAAAACGAACGGCGATCCGGCGAGCAACCGGCAAACCGCAT GCTCGGCCGCGTCATCGCGTGTAACGGCGCGCACGCCACCATTGCCGCAGAAACGGAACCCGGCTCCACCGATGTGTCGC AGCTCTGGTCCGTCGGACGCCTGATCTCCATCGAAATGGGCACGAGCCGTGTCACCGCGCTGGTCTTTTCCATGCGCACC GGCGACGACCACTGGGCAGCGGACAAGCCAAACAGGCTGCTGATCGACGTGGAACTCGTGGGTGAAGTGTATCGCACCGA AGACGGCAGCGAACGTTTTTCCACCGGCATCTCCCGTTACCCTTATCTCGGCGCGGTGGCGCACCGCATCCGCACCAGCG ACCTTGCAAAGATTTACGACAGCGGCAAACGCGATGCCTGTGTCATCGGCAAGCTGACGCAGGACGACACGATCAACGCG GCGATCAGCATTCCTCAGATGCTTGCCAAACATTTCGCCGTCGTCGGATCGACGGGCGTGGGCAAGACCACCGCCGTTTC GCTGCTTCTGAACAAGGCGATCGAGACCGACCCGAAACTGCGCGTCCTCATTCTCGATCCGCATAATGAATTCGCGGCTG CTTTTCCCGATCATTCCGTCGTCATCGATACCGATACGCTGGACCTTCCCTTCTGGCTGATGCGGCTCGAGGAATTTGCC GAGGTGATTTTCCGCGGCCGCAAGCCCGTGCCGGAAGAGATGGATTTCCTCCGGGACCTCATTCCCGAAGCAAAAAAGGC ATTTCGCGGCACCGAAGGTTCCGCCGTCCGCCGTACATCCGACAAGAGCGCGATCACGCCGGATACGCCGGTGCCATACC GCATCGCCGATCTTCTCGCCCTCATCGATGAGCGCATCGGAAGGCTGGAAGGCCGCGGCGAAAAACCCGCCTTGCGCACG CTGAAGGGCCGCATCCTCTCGGCCGTCAACGATACGCGCTATAATTTCATGTTCTCGAGCAATACGATCAACGACAACAT TCTCGAGACGGTCGCGCATATCTTCCGCATCCCCGGGGAAGGCAAGCCGATTTCGGTTTTCCAATTGTCAGGCATCCCCT CCGAAGTGGTGAATTCGGTGGTCTCGGTGCTCTGCCGCATGTCCTTCGAGCTGGCGGTTCTGGCGCGCGGTTCGCTGCAT ATGCTTATCGTCTGCGAAGAAGCGCACCGTTATGTTCCGGCTGATCCCGAGCGTGGCTTTTTCCCCACCCGGCAATCCAT CGCCCAGATCGCCAAGGAAGGCCGCAAATACGGCATTTCACTCGGCGTCATCAGCCAACGGCCAAGCGAGCTGGACCAGA CCATCCTGTCGCAATGCTCGACCGTGTTCGCCATGCGGCTGTCGAACGAGATCGACCAGAAGATCATTCTCTCCGCCGTG CCGAACGCTTCGACCTCGACTACGAGCTTTCTCTCCTCCATCGGCAATGGCGAAGCCATCGCCTTCGGTGAGGCCGTGAA CGTGCCGATGCGCATGCGCTTCGACCGTGTAGCCACGGCCAAGCTGCCGAAGGCGAGCGGCACGTCCAGCCATATGAACC ATGAAACCCCTGACACGGTCGACCTGAACAGCATAGTCACCCGCATGCGCGCCACGGCCAAACCCGTTATCACCGGCTTC CAGCAAAGCGTGGAAGCGGCTTTTTCCGACCAGCCAGAACCGTCCGTATTCCAGACGGCAGACGACATCGATCGCTGGAA GCGAGAATTGGGAACGCCCGCAACGGGGGGATACGAACCCTACCGCCCGGATATGCTGCCCGGACGCACACCGCCTGTGC CATCCAATGCGGCGTCAACGGACCCCACCGCCGGCGCCGTCAACGATCTGCGCAAGGCGGGTTTCCAGATGCAGGCGCAG AATGGCCCGCCGCCCGGTGAGACGCGCCCCTCGTTGCGCGAAAGCCTGTTGAAAAAACCGCTCGGCAGCCTCTACCGCAA GGATTAG
Upstream 100 bases:
>100_bases AACGCGACCAATACACCTGTTGTTAAGCATAATCTTTTAGTCTCGAAAGCGCAGATGCTGCCCGAACCACCGCGATCATC CGCATGTACCGGGAAAAAAT
Downstream 100 bases:
>100_bases GCCCCTTTCACGGCTGGATGCGCGTCCAGTCATCCCCCATCTGGTTGCGGAACCAGGTCATCTGCCGTTTGGCATATTGG CGGGTCGCAGCCGCCGATTT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 668; Mature: 668
Protein sequence:
>668_residues MNNDTSHNASRMDENERRSGEQPANRMLGRVIACNGAHATIAAETEPGSTDVSQLWSVGRLISIEMGTSRVTALVFSMRT GDDHWAADKPNRLLIDVELVGEVYRTEDGSERFSTGISRYPYLGAVAHRIRTSDLAKIYDSGKRDACVIGKLTQDDTINA AISIPQMLAKHFAVVGSTGVGKTTAVSLLLNKAIETDPKLRVLILDPHNEFAAAFPDHSVVIDTDTLDLPFWLMRLEEFA EVIFRGRKPVPEEMDFLRDLIPEAKKAFRGTEGSAVRRTSDKSAITPDTPVPYRIADLLALIDERIGRLEGRGEKPALRT LKGRILSAVNDTRYNFMFSSNTINDNILETVAHIFRIPGEGKPISVFQLSGIPSEVVNSVVSVLCRMSFELAVLARGSLH MLIVCEEAHRYVPADPERGFFPTRQSIAQIAKEGRKYGISLGVISQRPSELDQTILSQCSTVFAMRLSNEIDQKIILSAV PNASTSTTSFLSSIGNGEAIAFGEAVNVPMRMRFDRVATAKLPKASGTSSHMNHETPDTVDLNSIVTRMRATAKPVITGF QQSVEAAFSDQPEPSVFQTADDIDRWKRELGTPATGGYEPYRPDMLPGRTPPVPSNAASTDPTAGAVNDLRKAGFQMQAQ NGPPPGETRPSLRESLLKKPLGSLYRKD
Sequences:
>Translated_668_residues MNNDTSHNASRMDENERRSGEQPANRMLGRVIACNGAHATIAAETEPGSTDVSQLWSVGRLISIEMGTSRVTALVFSMRT GDDHWAADKPNRLLIDVELVGEVYRTEDGSERFSTGISRYPYLGAVAHRIRTSDLAKIYDSGKRDACVIGKLTQDDTINA AISIPQMLAKHFAVVGSTGVGKTTAVSLLLNKAIETDPKLRVLILDPHNEFAAAFPDHSVVIDTDTLDLPFWLMRLEEFA EVIFRGRKPVPEEMDFLRDLIPEAKKAFRGTEGSAVRRTSDKSAITPDTPVPYRIADLLALIDERIGRLEGRGEKPALRT LKGRILSAVNDTRYNFMFSSNTINDNILETVAHIFRIPGEGKPISVFQLSGIPSEVVNSVVSVLCRMSFELAVLARGSLH MLIVCEEAHRYVPADPERGFFPTRQSIAQIAKEGRKYGISLGVISQRPSELDQTILSQCSTVFAMRLSNEIDQKIILSAV PNASTSTTSFLSSIGNGEAIAFGEAVNVPMRMRFDRVATAKLPKASGTSSHMNHETPDTVDLNSIVTRMRATAKPVITGF QQSVEAAFSDQPEPSVFQTADDIDRWKRELGTPATGGYEPYRPDMLPGRTPPVPSNAASTDPTAGAVNDLRKAGFQMQAQ NGPPPGETRPSLRESLLKKPLGSLYRKD >Mature_668_residues MNNDTSHNASRMDENERRSGEQPANRMLGRVIACNGAHATIAAETEPGSTDVSQLWSVGRLISIEMGTSRVTALVFSMRT GDDHWAADKPNRLLIDVELVGEVYRTEDGSERFSTGISRYPYLGAVAHRIRTSDLAKIYDSGKRDACVIGKLTQDDTINA AISIPQMLAKHFAVVGSTGVGKTTAVSLLLNKAIETDPKLRVLILDPHNEFAAAFPDHSVVIDTDTLDLPFWLMRLEEFA EVIFRGRKPVPEEMDFLRDLIPEAKKAFRGTEGSAVRRTSDKSAITPDTPVPYRIADLLALIDERIGRLEGRGEKPALRT LKGRILSAVNDTRYNFMFSSNTINDNILETVAHIFRIPGEGKPISVFQLSGIPSEVVNSVVSVLCRMSFELAVLARGSLH MLIVCEEAHRYVPADPERGFFPTRQSIAQIAKEGRKYGISLGVISQRPSELDQTILSQCSTVFAMRLSNEIDQKIILSAV PNASTSTTSFLSSIGNGEAIAFGEAVNVPMRMRFDRVATAKLPKASGTSSHMNHETPDTVDLNSIVTRMRATAKPVITGF QQSVEAAFSDQPEPSVFQTADDIDRWKRELGTPATGGYEPYRPDMLPGRTPPVPSNAASTDPTAGAVNDLRKAGFQMQAQ NGPPPGETRPSLRESLLKKPLGSLYRKD
Specific function: Unknown
COG id: COG0433
COG function: function code R; Predicted ATPase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: To M.jannaschii MJ1429 and MJ1565 [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR008571 - InterPro: IPR002789 - InterPro: IPR018538 [H]
Pfam domain/function: PF05872 DUF853; PF01935 DUF87; PF09378 HAS-barrel [H]
EC number: NA
Molecular weight: Translated: 73133; Mature: 73133
Theoretical pI: Translated: 6.80; Mature: 6.80
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNNDTSHNASRMDENERRSGEQPANRMLGRVIACNGAHATIAAETEPGSTDVSQLWSVGR CCCCCCCCHHHCCCHHHHCCCCHHHHHHHEEEEECCCCEEEEECCCCCCCCHHHHHHCCC LISIEMGTSRVTALVFSMRTGDDHWAADKPNRLLIDVELVGEVYRTEDGSERFSTGISRY EEEEECCCHHHHHHHEEECCCCCCCCCCCCCEEEEEHHHHHHHHHCCCCHHHHHHCHHCC PYLGAVAHRIRTSDLAKIYDSGKRDACVIGKLTQDDTINAAISIPQMLAKHFAVVGSTGV CHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCC GKTTAVSLLLNKAIETDPKLRVLILDPHNEFAAAFPDHSVVIDTDTLDLPFWLMRLEEFA CHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHCCCCCEEEEECCCCCHHHHHHHHHHHH EVIFRGRKPVPEEMDFLRDLIPEAKKAFRGTEGSAVRRTSDKSAITPDTPVPYRIADLLA HHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCCCCCHHHHHHHH LIDERIGRLEGRGEKPALRTLKGRILSAVNDTRYNFMFSSNTINDNILETVAHIFRIPGE HHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHHHCCCCC GKPISVFQLSGIPSEVVNSVVSVLCRMSFELAVLARGSLHMLIVCEEAHRYVPADPERGF CCCEEEEEECCCCHHHHHHHHHHHHHHHHHEEEEECCCEEEEEEEECCCCCCCCCCCCCC FPTRQSIAQIAKEGRKYGISLGVISQRPSELDQTILSQCSTVFAMRLSNEIDQKIILSAV CCCHHHHHHHHHHHHHHCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC PNASTSTTSFLSSIGNGEAIAFGEAVNVPMRMRFDRVATAKLPKASGTSSHMNHETPDTV CCCCCHHHHHHHHCCCCCEEEECCHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC DLNSIVTRMRATAKPVITGFQQSVEAAFSDQPEPSVFQTADDIDRWKRELGTPATGGYEP CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCC YRPDMLPGRTPPVPSNAASTDPTAGAVNDLRKAGFQMQAQNGPPPGETRPSLRESLLKKP CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCEEEECCCCCCCCCCHHHHHHHHHHH LGSLYRKD HHHHHCCC >Mature Secondary Structure MNNDTSHNASRMDENERRSGEQPANRMLGRVIACNGAHATIAAETEPGSTDVSQLWSVGR CCCCCCCCHHHCCCHHHHCCCCHHHHHHHEEEEECCCCEEEEECCCCCCCCHHHHHHCCC LISIEMGTSRVTALVFSMRTGDDHWAADKPNRLLIDVELVGEVYRTEDGSERFSTGISRY EEEEECCCHHHHHHHEEECCCCCCCCCCCCCEEEEEHHHHHHHHHCCCCHHHHHHCHHCC PYLGAVAHRIRTSDLAKIYDSGKRDACVIGKLTQDDTINAAISIPQMLAKHFAVVGSTGV CHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCC GKTTAVSLLLNKAIETDPKLRVLILDPHNEFAAAFPDHSVVIDTDTLDLPFWLMRLEEFA CHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHCCCCCEEEEECCCCCHHHHHHHHHHHH EVIFRGRKPVPEEMDFLRDLIPEAKKAFRGTEGSAVRRTSDKSAITPDTPVPYRIADLLA HHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCCCCCHHHHHHHH LIDERIGRLEGRGEKPALRTLKGRILSAVNDTRYNFMFSSNTINDNILETVAHIFRIPGE HHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHHHCCCCC GKPISVFQLSGIPSEVVNSVVSVLCRMSFELAVLARGSLHMLIVCEEAHRYVPADPERGF CCCEEEEEECCCCHHHHHHHHHHHHHHHHHEEEEECCCEEEEEEEECCCCCCCCCCCCCC FPTRQSIAQIAKEGRKYGISLGVISQRPSELDQTILSQCSTVFAMRLSNEIDQKIILSAV CCCHHHHHHHHHHHHHHCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC PNASTSTTSFLSSIGNGEAIAFGEAVNVPMRMRFDRVATAKLPKASGTSSHMNHETPDTV CCCCCHHHHHHHHCCCCCEEEECCHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC DLNSIVTRMRATAKPVITGFQQSVEAAFSDQPEPSVFQTADDIDRWKRELGTPATGGYEP CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCC YRPDMLPGRTPPVPSNAASTDPTAGAVNDLRKAGFQMQAQNGPPPGETRPSLRESLLKKP CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCEEEECCCCCCCCCCHHHHHHHHHHH LGSLYRKD HHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8688087 [H]