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The map label for this gene is yedY

Identifier: 159184979

GI number: 159184979

Start: 1897621

End: 1898562

Strand: Direct

Name: yedY

Synonym: Atu1919

Alternate gene names: 159184979

Gene position: 1897621-1898562 (Clockwise)

Preceding gene: 15889210

Following gene: 15889214

Centisome position: 66.78

GC content: 57.86

Gene sequence:

>942_bases
ATGCCCGCTTATCGTCCGCCCCATATCGCGTCTTCAGAGATAACGCCCAAATCCTTCTACCTGTCCCGACGCAACTTCCT
CGGAACGGCGGCTGGCCTTGCTGCCATAGGGCTGGCCGGACGCGAAGCCATTGCCGCACCACTCTCCGCCAAGCCCGGTG
CATACAAGCTGGATGAGAAACTCACCCCGCTCGACGCCGTCACCAGCTACAATAATTTCTACGAATTCGGTGTCGGCAAG
TCCGACCCGAAGGAAAATTCAGGCAAGTTCAAGCCAACGCCTTGGACTGTGAAGGTGGATGGCCTCGTTTCCAAGCCGCA
GGAATTCGGTATCGAAGAGCTGATGAAATATCCGCTTGAGGAGCGCACCTATCGCATGCGCTGCGTTGAAGGCTGGTCAA
TGGTCATTCCCTGGATCGGTTTTCCGCTGTCTGCCCTGCTCGACAAGGTGGAGCCGCTTGGCAGCGCGAAATACGTGTCC
TTCGAGACGGTCGTCCGCCCGGAGGAAATGCCCGGTCAGAGCGGCCTGTTCCAGCCTCTGTCCTGGCCCTATGTCGAAGG
CCTGCGCCTCGATGAAGCCCGTCATCCGCTGACCATCCTCGCCGTCGGGCTTTACGGAGAAACCCTGCCGAACCAGAACG
GCGCACCGATCCGGCTTGTCGTGCCGTGGAAATACGGTTTCAAAGGCATCAAATCCATCATGCGGATTTCGCTTGTGGAA
AAACAGCCGGAAACGACGTGGAAGAACTCCAACGCCCGCGAATATGGCTTCTATTCCAACGTCAATCCGCATGTGGACCA
TCCACGCTGGAGCCAGGCGACGGAACAGCGCATCGGCGAAGGAGGCTTTTTCGGCACGCAAAACCGCCCTACCCTGATGT
TCAACGGTTATGACGACGTCGCGAGCCTCTATACCGGGCTGGATCTGAAAGCGAATTACTGA

Upstream 100 bases:

>100_bases
GTTGTTTTTCCGCAGAGTGCTGAAACATATCTGTGCAGCGACCGTATTGGCTATCATAATCGATTTATCGCCGATGCACC
CGGCTTTTGTGGAGGTTTTT

Downstream 100 bases:

>100_bases
TCATGGCCTTTGCCCTGTCGCTTCCGTCGCTGCCCAAGCGTTACCAGCCGGCGGCCATCTGGTCGCTGTATGTCATCGGC
CTCTGTCCCGGCCTCTGGTA

Product: putative sulfite oxidase subunit YedY

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 313; Mature: 312

Protein sequence:

>313_residues
MPAYRPPHIASSEITPKSFYLSRRNFLGTAAGLAAIGLAGREAIAAPLSAKPGAYKLDEKLTPLDAVTSYNNFYEFGVGK
SDPKENSGKFKPTPWTVKVDGLVSKPQEFGIEELMKYPLEERTYRMRCVEGWSMVIPWIGFPLSALLDKVEPLGSAKYVS
FETVVRPEEMPGQSGLFQPLSWPYVEGLRLDEARHPLTILAVGLYGETLPNQNGAPIRLVVPWKYGFKGIKSIMRISLVE
KQPETTWKNSNAREYGFYSNVNPHVDHPRWSQATEQRIGEGGFFGTQNRPTLMFNGYDDVASLYTGLDLKANY

Sequences:

>Translated_313_residues
MPAYRPPHIASSEITPKSFYLSRRNFLGTAAGLAAIGLAGREAIAAPLSAKPGAYKLDEKLTPLDAVTSYNNFYEFGVGK
SDPKENSGKFKPTPWTVKVDGLVSKPQEFGIEELMKYPLEERTYRMRCVEGWSMVIPWIGFPLSALLDKVEPLGSAKYVS
FETVVRPEEMPGQSGLFQPLSWPYVEGLRLDEARHPLTILAVGLYGETLPNQNGAPIRLVVPWKYGFKGIKSIMRISLVE
KQPETTWKNSNAREYGFYSNVNPHVDHPRWSQATEQRIGEGGFFGTQNRPTLMFNGYDDVASLYTGLDLKANY
>Mature_312_residues
PAYRPPHIASSEITPKSFYLSRRNFLGTAAGLAAIGLAGREAIAAPLSAKPGAYKLDEKLTPLDAVTSYNNFYEFGVGKS
DPKENSGKFKPTPWTVKVDGLVSKPQEFGIEELMKYPLEERTYRMRCVEGWSMVIPWIGFPLSALLDKVEPLGSAKYVSF
ETVVRPEEMPGQSGLFQPLSWPYVEGLRLDEARHPLTILAVGLYGETLPNQNGAPIRLVVPWKYGFKGIKSIMRISLVEK
QPETTWKNSNAREYGFYSNVNPHVDHPRWSQATEQRIGEGGFFGTQNRPTLMFNGYDDVASLYTGLDLKANY

Specific function: The exact function is not known. Can catalyze the reduction of a variety of substrates like dimethyl sulfoxide, trimethylamine N-oxide, phenylmethyl sulfoxide and L-methionine sulfoxide. Cannot reduce cyclic N-oxides. Shows no activity as sulfite oxidase

COG id: COG2041

COG function: function code R; Sulfite oxidase and related enzymes

Gene ontology:

Cell location: Periplasm. Note=Is attached to the inner membrane when interacting with the yedZ subunit (By similarity)

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the yedY family

Homologues:

Organism=Escherichia coli, GI1788282, Length=328, Percent_Identity=52.7439024390244, Blast_Score=344, Evalue=5e-96,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YEDY_AGRT5 (P58770)

Other databases:

- EMBL:   AE007869
- PIR:   AE2812
- PIR:   F97590
- RefSeq:   NP_354894.2
- ProteinModelPortal:   P58770
- SMR:   P58770
- STRING:   P58770
- GeneID:   1133957
- GenomeReviews:   AE007869_GR
- KEGG:   atu:Atu1919
- eggNOG:   COG2041
- HOGENOM:   HBG287041
- OMA:   HYNNFYE
- PhylomeDB:   P58770
- ProtClustDB:   PRK05363
- BioCyc:   ATUM176299-1:ATU1919-MONOMER
- HAMAP:   MF_01206
- InterPro:   IPR000572
- InterPro:   IPR006311
- InterPro:   IPR022867
- Gene3D:   G3DSA:3.90.420.10
- TIGRFAMs:   TIGR01409

Pfam domain/function: PF00174 Oxidored_molyb; SSF56524 Oxidored_molyb

EC number: NA

Molecular weight: Translated: 34992; Mature: 34861

Theoretical pI: Translated: 8.73; Mature: 8.73

Prosite motif: PS51318 TAT

Important sites: BINDING 71-71 BINDING 163-163 BINDING 213-213 BINDING 218-218

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPAYRPPHIASSEITPKSFYLSRRNFLGTAAGLAAIGLAGREAIAAPLSAKPGAYKLDEK
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCCCCEECCCC
LTPLDAVTSYNNFYEFGVGKSDPKENSGKFKPTPWTVKVDGLVSKPQEFGIEELMKYPLE
CCCHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCEEEEECCCCCCHHHCCHHHHHHCCHH
ERTYRMRCVEGWSMVIPWIGFPLSALLDKVEPLGSAKYVSFETVVRPEEMPGQSGLFQPL
HHHHHHHHHCCCEEEECHHCCCHHHHHHHHCCCCCCEEEEEEEEECCHHCCCCCCCCCCC
SWPYVEGLRLDEARHPLTILAVGLYGETLPNQNGAPIRLVVPWKYGFKGIKSIMRISLVE
CCCHHCCEECCCCCCCEEEEEEEHHCCCCCCCCCCCEEEEECCHHCHHHHHHHHHHHHHH
KQPETTWKNSNAREYGFYSNVNPHVDHPRWSQATEQRIGEGGFFGTQNRPTLMFNGYDDV
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCEEEECCCHHH
ASLYTGLDLKANY
HHHHHCCCEEECC
>Mature Secondary Structure 
PAYRPPHIASSEITPKSFYLSRRNFLGTAAGLAAIGLAGREAIAAPLSAKPGAYKLDEK
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCCCCEECCCC
LTPLDAVTSYNNFYEFGVGKSDPKENSGKFKPTPWTVKVDGLVSKPQEFGIEELMKYPLE
CCCHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCEEEEECCCCCCHHHCCHHHHHHCCHH
ERTYRMRCVEGWSMVIPWIGFPLSALLDKVEPLGSAKYVSFETVVRPEEMPGQSGLFQPL
HHHHHHHHHCCCEEEECHHCCCHHHHHHHHCCCCCCEEEEEEEEECCHHCCCCCCCCCCC
SWPYVEGLRLDEARHPLTILAVGLYGETLPNQNGAPIRLVVPWKYGFKGIKSIMRISLVE
CCCHHCCEECCCCCCCEEEEEEEHHCCCCCCCCCCCEEEEECCHHCHHHHHHHHHHHHHH
KQPETTWKNSNAREYGFYSNVNPHVDHPRWSQATEQRIGEGGFFGTQNRPTLMFNGYDDV
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCEEEECCCHHH
ASLYTGLDLKANY
HHHHHCCCEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Mo [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11743193; 11743194