Definition | Agrobacterium tumefaciens str. C58 chromosome circular, complete sequence. |
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Accession | NC_003062 |
Length | 2,841,580 |
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The map label for this gene is manA
Identifier: 159184799
GI number: 159184799
Start: 1513408
End: 1515891
Strand: Direct
Name: manA
Synonym: Atu1523
Alternate gene names: NA
Gene position: 1513408-1515891 (Clockwise)
Preceding gene: 159184797
Following gene: 159184800
Centisome position: 53.26
GC content: 59.38
Gene sequence:
>2484_bases ATGATTTCTTCCTCCACGCCCGAAACCGTCATCGATCTGGCCGGGCTCTGGCACTTGGCCTCAGTGGAAGGAGACCATGC CACCGAGATTTCCATTCCGGGCGATATTCACTCCGCGCTCAAAAATGCCGCCATCATTCCCGACCCCTATCACGGCGCCA ACGAGAAGGCCGTTCAATGGGTTGCACAGCAGGACTGGATCATCGAGAGGACCTTCATCCTCGATGATGCTGAGGCGAGC TGGTATCTCGATATCGATTATCTCGACACCGTCGCCATCGTCTTCGTCAACGACGTTCCGGTCCTAAGCGCCGACAATTG CTTCCGCCGTTACCGGCCCGATATTTCCCGTGCCGTGCGGCCGGGTGAAAACACCATCCGAATCCATTTCCATTCCAACA TCACGGCTGGCGCGGAGCGGCAGGCGCGGCAGCCCTTTTATATTCCCTATCACCCCGGCAATTCGCCGATCGCCAATGGC AACATGCTGCGCAAGCCGCAATGCCATTTCGGCTGGGACTGGAACATCGCGATTGCGCCGCTTGGCCTTTACGGCAAAAT CCTGCTGAAACGCCTCGATACCGCCCGCATCGAACACGTCGTCAGCTCGCAGCACCATGTCGAAGGCGGCGTCGAGCTGC ATGTGGCCGTCACGCTGTTTGCCGAGGGACCGGCGAGCCTGCCGGTCTATCTGTCGCTGGGCGACGAAAGGCTGCGGCTG GAGTGCGGCGTCGGCGCTGGCGAAACGGTGGTACGCCACGTCTTCTTCGTTGAAAATCCAGACCTCTGGTGGCCGGCCGG CAGTGGCGAGCAGACGCTCTACAAACTCACGGTGGAACTGCCGGATGAAACCGTCACCCGCCAGATCGGCTTTCGAACCA TCGAGCTTCTGACCGACAAGGATGAGGCTGGCAGCCGCTTCGCCTTCCGCATCAATGGCCGGGAAATCTTCTGCCGCGGC GCCAACTGGATTCCGGCCGACGCGCTCTATTCGCTGACCAGCCGCGAAAAGACCGAAGATCTCCTCTGCTCCGCGGTCGA GGCCAACATGAACATGATCCGCGTCTGGGGCGGCGGCTTTTATGAGGAAGACTGGTTCTACGATCTCTGCGACCGTCTTG GCCTGCTGGTCTGGCAGGACTTCATGTTCGCCTGCAATCTTTACCCCTGCAGCGAGGATTTTCTCGACAATGTCGAGCAT GAGGTCGACTATCAGGTGAAACGCCTCTCCTCGCATCCCTCCATCGCGCTCTGGTGCGGCGATAACGAACTGGTGGGTGC GCTGACCTGGTTCGACGAATCCCGCAACAATCGCGACCGCTATCTTGTTGCTTACGACCGGTTGAACCGCACCATCGAAA AAGCACTGAAAAAAGCCACTCCCGAAGCGCTCTGGTGGCCATCGAGCCCAGCCTCTGGTTATCTGGATTATGGCGATGCC TGGCACGCGGATGGTTCCGGCGACATGCATTACTGGTCCGTCTGGCACGAGAACAAGTCGTTCGACAATTACCATCAGGT GAAACCGCGTTTCTGCTCCGAATTCGGTTTCCAGTCCTATACGTCGATGCCCGTCATCCGCACCTATGCGGAGGACAAGG ACATGAACATCGCCTCCCCGGTCATCGAGCTGCACCAGAAGAATGTCGGCGGCAATGAACGCATTGCCGGCACCATGTTC CGCTATTTCCGCTTCCCCAGGGATTTCGAAAACTTCGTTTACCTCAGCCAGGTGCAGCAGGCGCTGGCGATCCGCACCGC CGTCGATTACTGGCGGTCGCTGAAACCCCATTGCATGGGCACGCTTTACTGGCAGCTGAACGACACCTGGCCGGTCGCCT CATGGTCGAGCCTCGATTATGGCGGCGGCTGGAAGGCACTGCACTATGCCGCCCGCCGTTTCTTCCAGCCGGTCGCGGTG TCGGCCATCCCTTCGGCAGATGGACGCCGGGTGACTTTCTCCATGGTCAACGACACGGCGGAGGATGTCGAGATCGACAT GAACATCGTCGCACTCGCCATGGACGGCAACCGTGTGCCGCTGAAATCCGCCAATGGGACTTGCACGAGCGACAAGGCTG CGACGCTGACCGATATCGACATGGACAGCCTGCCTGATGGCGCGATCCTCGCGTGGAACTTTATCGCCTCCAATGGCATG ACCGGCGAAGGTCATCATGTGCGCGACACCTACAAGGCGCTGGAGCTTCAGCCCGCCGGCCTGGAATTTTCCGTTGGCCC GCTGAAAAACGGCCAATTCGAAATCGATGTCACCGCCGCCGGTCTCGCGCTCTTCATCATGCTGGAGGCAGATCAGCCCG GACGGTACTCCGACAACCTTTTCGACCTTGCAGCGGGCGAAACGCGTCGCATCATCTTCACCCCGAAGGGGGCAGGCCCC CAGCCGCATTTCCGTATCTTCGATCTTCATACCTGCCAATCCTCGCCCAATCCCGGCATTGAAACCATGCGGAGAAAGGC ATAA
Upstream 100 bases:
>100_bases GCGGCCGCTTTGCGCCCATCCATTCTCCCCATATTCTGACACAAGCCTGCATCATAATGCCGGCCATCTCCGTTGAATTC ATATTATGCAGGGTCCGATC
Downstream 100 bases:
>100_bases CCATCCCTCTTGGGAATGACAGGGGCGCCCGCGCCTGTTTTCATCGATTCAAAGGGTTGCCGGGTTCTCCGGCAGCCAGT CATCAGCAAGTGGAGGAAGA
Product: beta-mannosidase precursor
Products: NA
Alternate protein names: Glycoside Hydrolase Family Protein; Beta-Mannosidase Protein; Glycoside Hydrolase; Mannosidase; Coagulation Factor 5/8 Type Domain Protein; Glycosyl Hydrolase; Glycoside Hydrolase Family 2 Protein; Glycosidase; O-Glycosyl Hydrolase; Glycoside Hydrolase Family 2 TIM Barrel; Beta-Galactosidase/Beta-Glucuronidase; Beta-Glucuronidase; Exported Glycosyl Hydrolase; Beta-Galactosidase/Beta- Glucuronidase Family Protein; Beta-Galactosidase; Beta-D-Mannosidase; Beta-Mannosidase Man2A; Exo-Beta-D-Glucosaminidase; DS Domain/Family 2 Glycosyl Hydrolase; Beta-Galactosidase/Beta; Exported Beta-Mannosidase-Like Glycosidase; Mannosylglycoprotein Endo-Beta-Mannosidase; Beta-Mannosidase-Related Protein; BETA-Mannosidase Protein
Number of amino acids: Translated: 827; Mature: 827
Protein sequence:
>827_residues MISSSTPETVIDLAGLWHLASVEGDHATEISIPGDIHSALKNAAIIPDPYHGANEKAVQWVAQQDWIIERTFILDDAEAS WYLDIDYLDTVAIVFVNDVPVLSADNCFRRYRPDISRAVRPGENTIRIHFHSNITAGAERQARQPFYIPYHPGNSPIANG NMLRKPQCHFGWDWNIAIAPLGLYGKILLKRLDTARIEHVVSSQHHVEGGVELHVAVTLFAEGPASLPVYLSLGDERLRL ECGVGAGETVVRHVFFVENPDLWWPAGSGEQTLYKLTVELPDETVTRQIGFRTIELLTDKDEAGSRFAFRINGREIFCRG ANWIPADALYSLTSREKTEDLLCSAVEANMNMIRVWGGGFYEEDWFYDLCDRLGLLVWQDFMFACNLYPCSEDFLDNVEH EVDYQVKRLSSHPSIALWCGDNELVGALTWFDESRNNRDRYLVAYDRLNRTIEKALKKATPEALWWPSSPASGYLDYGDA WHADGSGDMHYWSVWHENKSFDNYHQVKPRFCSEFGFQSYTSMPVIRTYAEDKDMNIASPVIELHQKNVGGNERIAGTMF RYFRFPRDFENFVYLSQVQQALAIRTAVDYWRSLKPHCMGTLYWQLNDTWPVASWSSLDYGGGWKALHYAARRFFQPVAV SAIPSADGRRVTFSMVNDTAEDVEIDMNIVALAMDGNRVPLKSANGTCTSDKAATLTDIDMDSLPDGAILAWNFIASNGM TGEGHHVRDTYKALELQPAGLEFSVGPLKNGQFEIDVTAAGLALFIMLEADQPGRYSDNLFDLAAGETRRIIFTPKGAGP QPHFRIFDLHTCQSSPNPGIETMRRKA
Sequences:
>Translated_827_residues MISSSTPETVIDLAGLWHLASVEGDHATEISIPGDIHSALKNAAIIPDPYHGANEKAVQWVAQQDWIIERTFILDDAEAS WYLDIDYLDTVAIVFVNDVPVLSADNCFRRYRPDISRAVRPGENTIRIHFHSNITAGAERQARQPFYIPYHPGNSPIANG NMLRKPQCHFGWDWNIAIAPLGLYGKILLKRLDTARIEHVVSSQHHVEGGVELHVAVTLFAEGPASLPVYLSLGDERLRL ECGVGAGETVVRHVFFVENPDLWWPAGSGEQTLYKLTVELPDETVTRQIGFRTIELLTDKDEAGSRFAFRINGREIFCRG ANWIPADALYSLTSREKTEDLLCSAVEANMNMIRVWGGGFYEEDWFYDLCDRLGLLVWQDFMFACNLYPCSEDFLDNVEH EVDYQVKRLSSHPSIALWCGDNELVGALTWFDESRNNRDRYLVAYDRLNRTIEKALKKATPEALWWPSSPASGYLDYGDA WHADGSGDMHYWSVWHENKSFDNYHQVKPRFCSEFGFQSYTSMPVIRTYAEDKDMNIASPVIELHQKNVGGNERIAGTMF RYFRFPRDFENFVYLSQVQQALAIRTAVDYWRSLKPHCMGTLYWQLNDTWPVASWSSLDYGGGWKALHYAARRFFQPVAV SAIPSADGRRVTFSMVNDTAEDVEIDMNIVALAMDGNRVPLKSANGTCTSDKAATLTDIDMDSLPDGAILAWNFIASNGM TGEGHHVRDTYKALELQPAGLEFSVGPLKNGQFEIDVTAAGLALFIMLEADQPGRYSDNLFDLAAGETRRIIFTPKGAGP QPHFRIFDLHTCQSSPNPGIETMRRKA >Mature_827_residues MISSSTPETVIDLAGLWHLASVEGDHATEISIPGDIHSALKNAAIIPDPYHGANEKAVQWVAQQDWIIERTFILDDAEAS WYLDIDYLDTVAIVFVNDVPVLSADNCFRRYRPDISRAVRPGENTIRIHFHSNITAGAERQARQPFYIPYHPGNSPIANG NMLRKPQCHFGWDWNIAIAPLGLYGKILLKRLDTARIEHVVSSQHHVEGGVELHVAVTLFAEGPASLPVYLSLGDERLRL ECGVGAGETVVRHVFFVENPDLWWPAGSGEQTLYKLTVELPDETVTRQIGFRTIELLTDKDEAGSRFAFRINGREIFCRG ANWIPADALYSLTSREKTEDLLCSAVEANMNMIRVWGGGFYEEDWFYDLCDRLGLLVWQDFMFACNLYPCSEDFLDNVEH EVDYQVKRLSSHPSIALWCGDNELVGALTWFDESRNNRDRYLVAYDRLNRTIEKALKKATPEALWWPSSPASGYLDYGDA WHADGSGDMHYWSVWHENKSFDNYHQVKPRFCSEFGFQSYTSMPVIRTYAEDKDMNIASPVIELHQKNVGGNERIAGTMF RYFRFPRDFENFVYLSQVQQALAIRTAVDYWRSLKPHCMGTLYWQLNDTWPVASWSSLDYGGGWKALHYAARRFFQPVAV SAIPSADGRRVTFSMVNDTAEDVEIDMNIVALAMDGNRVPLKSANGTCTSDKAATLTDIDMDSLPDGAILAWNFIASNGM TGEGHHVRDTYKALELQPAGLEFSVGPLKNGQFEIDVTAAGLALFIMLEADQPGRYSDNLFDLAAGETRRIIFTPKGAGP QPHFRIFDLHTCQSSPNPGIETMRRKA
Specific function: Unknown
COG id: COG3250
COG function: function code G; Beta-galactosidase/beta-glucuronidase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Homo sapiens, GI84798622, Length=853, Percent_Identity=29.7772567409144, Blast_Score=374, Evalue=1e-103, Organism=Caenorhabditis elegans, GI17550784, Length=712, Percent_Identity=30.1966292134831, Blast_Score=327, Evalue=1e-89, Organism=Drosophila melanogaster, GI24643838, Length=844, Percent_Identity=29.9763033175355, Blast_Score=302, Evalue=7e-82, Organism=Drosophila melanogaster, GI24643840, Length=742, Percent_Identity=31.1320754716981, Blast_Score=293, Evalue=3e-79,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: 3.2.1.25
Molecular weight: Translated: 93247; Mature: 93247
Theoretical pI: Translated: 5.01; Mature: 5.01
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MISSSTPETVIDLAGLWHLASVEGDHATEISIPGDIHSALKNAAIIPDPYHGANEKAVQW CCCCCCCHHHHHHHHHHEEEECCCCCCEEEECCHHHHHHHHCCCCCCCCCCCCCHHHHHH VAQQDWIIERTFILDDAEASWYLDIDYLDTVAIVFVNDVPVLSADNCFRRYRPDISRAVR HHHCCEEEEEEEEEECCCCEEEEEEEHHCEEEEEEEECCCEECCCHHHHHHCCCHHHHCC PGENTIRIHFHSNITAGAERQARQPFYIPYHPGNSPIANGNMLRKPQCHFGWDWNIAIAP CCCCEEEEEEECCCCCCCHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEE LGLYGKILLKRLDTARIEHVVSSQHHVEGGVELHVAVTLFAEGPASLPVYLSLGDERLRL CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEEEECCCCCCEEEEEECCCEEEE ECGVGAGETVVRHVFFVENPDLWWPAGSGEQTLYKLTVELPDETVTRQIGFRTIELLTDK EECCCCCHHHEEEEEEEECCCEECCCCCCCCEEEEEEEECCCHHHHHHCCCEEEEEEECC DEAGSRFAFRINGREIFCRGANWIPADALYSLTSREKTEDLLCSAVEANMNMIRVWGGGF CCCCCEEEEEECCEEEEEECCCCCCHHHHHHHHCCCHHHHHHHHHHHCCCCEEEEECCCC YEEDWFYDLCDRLGLLVWQDFMFACNLYPCSEDFLDNVEHEVDYQVKRLSSHPSIALWCG CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCHHHHHHHHHHHCCCCCEEEEEC DNELVGALTWFDESRNNRDRYLVAYDRLNRTIEKALKKATPEALWWPSSPASGYLDYGDA CCCEEEEEEEECCCCCCCCCEEEEHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCC WHADGSGDMHYWSVWHENKSFDNYHQVKPRFCSEFGFQSYTSMPVIRTYAEDKDMNIASP CCCCCCCCEEEEEEEECCCCCCCHHHCCHHHHHHCCCCCCCCCCEEEEECCCCCCCHHHH VIELHQKNVGGNERIAGTMFRYFRFPRDFENFVYLSQVQQALAIRTAVDYWRSLKPHCMG HHHHHHCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEE TLYWQLNDTWPVASWSSLDYGGGWKALHYAARRFFQPVAVSAIPSADGRRVTFSMVNDTA EEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCCEEEEEEECCCC EDVEIDMNIVALAMDGNRVPLKSANGTCTSDKAATLTDIDMDSLPDGAILAWNFIASNGM CCEEEEEEEEEEEECCCCCEECCCCCCCCCCCCCEEEECCCCCCCCCCEEEEEEEECCCC TGEGHHVRDTYKALELQPAGLEFSVGPLKNGQFEIDVTAAGLALFIMLEADQPGRYSDNL CCCCCCHHHHHHHHEECCCCCEEECCCCCCCEEEEEEEECCEEEEEEEECCCCCCCCCCE FDLAAGETRRIIFTPKGAGPQPHFRIFDLHTCQSSPNPGIETMRRKA EEECCCCCEEEEEECCCCCCCCCEEEEEEEECCCCCCCCHHHHHHCC >Mature Secondary Structure MISSSTPETVIDLAGLWHLASVEGDHATEISIPGDIHSALKNAAIIPDPYHGANEKAVQW CCCCCCCHHHHHHHHHHEEEECCCCCCEEEECCHHHHHHHHCCCCCCCCCCCCCHHHHHH VAQQDWIIERTFILDDAEASWYLDIDYLDTVAIVFVNDVPVLSADNCFRRYRPDISRAVR HHHCCEEEEEEEEEECCCCEEEEEEEHHCEEEEEEEECCCEECCCHHHHHHCCCHHHHCC PGENTIRIHFHSNITAGAERQARQPFYIPYHPGNSPIANGNMLRKPQCHFGWDWNIAIAP CCCCEEEEEEECCCCCCCHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEE LGLYGKILLKRLDTARIEHVVSSQHHVEGGVELHVAVTLFAEGPASLPVYLSLGDERLRL CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEEEECCCCCCEEEEEECCCEEEE ECGVGAGETVVRHVFFVENPDLWWPAGSGEQTLYKLTVELPDETVTRQIGFRTIELLTDK EECCCCCHHHEEEEEEEECCCEECCCCCCCCEEEEEEEECCCHHHHHHCCCEEEEEEECC DEAGSRFAFRINGREIFCRGANWIPADALYSLTSREKTEDLLCSAVEANMNMIRVWGGGF CCCCCEEEEEECCEEEEEECCCCCCHHHHHHHHCCCHHHHHHHHHHHCCCCEEEEECCCC YEEDWFYDLCDRLGLLVWQDFMFACNLYPCSEDFLDNVEHEVDYQVKRLSSHPSIALWCG CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCHHHHHHHHHHHCCCCCEEEEEC DNELVGALTWFDESRNNRDRYLVAYDRLNRTIEKALKKATPEALWWPSSPASGYLDYGDA CCCEEEEEEEECCCCCCCCCEEEEHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCC WHADGSGDMHYWSVWHENKSFDNYHQVKPRFCSEFGFQSYTSMPVIRTYAEDKDMNIASP CCCCCCCCEEEEEEEECCCCCCCHHHCCHHHHHHCCCCCCCCCCEEEEECCCCCCCHHHH VIELHQKNVGGNERIAGTMFRYFRFPRDFENFVYLSQVQQALAIRTAVDYWRSLKPHCMG HHHHHHCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEE TLYWQLNDTWPVASWSSLDYGGGWKALHYAARRFFQPVAVSAIPSADGRRVTFSMVNDTA EEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCCEEEEEEECCCC EDVEIDMNIVALAMDGNRVPLKSANGTCTSDKAATLTDIDMDSLPDGAILAWNFIASNGM CCEEEEEEEEEEEECCCCCEECCCCCCCCCCCCCEEEECCCCCCCCCCEEEEEEEECCCC TGEGHHVRDTYKALELQPAGLEFSVGPLKNGQFEIDVTAAGLALFIMLEADQPGRYSDNL CCCCCCHHHHHHHHEECCCCCEEECCCCCCCEEEEEEEECCEEEEEEEECCCCCCCCCCE FDLAAGETRRIIFTPKGAGPQPHFRIFDLHTCQSSPNPGIETMRRKA EEECCCCCEEEEEECCCCCCCCCEEEEEEEECCCCCCCCHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA