Definition | Agrobacterium tumefaciens str. C58 chromosome circular, complete sequence. |
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Accession | NC_003062 |
Length | 2,841,580 |
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The map label for this gene is metF
Identifier: 159184752
GI number: 159184752
Start: 1414370
End: 1415290
Strand: Reverse
Name: metF
Synonym: Atu1418
Alternate gene names: NA
Gene position: 1415290-1414370 (Counterclockwise)
Preceding gene: 15888748
Following gene: 159184751
Centisome position: 49.81
GC content: 57.11
Gene sequence:
>921_bases ATGGGTTGGTCGAGTTTTTGGGATAATTCCGGTGCCGACGGAGATGTTGTCAGATCTAGCAACATCCTGGCTGGCTGGTC GATCGAGGTCATGCCGCGCACTGCGGCAAAGATCGATGATTTCAGAAATATTCTGCCTGATGGCACGCGGGTTTACATCG CCCACATAGACGGAACGCCGATAGCCGACATGGTATCCACCGCAAAGCGCTTGCATGACGAAGGCTTTCCCGTGATGCCG CATCTGCCGGCGCGTGGCATCAGCGGCAAAAACGAGCTGGAGGACTGGCTGAAGCGTTACCAGGGCGAGGCCGGCGTGAC GCAGGCGCTGCTGCTGGGTGGCGGCCAGAAACAGCCCGCTGGCAGTTTTTCGAGCTCGATCGACATGATTGAGACGGGCC TCTTCGACAAGATGGGGTTTACCCACCTTCATCTGGCCGGCCATCCCGAGGGTAATCGCGACATAGACAGCGATGGCTCT TCAAGAGGTGTCGATCAGGCCTTGTTGTGGAAGCAGGATTTCGCCAGCCGCACCGACGCCCGGCTTGCCCTGACGACCCA ATTCGCCTTCGAAGCGAAGGTGGTTATCGAATGGGCAAAACGCATCGGGAATATGGGTGTGACAATTCCTGTTCACGTCG GTATTGCTGGTCCGACAAAACTGCAGACATTGATCAAATTCGCAATCGCCTGCGGCGTTGGGCCGTCTCTGAAGGTGCTG CAGAAGCGCGCGCTTGATCTTTCGAGGCTCTTCGTTCCTTACGAGCCGACCGATTTCATCGCCGAACTTATCGACCACAA GGCGGCAAATCCCGATAGTCTCATCGAGCATGTCCATATTTTTCCGCTCGGCGGCATCAAGCCCTCTGCCGAGTGGATGA AGAAACATGCCTCCACCGGGACGCTGGCCAATGTCGCCTGA
Upstream 100 bases:
>100_bases AAGATTAAATAATTCGTCAATATTCTTGGTTTTTCGCAAAATTTTGATTGAAGTAGCCGTTTCATGTATACATAATCAGG TCTCGCTAAGGGAGAAAGCG
Downstream 100 bases:
>100_bases GAAAGCTTATTCTCAGGCGATATTGCGAGATGGCTTGAGGACAGTGCCGTCAGGCCGTCGTGTCCGGTGCTTTCAGCCGC GTAGCGCGTTTTTCAAGAAA
Product: methylenetetrahydrofolate reductase
Products: NA
Alternate protein names: 5 10-Methylenetetrahydrofolate Reductase; Methylenetetrahydrofolate Reductase Family Protein; Metfprotein-Like; MetF-Like Protein; Metfprotein -Like Protein
Number of amino acids: Translated: 306; Mature: 305
Protein sequence:
>306_residues MGWSSFWDNSGADGDVVRSSNILAGWSIEVMPRTAAKIDDFRNILPDGTRVYIAHIDGTPIADMVSTAKRLHDEGFPVMP HLPARGISGKNELEDWLKRYQGEAGVTQALLLGGGQKQPAGSFSSSIDMIETGLFDKMGFTHLHLAGHPEGNRDIDSDGS SRGVDQALLWKQDFASRTDARLALTTQFAFEAKVVIEWAKRIGNMGVTIPVHVGIAGPTKLQTLIKFAIACGVGPSLKVL QKRALDLSRLFVPYEPTDFIAELIDHKAANPDSLIEHVHIFPLGGIKPSAEWMKKHASTGTLANVA
Sequences:
>Translated_306_residues MGWSSFWDNSGADGDVVRSSNILAGWSIEVMPRTAAKIDDFRNILPDGTRVYIAHIDGTPIADMVSTAKRLHDEGFPVMP HLPARGISGKNELEDWLKRYQGEAGVTQALLLGGGQKQPAGSFSSSIDMIETGLFDKMGFTHLHLAGHPEGNRDIDSDGS SRGVDQALLWKQDFASRTDARLALTTQFAFEAKVVIEWAKRIGNMGVTIPVHVGIAGPTKLQTLIKFAIACGVGPSLKVL QKRALDLSRLFVPYEPTDFIAELIDHKAANPDSLIEHVHIFPLGGIKPSAEWMKKHASTGTLANVA >Mature_305_residues GWSSFWDNSGADGDVVRSSNILAGWSIEVMPRTAAKIDDFRNILPDGTRVYIAHIDGTPIADMVSTAKRLHDEGFPVMPH LPARGISGKNELEDWLKRYQGEAGVTQALLLGGGQKQPAGSFSSSIDMIETGLFDKMGFTHLHLAGHPEGNRDIDSDGSS RGVDQALLWKQDFASRTDARLALTTQFAFEAKVVIEWAKRIGNMGVTIPVHVGIAGPTKLQTLIKFAIACGVGPSLKVLQ KRALDLSRLFVPYEPTDFIAELIDHKAANPDSLIEHVHIFPLGGIKPSAEWMKKHASTGTLANVA
Specific function: Unknown
COG id: COG0685
COG function: function code E; 5,10-methylenetetrahydrofolate reductase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 33201; Mature: 33070
Theoretical pI: Translated: 6.75; Mature: 6.75
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGWSSFWDNSGADGDVVRSSNILAGWSIEVMPRTAAKIDDFRNILPDGTRVYIAHIDGTP CCCCCCCCCCCCCCCEEECCCEEECCEEEECCCHHHHHHHHHHHCCCCCEEEEEEECCCC IADMVSTAKRLHDEGFPVMPHLPARGISGKNELEDWLKRYQGEAGVTQALLLGGGQKQPA HHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCC GSFSSSIDMIETGLFDKMGFTHLHLAGHPEGNRDIDSDGSSRGVDQALLWKQDFASRTDA CCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCC RLALTTQFAFEAKVVIEWAKRIGNMGVTIPVHVGIAGPTKLQTLIKFAIACGVGPSLKVL EEEEEEHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCHHHHH QKRALDLSRLFVPYEPTDFIAELIDHKAANPDSLIEHVHIFPLGGIKPSAEWMKKHASTG HHHHHHHHHEECCCCCHHHHHHHHHHCCCCHHHHHHEEEEEECCCCCCCHHHHHHHCCCC TLANVA CCCCCC >Mature Secondary Structure GWSSFWDNSGADGDVVRSSNILAGWSIEVMPRTAAKIDDFRNILPDGTRVYIAHIDGTP CCCCCCCCCCCCCCEEECCCEEECCEEEECCCHHHHHHHHHHHCCCCCEEEEEEECCCC IADMVSTAKRLHDEGFPVMPHLPARGISGKNELEDWLKRYQGEAGVTQALLLGGGQKQPA HHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCC GSFSSSIDMIETGLFDKMGFTHLHLAGHPEGNRDIDSDGSSRGVDQALLWKQDFASRTDA CCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCC RLALTTQFAFEAKVVIEWAKRIGNMGVTIPVHVGIAGPTKLQTLIKFAIACGVGPSLKVL EEEEEEHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCHHHHH QKRALDLSRLFVPYEPTDFIAELIDHKAANPDSLIEHVHIFPLGGIKPSAEWMKKHASTG HHHHHHHHHEECCCCCHHHHHHHHHHCCCCHHHHHHEEEEEECCCCCCCHHHHHHHCCCC TLANVA CCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA