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The map label for this gene is lcfB [H]

Identifier: 159184751

GI number: 159184751

Start: 1411543

End: 1413378

Strand: Reverse

Name: lcfB [H]

Synonym: Atu1416

Alternate gene names: 159184751

Gene position: 1413378-1411543 (Counterclockwise)

Preceding gene: 159184752

Following gene: 15888741

Centisome position: 49.74

GC content: 60.24

Gene sequence:

>1836_bases
ATGAGTGTGAAACTTTGGTCGCCAGATGTCGCATGGGAGAAGCGGCCGAACGGCGAGATCATGATCTGGCGGAACGATCC
GCTTGGCCCCTATCCGCAGAAATTGAATGAGCGTCTCCTTCACTGGTGTCGTTCGGCACCGGAGCGCACATGGATGGCCG
ACCGTCAGGGTCGCGAGCCATGGCGCCGGGTCAGCTACGCCGAGGCTCTCGACAAGATACGGCGTATCGGCCAGTTCCTT
CTCGATCATGACCTTTCGGTCGAGAGGCCGCTGCTGGTGCTTTCTGAAAATTCCATCGAGCATGCGTTGATGGTGCTTGC
GGCCCAGCATGTCGGTATCGCCTCGGCTGCCATCACGCCGGCCTATGCCACGTCGGCCGATCTCACCAAACTCGCCGACA
TCCGCGGGCAGATCACCCCGGGGATGGTTTTTGCCGAGGATGCGACGCCCTTTCGCCGGGCGCTCGGCGAGGTTTTCGAC
GACGGTACACCGCTGGTCGGCCTCCGCAACCTGCCGGAAGATCGTTCCAATACGTTTCATTTCGAAACCCTGCTTGAAAC
GGAGCCGACCGAAGCGGTTGATCGTGCTTTCGATGCGGTCGGGCCGGATACCGTCGCCAAATTCCTTTTCACGTCAGGCA
CGACTGGTTCGCCCAAAGCGGTCATCCAGACGCAACGCATGTTGTGCTCCAATCAGGAAATGATTGCCGATTGTTATGGC
TACTTTCGCGAGGAGCCGCCGGTCGTCGTTGATTGGGCGCCATGGAACCACACGGCCGCGGGGAACAAGGTGTTCAACCT
CGTCCTCTATAATGGCGGTACCTATTATATCGATCGCGGCAAGCCCAGCCCGGCGCAGATCGGCCAGACACTGGACAATC
TCCGGGACATATCGCCCACCTGGTATTTCAACGTTCCCGCTGGCCACGAAATGCTGGTCCAGGCAATGCGCAAGGACGAG
GCGCTGTGCCGCAGCTTTTTTCGCGACCTGAAGATGCTGATGTATGCCGGTGCCGGCATGGCGCAGCACACATGGGATGC
GCTGACGGAGCTTTCCATGGCAACGGTCGGCCATGCGGTTCTCATGGGTGCCGGCCTCGGCTCGACGGAGACGGCACCCT
TCTCGCTGTTCTGCACCGAACCGCAGGACAAGCCCGGCAATATCGGTATCCCGGCGCAGGGCGTGACGATGAAACTCGTG
CCCTTCGATGGCCGGTACGAATTACGGCTGAAAGGCCCGAACATCACGCCCGGTTACTGGCGTAATGGCGAATTGACGGC
GGCAGCCTTCGACGAGGAAGGGTTCTATCGAATCGGCGATACCGTCAAATTTGCCGTCGCGGACGATCCGCGCCGCGGCT
TTTATTTCGATGGCCGCATGGCGGAAAACTTCAAGCTGCAGACCGGCACCTGGGTGGCCGTCGGGCCTTTGCGCGCGCAA
TTAGTCAACATGTTCGCCGGGCTGATCCGTGATGCCGTCATAACGGGCGAAAACCGGGCCGAACTGGGCGCTCTCGTCGT
GCCATTCATACCGGCGCTACGTGAGCTTGTTCGCGGTTCGCAACATCTCTCCGATGCGGAGATCATCCGGCACCCGAGTG
TCAGGGCGCAGATTGTCGCGAAGCTTTCGGCGCATCAAAAACAGGCGAGCGGTTCCGCAAGCCGCGTCATGCGCATTCTC
GTGATGGAAGACGCGCTGCGCTTCGAGAAAGGCGAGGTTACGGACAAGGGATCGATCAACCAGCGCGCCGTGCTTCTGCA
TCGCAAGGAGCTCGTAGAGTCACTTTACGGCGACACGCCGCAGGTCATCACCGTTGGCAGAGAGGTAGCAGCATGA

Upstream 100 bases:

>100_bases
GCATTTTGTTTACAAGGATATTATTTTCTTGTAATCATTTTTTTGACAAAAGATTATTCGTACGGTTCGCGTAAATGACG
TCTGGGAGGAGGTCGTGACG

Downstream 100 bases:

>100_bases
ATATCGAAGGCGCAGGCGCACTCGTCACGGGTGCGGCATCCGGCCTCGGGGCGGCCGTGGCGCGAATGCTCGCGGCTCGC
GGCGCGGCGGTCACCATTTT

Product: feruloyl-CoA synthase

Products: NA

Alternate protein names: Long-chain acyl-CoA synthetase [H]

Number of amino acids: Translated: 611; Mature: 610

Protein sequence:

>611_residues
MSVKLWSPDVAWEKRPNGEIMIWRNDPLGPYPQKLNERLLHWCRSAPERTWMADRQGREPWRRVSYAEALDKIRRIGQFL
LDHDLSVERPLLVLSENSIEHALMVLAAQHVGIASAAITPAYATSADLTKLADIRGQITPGMVFAEDATPFRRALGEVFD
DGTPLVGLRNLPEDRSNTFHFETLLETEPTEAVDRAFDAVGPDTVAKFLFTSGTTGSPKAVIQTQRMLCSNQEMIADCYG
YFREEPPVVVDWAPWNHTAAGNKVFNLVLYNGGTYYIDRGKPSPAQIGQTLDNLRDISPTWYFNVPAGHEMLVQAMRKDE
ALCRSFFRDLKMLMYAGAGMAQHTWDALTELSMATVGHAVLMGAGLGSTETAPFSLFCTEPQDKPGNIGIPAQGVTMKLV
PFDGRYELRLKGPNITPGYWRNGELTAAAFDEEGFYRIGDTVKFAVADDPRRGFYFDGRMAENFKLQTGTWVAVGPLRAQ
LVNMFAGLIRDAVITGENRAELGALVVPFIPALRELVRGSQHLSDAEIIRHPSVRAQIVAKLSAHQKQASGSASRVMRIL
VMEDALRFEKGEVTDKGSINQRAVLLHRKELVESLYGDTPQVITVGREVAA

Sequences:

>Translated_611_residues
MSVKLWSPDVAWEKRPNGEIMIWRNDPLGPYPQKLNERLLHWCRSAPERTWMADRQGREPWRRVSYAEALDKIRRIGQFL
LDHDLSVERPLLVLSENSIEHALMVLAAQHVGIASAAITPAYATSADLTKLADIRGQITPGMVFAEDATPFRRALGEVFD
DGTPLVGLRNLPEDRSNTFHFETLLETEPTEAVDRAFDAVGPDTVAKFLFTSGTTGSPKAVIQTQRMLCSNQEMIADCYG
YFREEPPVVVDWAPWNHTAAGNKVFNLVLYNGGTYYIDRGKPSPAQIGQTLDNLRDISPTWYFNVPAGHEMLVQAMRKDE
ALCRSFFRDLKMLMYAGAGMAQHTWDALTELSMATVGHAVLMGAGLGSTETAPFSLFCTEPQDKPGNIGIPAQGVTMKLV
PFDGRYELRLKGPNITPGYWRNGELTAAAFDEEGFYRIGDTVKFAVADDPRRGFYFDGRMAENFKLQTGTWVAVGPLRAQ
LVNMFAGLIRDAVITGENRAELGALVVPFIPALRELVRGSQHLSDAEIIRHPSVRAQIVAKLSAHQKQASGSASRVMRIL
VMEDALRFEKGEVTDKGSINQRAVLLHRKELVESLYGDTPQVITVGREVAA
>Mature_610_residues
SVKLWSPDVAWEKRPNGEIMIWRNDPLGPYPQKLNERLLHWCRSAPERTWMADRQGREPWRRVSYAEALDKIRRIGQFLL
DHDLSVERPLLVLSENSIEHALMVLAAQHVGIASAAITPAYATSADLTKLADIRGQITPGMVFAEDATPFRRALGEVFDD
GTPLVGLRNLPEDRSNTFHFETLLETEPTEAVDRAFDAVGPDTVAKFLFTSGTTGSPKAVIQTQRMLCSNQEMIADCYGY
FREEPPVVVDWAPWNHTAAGNKVFNLVLYNGGTYYIDRGKPSPAQIGQTLDNLRDISPTWYFNVPAGHEMLVQAMRKDEA
LCRSFFRDLKMLMYAGAGMAQHTWDALTELSMATVGHAVLMGAGLGSTETAPFSLFCTEPQDKPGNIGIPAQGVTMKLVP
FDGRYELRLKGPNITPGYWRNGELTAAAFDEEGFYRIGDTVKFAVADDPRRGFYFDGRMAENFKLQTGTWVAVGPLRAQL
VNMFAGLIRDAVITGENRAELGALVVPFIPALRELVRGSQHLSDAEIIRHPSVRAQIVAKLSAHQKQASGSASRVMRILV
MEDALRFEKGEVTDKGSINQRAVLLHRKELVESLYGDTPQVITVGREVAA

Specific function: Involved in the degradation of long-chain fatty acids [H]

COG id: COG0318

COG function: function code IQ; Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II

Gene ontology:

Cell location: Partially Membrane-Associated [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ATP-dependent AMP-binding enzyme family [H]

Homologues:

Organism=Caenorhabditis elegans, GI17556552, Length=451, Percent_Identity=24.1685144124169, Blast_Score=84, Evalue=2e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020459
- InterPro:   IPR020845
- InterPro:   IPR000873 [H]

Pfam domain/function: PF00501 AMP-binding [H]

EC number: =6.2.1.3 [H]

Molecular weight: Translated: 67861; Mature: 67730

Theoretical pI: Translated: 6.34; Mature: 6.34

Prosite motif: PS00455 AMP_BINDING

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSVKLWSPDVAWEKRPNGEIMIWRNDPLGPYPQKLNERLLHWCRSAPERTWMADRQGREP
CCEEECCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCH
WRRVSYAEALDKIRRIGQFLLDHDLSVERPLLVLSENSIEHALMVLAAQHVGIASAAITP
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHHHHHHCCHHHHHCCC
AYATSADLTKLADIRGQITPGMVFAEDATPFRRALGEVFDDGTPLVGLRNLPEDRSNTFH
CCCCCHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHCCCCCEEECCCCCCCCCCCEE
FETLLETEPTEAVDRAFDAVGPDTVAKFLFTSGTTGSPKAVIQTQRMLCSNQEMIADCYG
EEEEECCCCHHHHHHHHHCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCHHHHHHHHH
YFREEPPVVVDWAPWNHTAAGNKVFNLVLYNGGTYYIDRGKPSPAQIGQTLDNLRDISPT
HHCCCCCEEEEECCCCCCCCCCEEEEEEEECCCEEEEECCCCCHHHHHHHHHHHHCCCCC
WYFNVPAGHEMLVQAMRKDEALCRSFFRDLKMLMYAGAGMAQHTWDALTELSMATVGHAV
EEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
LMGAGLGSTETAPFSLFCTEPQDKPGNIGIPAQGVTMKLVPFDGRYELRLKGPNITPGYW
HEECCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEECCCCCCCCC
RNGELTAAAFDEEGFYRIGDTVKFAVADDPRRGFYFDGRMAENFKLQTGTWVAVGPLRAQ
CCCCEEEEEECCCCCEEECCEEEEEEECCCCCCEEECCEECCCEEEECCCEEEECHHHHH
LVNMFAGLIRDAVITGENRAELGALVVPFIPALRELVRGSQHLSDAEIIRHPSVRAQIVA
HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCHHHHHHH
KLSAHQKQASGSASRVMRILVMEDALRFEKGEVTDKGSINQRAVLLHRKELVESLYGDTP
HHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCC
QVITVGREVAA
CEEECCHHHCC
>Mature Secondary Structure 
SVKLWSPDVAWEKRPNGEIMIWRNDPLGPYPQKLNERLLHWCRSAPERTWMADRQGREP
CEEECCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCH
WRRVSYAEALDKIRRIGQFLLDHDLSVERPLLVLSENSIEHALMVLAAQHVGIASAAITP
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHHHHHHCCHHHHHCCC
AYATSADLTKLADIRGQITPGMVFAEDATPFRRALGEVFDDGTPLVGLRNLPEDRSNTFH
CCCCCHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHCCCCCEEECCCCCCCCCCCEE
FETLLETEPTEAVDRAFDAVGPDTVAKFLFTSGTTGSPKAVIQTQRMLCSNQEMIADCYG
EEEEECCCCHHHHHHHHHCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCHHHHHHHHH
YFREEPPVVVDWAPWNHTAAGNKVFNLVLYNGGTYYIDRGKPSPAQIGQTLDNLRDISPT
HHCCCCCEEEEECCCCCCCCCCEEEEEEEECCCEEEEECCCCCHHHHHHHHHHHHCCCCC
WYFNVPAGHEMLVQAMRKDEALCRSFFRDLKMLMYAGAGMAQHTWDALTELSMATVGHAV
EEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
LMGAGLGSTETAPFSLFCTEPQDKPGNIGIPAQGVTMKLVPFDGRYELRLKGPNITPGYW
HEECCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEECCCCCCCCC
RNGELTAAAFDEEGFYRIGDTVKFAVADDPRRGFYFDGRMAENFKLQTGTWVAVGPLRAQ
CCCCEEEEEECCCCCEEECCEEEEEEECCCCCCEEECCEECCCEEEECCCEEEECHHHHH
LVNMFAGLIRDAVITGENRAELGALVVPFIPALRELVRGSQHLSDAEIIRHPSVRAQIVA
HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCHHHHHHH
KLSAHQKQASGSASRVMRILVMEDALRFEKGEVTDKGSINQRAVLLHRKELVESLYGDTP
HHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCC
QVITVGREVAA
CEEECCHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9579061; 9384377 [H]