Definition | Agrobacterium tumefaciens str. C58 chromosome circular, complete sequence. |
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Accession | NC_003062 |
Length | 2,841,580 |
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The map label for this gene is 159184697
Identifier: 159184697
GI number: 159184697
Start: 1283219
End: 1284457
Strand: Reverse
Name: 159184697
Synonym: Atu1293
Alternate gene names: NA
Gene position: 1284457-1283219 (Counterclockwise)
Preceding gene: 159184698
Following gene: 159184696
Centisome position: 45.2
GC content: 60.37
Gene sequence:
>1239_bases ATGTCCCTTCGCCTCCGTCTTCTGACCGGCATGCTGTCGGCCAGCATTCTTGCCTTTCCGGCACTTGCCGCCGACAGCCG GTCGCTGCAGATACTGGTGTCCAAAAGCGACCAGTCGCTCTCGCTTTATGAGAATGGTGAGATCATCGCTACCTCGAAAG TCTCCACCGGCAAGGCCGGGCACGAGACGCCGAGTGGCATCTTCTCCATTCTGGAAAAGCGGAAATACCACGAGTCGAAT ATCTATTCGGCCGCGCCCATGCCGTTCATGCAAAGGCTGACATGGTCCGGCATCGCGCTACACGAGGGCAAGGTGCCGAA TTATCCAGCCTCGCATGGCTGCGTGCGCCTGCCCTCGAAATTCGCGAAGTCACTTTTCGGAGACACGCGGGCCGGTGTGC ATGTCATCATCACCGATCGCCCGGTTTCCCTGCGTTTCGTAGAGCATCCAGCGCTGTTTGCGCCGCGCGACGATGCCGAT GACGGCAAGCTGCTTCTGTCGGATGTGGAGTTGCGCCCGGCGACCTTCGATGCAGCATTGGGTGCGGTCGAGGTTGCCGT CAATGAAAAAACGCAGGCCATCAAACCGGCGGCAAAGACCAAAGCCTCCTCGCCGCTGCGCATTCTCATTACGCGTCGTG GCGAGCGGGAAAAGGTAATGGATATCCAGGCCGCGCTGACACGCCTTGGCTTCGATGCCGGTTCTGCCGATGGTTATGCC GGCGAGATGACGGTGAACGCCATCAACGGGTTCAAGCGCTGGAAAGGGCTGAAAACCACCGGGCCGCTTCTGACCGACGC CTTTGTGACGGCGCTCTACGCCTCTGCCGATGAGGATCATCCGCCGAATGGCCAGATCATGGTGCGGCAGGACTTCAAGC CGCTGTTCGAAGCGGCCATCGATATCAAGGATCCGGAAGTGGCGCTCGGAACCCATTTCCTCGAAGCCGTTTCCGTAGAC CGCGCTGCCGGAACCGCCGAATGGAACGGCGTGACGCTCGAAAATCATCTGCCGGCCGCTGCCCGCAAGCGGCTTGGCAT TACCGTTACCGAAGCGCCCGGCGGCTTCGACCAGTTGAGCGGCGTGCTCAGCCGTCTCGAAATCCCAGCGGAGATACGCC ACCGGATCGAGCAGGAGCTTTCAAGCGGAAGCTCGATCACCGTTTCCGATATCAGTCACCAGATGGAGACAGGGACCGGG ACCGACTTCATCACGGTCACGAAAGAGGGCCCGGTGTGA
Upstream 100 bases:
>100_bases TTTACACAAATTAGTGATGTTGCCGTCGCCGCTTCCTTAAACTTCATTAAACTTCGCGTGGTTGAGTGAGGGAAGTTTTG TGCATGTGGTGTATTGCGTC
Downstream 100 bases:
>100_bases GGGCTTACGCCTTACACCAGTTCCACATCAACGACGCCGGGTGCGGACCGCAATGCGGCGGCGATTTCAGGTGAAATGCG GTATTTCTCCGTCAGTTCCA
Product: hypothetical protein
Products: NA
Alternate protein names: ErfK/YbiS/YcfS/YnhG; ErfK/YbiS/YcfS/YnhG Family; Protein ErfK Family
Number of amino acids: Translated: 412; Mature: 411
Protein sequence:
>412_residues MSLRLRLLTGMLSASILAFPALAADSRSLQILVSKSDQSLSLYENGEIIATSKVSTGKAGHETPSGIFSILEKRKYHESN IYSAAPMPFMQRLTWSGIALHEGKVPNYPASHGCVRLPSKFAKSLFGDTRAGVHVIITDRPVSLRFVEHPALFAPRDDAD DGKLLLSDVELRPATFDAALGAVEVAVNEKTQAIKPAAKTKASSPLRILITRRGEREKVMDIQAALTRLGFDAGSADGYA GEMTVNAINGFKRWKGLKTTGPLLTDAFVTALYASADEDHPPNGQIMVRQDFKPLFEAAIDIKDPEVALGTHFLEAVSVD RAAGTAEWNGVTLENHLPAAARKRLGITVTEAPGGFDQLSGVLSRLEIPAEIRHRIEQELSSGSSITVSDISHQMETGTG TDFITVTKEGPV
Sequences:
>Translated_412_residues MSLRLRLLTGMLSASILAFPALAADSRSLQILVSKSDQSLSLYENGEIIATSKVSTGKAGHETPSGIFSILEKRKYHESN IYSAAPMPFMQRLTWSGIALHEGKVPNYPASHGCVRLPSKFAKSLFGDTRAGVHVIITDRPVSLRFVEHPALFAPRDDAD DGKLLLSDVELRPATFDAALGAVEVAVNEKTQAIKPAAKTKASSPLRILITRRGEREKVMDIQAALTRLGFDAGSADGYA GEMTVNAINGFKRWKGLKTTGPLLTDAFVTALYASADEDHPPNGQIMVRQDFKPLFEAAIDIKDPEVALGTHFLEAVSVD RAAGTAEWNGVTLENHLPAAARKRLGITVTEAPGGFDQLSGVLSRLEIPAEIRHRIEQELSSGSSITVSDISHQMETGTG TDFITVTKEGPV >Mature_411_residues SLRLRLLTGMLSASILAFPALAADSRSLQILVSKSDQSLSLYENGEIIATSKVSTGKAGHETPSGIFSILEKRKYHESNI YSAAPMPFMQRLTWSGIALHEGKVPNYPASHGCVRLPSKFAKSLFGDTRAGVHVIITDRPVSLRFVEHPALFAPRDDADD GKLLLSDVELRPATFDAALGAVEVAVNEKTQAIKPAAKTKASSPLRILITRRGEREKVMDIQAALTRLGFDAGSADGYAG EMTVNAINGFKRWKGLKTTGPLLTDAFVTALYASADEDHPPNGQIMVRQDFKPLFEAAIDIKDPEVALGTHFLEAVSVDR AAGTAEWNGVTLENHLPAAARKRLGITVTEAPGGFDQLSGVLSRLEIPAEIRHRIEQELSSGSSITVSDISHQMETGTGT DFITVTKEGPV
Specific function: Unknown
COG id: COG3409
COG function: function code M; Putative peptidoglycan-binding domain-containing protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 44366; Mature: 44235
Theoretical pI: Translated: 6.75; Mature: 6.75
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSLRLRLLTGMLSASILAFPALAADSRSLQILVSKSDQSLSLYENGEIIATSKVSTGKAG CCEEHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCEEEEEECCCEEEECCCCCCCCC HETPSGIFSILEKRKYHESNIYSAAPMPFMQRLTWSGIALHEGKVPNYPASHGCVRLPSK CCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCEEEECCCCCCCCCCCCEEECHHH FAKSLFGDTRAGVHVIITDRPVSLRFVEHPALFAPRDDADDGKLLLSDVELRPATFDAAL HHHHHHCCCCCCEEEEEECCCEEEEEECCCCEECCCCCCCCCCEEEEECCCCCCHHHHHH GAVEVAVNEKTQAIKPAAKTKASSPLRILITRRGEREKVMDIQAALTRLGFDAGSADGYA CEEEEEECCCHHHHCCHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCC GEMTVNAINGFKRWKGLKTTGPLLTDAFVTALYASADEDHPPNGQIMVRQDFKPLFEAAI CEEEEEHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCCHHHHHHHC DIKDPEVALGTHFLEAVSVDRAAGTAEWNGVTLENHLPAAARKRLGITVTEAPGGFDQLS CCCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCCHHHHHHCCEEEEECCCCHHHHH GVLSRLEIPAEIRHRIEQELSSGSSITVSDISHQMETGTGTDFITVTKEGPV HHHHHCCCCHHHHHHHHHHHHCCCEEEEHHHHHHHCCCCCCEEEEEECCCCC >Mature Secondary Structure SLRLRLLTGMLSASILAFPALAADSRSLQILVSKSDQSLSLYENGEIIATSKVSTGKAG CEEHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCEEEEEECCCEEEECCCCCCCCC HETPSGIFSILEKRKYHESNIYSAAPMPFMQRLTWSGIALHEGKVPNYPASHGCVRLPSK CCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCEEEECCCCCCCCCCCCEEECHHH FAKSLFGDTRAGVHVIITDRPVSLRFVEHPALFAPRDDADDGKLLLSDVELRPATFDAAL HHHHHHCCCCCCEEEEEECCCEEEEEECCCCEECCCCCCCCCCEEEEECCCCCCHHHHHH GAVEVAVNEKTQAIKPAAKTKASSPLRILITRRGEREKVMDIQAALTRLGFDAGSADGYA CEEEEEECCCHHHHCCHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCC GEMTVNAINGFKRWKGLKTTGPLLTDAFVTALYASADEDHPPNGQIMVRQDFKPLFEAAI CEEEEEHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCCHHHHHHHC DIKDPEVALGTHFLEAVSVDRAAGTAEWNGVTLENHLPAAARKRLGITVTEAPGGFDQLS CCCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCCHHHHHHCCEEEEECCCCHHHHH GVLSRLEIPAEIRHRIEQELSSGSSITVSDISHQMETGTGTDFITVTKEGPV HHHHHCCCCHHHHHHHHHHHHCCCEEEEHHHHHHHCCCCCCEEEEEECCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA