Click here to switch to the map view.

The map label for this gene is exoD [H]

Identifier: 159184674

GI number: 159184674

Start: 1217651

End: 1218295

Strand: Reverse

Name: exoD [H]

Synonym: Atu1226

Alternate gene names: 159184674

Gene position: 1218295-1217651 (Counterclockwise)

Preceding gene: 15888564

Following gene: 15888554

Centisome position: 42.87

GC content: 56.9

Gene sequence:

>645_bases
ATGACGAACGAATTCGCATTCACTGACACGTCTGAAAAGCTCAGCACGACGCTTGAAAAGCTGATAGCAAAACTGCAGGG
CCAGACGATCACGTTGCGCGAGTTGATGGAAGCGATCGGCGAACAGGGCCTTTTGCTTATCTGCGCGATCGCGTCGCTGC
CATTTCTCATTCCGGTTTCCATTCCGGGCGTCAGCACGGTCTTTGGTGCGGCAATCATCCTTGTCAGCCTGGCAATCACG
CTGAACCGCCTGCCATGGCTGCCGGCAAAAATTCTCGACCGCCAGATGGAAACAGCAAAGCTTGTTCCGGCGTTGCAGAA
AGGCGTCGCAATCGTCTCCAAGCTCGATGGTTATATCCGCCCGCGCATTCCAGCCCTGACGACGGGCGTCGTCACAAACC
GGATAAACGGGCTCGCGCTGATGACGGCGGGCGTGCTGTTGATGATGCCGCTTGGCTTTATTCCCTTTTCCAACACATTG
CCGGGTGTCGCGATCCTGCTTTTGTCCGCCGGGATGATCCAGAGGGATGGCGTCACCGTGCTCGGCGGTTATCTGTTTCT
TGGACTGACGGCGATTTATTTTACCGCGCTGGCCTATGCCGCCTTCTGGGCCGGACAGGGCATCAGCAGCTCTATCGGCA
GCTAA

Upstream 100 bases:

>100_bases
TCACTCGACCAAATGTGAAGGCTGCGTTTCTATCGGTGATAGGCATCGGGCCGGATGAATGTTATCAACCCCGGAGGTAA
AACAACTCCCGGGAAGTCGC

Downstream 100 bases:

>100_bases
GCCCTTCAGCGGTCCCTGTTGCGGGTCTCGCGGTTCTGCCGCGATGCCCACCACACCGTCAGCCGCCGCCGCCTGCGGCG
CACCGCCGGCAGATCATGGG

Product: exoD protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 214; Mature: 213

Protein sequence:

>214_residues
MTNEFAFTDTSEKLSTTLEKLIAKLQGQTITLRELMEAIGEQGLLLICAIASLPFLIPVSIPGVSTVFGAAIILVSLAIT
LNRLPWLPAKILDRQMETAKLVPALQKGVAIVSKLDGYIRPRIPALTTGVVTNRINGLALMTAGVLLMMPLGFIPFSNTL
PGVAILLLSAGMIQRDGVTVLGGYLFLGLTAIYFTALAYAAFWAGQGISSSIGS

Sequences:

>Translated_214_residues
MTNEFAFTDTSEKLSTTLEKLIAKLQGQTITLRELMEAIGEQGLLLICAIASLPFLIPVSIPGVSTVFGAAIILVSLAIT
LNRLPWLPAKILDRQMETAKLVPALQKGVAIVSKLDGYIRPRIPALTTGVVTNRINGLALMTAGVLLMMPLGFIPFSNTL
PGVAILLLSAGMIQRDGVTVLGGYLFLGLTAIYFTALAYAAFWAGQGISSSIGS
>Mature_213_residues
TNEFAFTDTSEKLSTTLEKLIAKLQGQTITLRELMEAIGEQGLLLICAIASLPFLIPVSIPGVSTVFGAAIILVSLAITL
NRLPWLPAKILDRQMETAKLVPALQKGVAIVSKLDGYIRPRIPALTTGVVTNRINGLALMTAGVLLMMPLGFIPFSNTLP
GVAILLLSAGMIQRDGVTVLGGYLFLGLTAIYFTALAYAAFWAGQGISSSIGS

Specific function: Required for nodule invasion. Mutations in this gene lead to sensitivity to alkaline conditions which prevents nodule invasion [H]

COG id: COG3932

COG function: function code R; Uncharacterized ABC-type transport system, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: To Synechocystis PCC 6803 slr1875 [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010331 [H]

Pfam domain/function: PF06055 ExoD [H]

EC number: NA

Molecular weight: Translated: 22633; Mature: 22502

Theoretical pI: Translated: 9.52; Mature: 9.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTNEFAFTDTSEKLSTTLEKLIAKLQGQTITLRELMEAIGEQGLLLICAIASLPFLIPVS
CCCCCCCCCCHHHHHHHHHHHHHHHCCCEEHHHHHHHHHCCCCHHHHHHHHHCCEEEEEC
IPGVSTVFGAAIILVSLAITLNRLPWLPAKILDRQMETAKLVPALQKGVAIVSKLDGYIR
CCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHC
PRIPALTTGVVTNRINGLALMTAGVLLMMPLGFIPFSNTLPGVAILLLSAGMIQRDGVTV
CCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCCHHH
LGGYLFLGLTAIYFTALAYAAFWAGQGISSSIGS
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure 
TNEFAFTDTSEKLSTTLEKLIAKLQGQTITLRELMEAIGEQGLLLICAIASLPFLIPVS
CCCCCCCCCHHHHHHHHHHHHHHHCCCEEHHHHHHHHHCCCCHHHHHHHHHCCEEEEEC
IPGVSTVFGAAIILVSLAITLNRLPWLPAKILDRQMETAKLVPALQKGVAIVSKLDGYIR
CCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHC
PRIPALTTGVVTNRINGLALMTAGVLLMMPLGFIPFSNTLPGVAILLLSAGMIQRDGVTV
CCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCCHHH
LGGYLFLGLTAIYFTALAYAAFWAGQGISSSIGS
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1748284; 11481430 [H]