Definition | Agrobacterium tumefaciens str. C58 chromosome circular, complete sequence. |
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Accession | NC_003062 |
Length | 2,841,580 |
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The map label for this gene is 159184669
Identifier: 159184669
GI number: 159184669
Start: 1207901
End: 1208545
Strand: Direct
Name: 159184669
Synonym: Atu1214
Alternate gene names: NA
Gene position: 1207901-1208545 (Clockwise)
Preceding gene: 159184668
Following gene: 15888555
Centisome position: 42.51
GC content: 59.84
Gene sequence:
>645_bases ATGCCGAAGGTCGTCGTTCGCAATTTCGCCATTTCGCTTGACGGATATGGCGCAGGACCGGACCAGAGCCTGCAGAACCC CTTGGGCGTTAAGGGCGAAGAGCTGCATCAATGGGCCTTCAAGACACGCACCTTCCACCGCATGTTCGGCAAGGAGGGTG GCTCGACCGGGACGGACGAGAATTTTTCCGAAAAGAGCTTCGAGAATATCGGCGCCTGGGTCCTAGGCCGTAACATGTTC GGTCCCGTGCGTGGTGCATGGCCGGATGAAAGCTGGAAGGGCTGGTGGGGCGAGGAGCCGCCTTATCATGTCCCGGTCTT CGTCCTGACCCACCATGCGCGCCCTTCCTTCACCATGAAGGGCGGCACCGAATTCCATTTCGTCACCGATGGCATCGAGG CAGCGCTCGATCGGGCGCTAACAGCTGCGAATGGCAAGGATGTCCGCATCGGCGGCGGCGTCTCGACCATCCGGCAATAT ATGGCGGCGGGCATGATCGATGAGTTGCATCTGGCGCTTGCACCGGTGTTTCTCGGCAAGGGAGAGCAGCTTTTCGAAGG GCTGGATTTGCCAGCACTTGGTTATCGCTGCACGGGAACGGTGGCGGGCGAGGGCGCAACGCATCTGATTATCGAGAAGG TTTGA
Upstream 100 bases:
>100_bases GGCCGGCGGGCAGATCCCCACGGCCGTCAATCTGGAACGCGAAATCTGAGGCTGGTTGCCGAACGCTGGTGAGCTGGCCT CCCTGATGGAGGAGAATGCC
Downstream 100 bases:
>100_bases TTGCTGCTCATAGGCTTTACGTGCTGAGGTTTCCCTCCACCCTCATTCCTGTGCTTGTCACAGGAATCCAGCGGACGCGC GTCTGCGCGACGAGAGAGTC
Product: DNA-binding protein
Products: NA
Alternate protein names: Deaminase-Reductase Domain-Containing Protein; Bifunctional Deaminase-Reductase Domain-Containing Protein; Riboflavin Biosynthesis Protein RibD; Bifunctional Deaminase-Reductase-Like; Dihydrofolate Reductase; Bifunctional Deaminase-Reductase-Like Protein; Riboflavin Biosynthesis Protein; Deaminase-Reductase; Dihydrofolate Reductase Protein; Bifunctional Deaminase-Reductase C-Terminal Protein; Deaminase/Reductase; RibD Domain-Containing Protein; 5-Amino-6-(5-Phosphoribosylamino)Uracil Reductase; Riboflavin Biosynthesis Protein RibD Domain Protein; Bifunctional Deaminase-Reductase C-Terminal
Number of amino acids: Translated: 214; Mature: 213
Protein sequence:
>214_residues MPKVVVRNFAISLDGYGAGPDQSLQNPLGVKGEELHQWAFKTRTFHRMFGKEGGSTGTDENFSEKSFENIGAWVLGRNMF GPVRGAWPDESWKGWWGEEPPYHVPVFVLTHHARPSFTMKGGTEFHFVTDGIEAALDRALTAANGKDVRIGGGVSTIRQY MAAGMIDELHLALAPVFLGKGEQLFEGLDLPALGYRCTGTVAGEGATHLIIEKV
Sequences:
>Translated_214_residues MPKVVVRNFAISLDGYGAGPDQSLQNPLGVKGEELHQWAFKTRTFHRMFGKEGGSTGTDENFSEKSFENIGAWVLGRNMF GPVRGAWPDESWKGWWGEEPPYHVPVFVLTHHARPSFTMKGGTEFHFVTDGIEAALDRALTAANGKDVRIGGGVSTIRQY MAAGMIDELHLALAPVFLGKGEQLFEGLDLPALGYRCTGTVAGEGATHLIIEKV >Mature_213_residues PKVVVRNFAISLDGYGAGPDQSLQNPLGVKGEELHQWAFKTRTFHRMFGKEGGSTGTDENFSEKSFENIGAWVLGRNMFG PVRGAWPDESWKGWWGEEPPYHVPVFVLTHHARPSFTMKGGTEFHFVTDGIEAALDRALTAANGKDVRIGGGVSTIRQYM AAGMIDELHLALAPVFLGKGEQLFEGLDLPALGYRCTGTVAGEGATHLIIEKV
Specific function: Unknown
COG id: COG0262
COG function: function code H; Dihydrofolate reductase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 23346; Mature: 23215
Theoretical pI: Translated: 6.31; Mature: 6.31
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPKVVVRNFAISLDGYGAGPDQSLQNPLGVKGEELHQWAFKTRTFHRMFGKEGGSTGTDE CCCEEEEEEEEEECCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCC NFSEKSFENIGAWVLGRNMFGPVRGAWPDESWKGWWGEEPPYHVPVFVLTHHARPSFTMK CCCHHHHHHHCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCEEEC GGTEFHFVTDGIEAALDRALTAANGKDVRIGGGVSTIRQYMAAGMIDELHLALAPVFLGK CCCEEEEECCHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHCCHHHHHHHHHHHHHCC GEQLFEGLDLPALGYRCTGTVAGEGATHLIIEKV CHHHHHCCCCCCCCEEEEEEECCCCCEEEEEECC >Mature Secondary Structure PKVVVRNFAISLDGYGAGPDQSLQNPLGVKGEELHQWAFKTRTFHRMFGKEGGSTGTDE CCEEEEEEEEEECCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCC NFSEKSFENIGAWVLGRNMFGPVRGAWPDESWKGWWGEEPPYHVPVFVLTHHARPSFTMK CCCHHHHHHHCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCEEEC GGTEFHFVTDGIEAALDRALTAANGKDVRIGGGVSTIRQYMAAGMIDELHLALAPVFLGK CCCEEEEECCHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHCCHHHHHHHHHHHHHCC GEQLFEGLDLPALGYRCTGTVAGEGATHLIIEKV CHHHHHCCCCCCCCEEEEEEECCCCCEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA