Definition | Agrobacterium tumefaciens str. C58 chromosome circular, complete sequence. |
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Accession | NC_003062 |
Length | 2,841,580 |
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The map label for this gene is 159184624
Identifier: 159184624
GI number: 159184624
Start: 1113937
End: 1114449
Strand: Reverse
Name: 159184624
Synonym: Atu1123
Alternate gene names: NA
Gene position: 1114449-1113937 (Counterclockwise)
Preceding gene: 17935031
Following gene: 159184622
Centisome position: 39.22
GC content: 61.6
Gene sequence:
>513_bases ATGAGAATTGCCCTGCCCCTGCTGCTGGCGATTGCGGCGATGCTTTCGCTTTCCGGTTGCCAGCGCGATGAACCCCGCGA AGTGGCAAAGCTTTCCGGACGCATGTTCGTCTTCAATTACCGCGTCGCCGTCGCCACCTATCTGGTGACGCTTCAGCGTA CTGCCCCCATCCGCGATGGCAGCAGCGTGGAAGCGGCATTCGAAAACCCGCGCGGAGGGCCTGACCTCGTCGCCCGGGAA AGGATTTTTCCGAAGGACGAAAAGATCACCGTTCAAAGCCCGCCGGTCGAATGCGTGAAACAGGACCGGCCCTACAGGGT CAGCGTCCAGATCAAAGGGCCGGATGGCGATACTCTGCAGACGATAGAGACCACCATCCGCTCCGATACCGACCAGTCGG CTCTCCCCGCCAAGCCGCTGGTCGTCGGCCCGCTCTATACGCCCAATCCGGAGGTGTTTAAACCTGACGGTTCGACGGAT ATGCGACCGGTTCAGGGGTGCCCGGCGTCGTAG
Upstream 100 bases:
>100_bases ACCGCAGCAAGAACAGAAGCCGCATCTGGTGTGACATGGCGGTGTGCGGCAACCGGCAAAAAGCCAGCCGGCATTATCAC CGCAGGAAGGAGGCGCAGCC
Downstream 100 bases:
>100_bases AGAGCGGTGTGACCTTCCCGCCTGTCAAAAAAAACGGAGCCTTTCGCCCCCGTTTCCTTGAGTCTTTTCAGCAGCTTCAC CCAATCGCCTGAGAAGGCGA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 170; Mature: 170
Protein sequence:
>170_residues MRIALPLLLAIAAMLSLSGCQRDEPREVAKLSGRMFVFNYRVAVATYLVTLQRTAPIRDGSSVEAAFENPRGGPDLVARE RIFPKDEKITVQSPPVECVKQDRPYRVSVQIKGPDGDTLQTIETTIRSDTDQSALPAKPLVVGPLYTPNPEVFKPDGSTD MRPVQGCPAS
Sequences:
>Translated_170_residues MRIALPLLLAIAAMLSLSGCQRDEPREVAKLSGRMFVFNYRVAVATYLVTLQRTAPIRDGSSVEAAFENPRGGPDLVARE RIFPKDEKITVQSPPVECVKQDRPYRVSVQIKGPDGDTLQTIETTIRSDTDQSALPAKPLVVGPLYTPNPEVFKPDGSTD MRPVQGCPAS >Mature_170_residues MRIALPLLLAIAAMLSLSGCQRDEPREVAKLSGRMFVFNYRVAVATYLVTLQRTAPIRDGSSVEAAFENPRGGPDLVARE RIFPKDEKITVQSPPVECVKQDRPYRVSVQIKGPDGDTLQTIETTIRSDTDQSALPAKPLVVGPLYTPNPEVFKPDGSTD MRPVQGCPAS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 18580; Mature: 18580
Theoretical pI: Translated: 8.02; Mature: 8.02
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRIALPLLLAIAAMLSLSGCQRDEPREVAKLSGRMFVFNYRVAVATYLVTLQRTAPIRDG CCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCEEEEEHHHHHHHHHHHHHCCCCCCCC SSVEAAFENPRGGPDLVARERIFPKDEKITVQSPPVECVKQDRPYRVSVQIKGPDGDTLQ CCCEECCCCCCCCCCCHHHCCCCCCCCEEEEECCCHHHHHCCCCEEEEEEEECCCCCHHH TIETTIRSDTDQSALPAKPLVVGPLYTPNPEVFKPDGSTDMRPVQGCPAS HHHHHHHCCCCCCCCCCCCEEECCCCCCCCCEECCCCCCCCCCCCCCCCC >Mature Secondary Structure MRIALPLLLAIAAMLSLSGCQRDEPREVAKLSGRMFVFNYRVAVATYLVTLQRTAPIRDG CCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCEEEEEHHHHHHHHHHHHHCCCCCCCC SSVEAAFENPRGGPDLVARERIFPKDEKITVQSPPVECVKQDRPYRVSVQIKGPDGDTLQ CCCEECCCCCCCCCCCHHHCCCCCCCCEEEEECCCHHHHHCCCCEEEEEEEECCCCCHHH TIETTIRSDTDQSALPAKPLVVGPLYTPNPEVFKPDGSTDMRPVQGCPAS HHHHHHHCCCCCCCCCCCCEEECCCCCCCCCEECCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA