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The map label for this gene is ycaN [H]

Identifier: 159184501

GI number: 159184501

Start: 855732

End: 856496

Strand: Reverse

Name: ycaN [H]

Synonym: Atu0856

Alternate gene names: 159184501

Gene position: 856496-855732 (Counterclockwise)

Preceding gene: 15888201

Following gene: 15888193

Centisome position: 30.14

GC content: 60.39

Gene sequence:

>765_bases
ATGGGCATAGCGCTGGTGCGGCGAACGACACGCAGCGTCAGTCTGACGGAAGCGGGACAGCAGCTTTATGCGGATGTTTC
GCCGTCAATCGGCGCGATCTCGCAGGCGGCACAGGCCGCGTCGTCCCTGAGCGGCACGGTGCGGGGGCAGCTTCGGCTCG
CCGTTTCCTCCATTGCGGAGCGCTTTCTCTCGGGACCGCTGCTTGCGAGTTTTGCCGACGCCCATCCCGACGTACAGCTC
GACATCGTCGTGACGGACGAAGAATTCGATATTGTCGCCGAACAGTACGATGCCGGCGTGCGCCTTGGAGAGCTTATCGA
ACAGGATATGATCGCCGTTCCGGTATCGGTGCCGCAGCGACAGCTGGCCGTCTGTTCCGCTGAATATCGCGACCGTTTCG
GCCTGCCGACGCAGCCGCGCGAATTGATCGATCACAGATGCATTGGCTGGCGGGCGCGTCCGGGTGTAGCGCCTTATCGG
TGGGAATTTGCCGAGAACGGTCGCGAATTTGCGGTGGCGGTGCAGCCGGACTTCACCACCAACGACATGCAACTGATGAT
AAAGCTGGCATGCGCCGGTGCTGGCATCACCTTCGGCATGGAAGAGACGTTCCGTCCCCATCTGGAAAGCGGGAAGCTCA
TTGCGATGCTGGAAGACTATTCGCCTGTTTTTGCTGGGTTTTATCTCTATTATCCCAGCCGCCGCCACATTGCGCCGAAG
CTGCGCGCCTTCATCGATCATGTCAGGCTATCGAGAGAGCGGTAA

Upstream 100 bases:

>100_bases
CTGCCTGGTGGCCGAGGAACGAAACTTCCGGGCGGTGGCGGACAGGCTCGGCGTGACCCGATCCGCTGTCAGCCAGACCA
TGCGCAAGCTCGAGGAGACC

Downstream 100 bases:

>100_bases
TCTGCCGGAGCGGACCCCCGGCAGATCGTTTTCGAGAAGAAGCAAGATTATTTCTTCTGCGAGACCAGCGAGAAATAGGC
GCCCTGCGGATCGACGCAGT

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 254; Mature: 253

Protein sequence:

>254_residues
MGIALVRRTTRSVSLTEAGQQLYADVSPSIGAISQAAQAASSLSGTVRGQLRLAVSSIAERFLSGPLLASFADAHPDVQL
DIVVTDEEFDIVAEQYDAGVRLGELIEQDMIAVPVSVPQRQLAVCSAEYRDRFGLPTQPRELIDHRCIGWRARPGVAPYR
WEFAENGREFAVAVQPDFTTNDMQLMIKLACAGAGITFGMEETFRPHLESGKLIAMLEDYSPVFAGFYLYYPSRRHIAPK
LRAFIDHVRLSRER

Sequences:

>Translated_254_residues
MGIALVRRTTRSVSLTEAGQQLYADVSPSIGAISQAAQAASSLSGTVRGQLRLAVSSIAERFLSGPLLASFADAHPDVQL
DIVVTDEEFDIVAEQYDAGVRLGELIEQDMIAVPVSVPQRQLAVCSAEYRDRFGLPTQPRELIDHRCIGWRARPGVAPYR
WEFAENGREFAVAVQPDFTTNDMQLMIKLACAGAGITFGMEETFRPHLESGKLIAMLEDYSPVFAGFYLYYPSRRHIAPK
LRAFIDHVRLSRER
>Mature_253_residues
GIALVRRTTRSVSLTEAGQQLYADVSPSIGAISQAAQAASSLSGTVRGQLRLAVSSIAERFLSGPLLASFADAHPDVQLD
IVVTDEEFDIVAEQYDAGVRLGELIEQDMIAVPVSVPQRQLAVCSAEYRDRFGLPTQPRELIDHRCIGWRARPGVAPYRW
EFAENGREFAVAVQPDFTTNDMQLMIKLACAGAGITFGMEETFRPHLESGKLIAMLEDYSPVFAGFYLYYPSRRHIAPKL
RAFIDHVRLSRER

Specific function: Unknown

COG id: COG0583

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787128, Length=249, Percent_Identity=34.9397590361446, Blast_Score=172, Evalue=3e-44,
Organism=Escherichia coli, GI1787589, Length=249, Percent_Identity=31.3253012048193, Blast_Score=141, Evalue=4e-35,
Organism=Escherichia coli, GI1786401, Length=255, Percent_Identity=26.6666666666667, Blast_Score=95, Evalue=6e-21,
Organism=Escherichia coli, GI145693193, Length=247, Percent_Identity=27.9352226720648, Blast_Score=93, Evalue=2e-20,
Organism=Escherichia coli, GI1789440, Length=247, Percent_Identity=24.6963562753036, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI1789639, Length=253, Percent_Identity=25.6916996047431, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI87081978, Length=251, Percent_Identity=25.8964143426295, Blast_Score=68, Evalue=7e-13,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 28145; Mature: 28014

Theoretical pI: Translated: 5.68; Mature: 5.68

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGIALVRRTTRSVSLTEAGQQLYADVSPSIGAISQAAQAASSLSGTVRGQLRLAVSSIAE
CCEEEEECCCCCEEHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
RFLSGPLLASFADAHPDVQLDIVVTDEEFDIVAEQYDAGVRLGELIEQDMIAVPVSVPQR
HHHCCCHHHHHHCCCCCEEEEEEEECCCHHHHHHHHCCCCHHHHHHHHHHEEECCCCCHH
QLAVCSAEYRDRFGLPTQPRELIDHRCIGWRARPGVAPYRWEFAENGREFAVAVQPDFTT
HHHHHHHHHHHCCCCCCCHHHHHHHHCCCEECCCCCCCEEEECCCCCCEEEEEECCCCCC
NDMQLMIKLACAGAGITFGMEETFRPHLESGKLIAMLEDYSPVFAGFYLYYPSRRHIAPK
CHHHHHHHHHHCCCCEEECCHHHCCCCCCCCCEEEEEECCCHHHEEEEEEECCCCCCCHH
LRAFIDHVRLSRER
HHHHHHHHHHCCCC
>Mature Secondary Structure 
GIALVRRTTRSVSLTEAGQQLYADVSPSIGAISQAAQAASSLSGTVRGQLRLAVSSIAE
CEEEEECCCCCEEHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
RFLSGPLLASFADAHPDVQLDIVVTDEEFDIVAEQYDAGVRLGELIEQDMIAVPVSVPQR
HHHCCCHHHHHHCCCCCEEEEEEEECCCHHHHHHHHCCCCHHHHHHHHHHEEECCCCCHH
QLAVCSAEYRDRFGLPTQPRELIDHRCIGWRARPGVAPYRWEFAENGREFAVAVQPDFTT
HHHHHHHHHHHCCCCCCCHHHHHHHHCCCEECCCCCCCEEEECCCCCCEEEEEECCCCCC
NDMQLMIKLACAGAGITFGMEETFRPHLESGKLIAMLEDYSPVFAGFYLYYPSRRHIAPK
CHHHHHHHHHHCCCCEEECCHHHCCCCCCCCCEEEEEECCCHHHEEEEEEECCCCCCCHH
LRAFIDHVRLSRER
HHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]