Definition | Agrobacterium tumefaciens str. C58 chromosome circular, complete sequence. |
---|---|
Accession | NC_003062 |
Length | 2,841,580 |
Click here to switch to the map view.
The map label for this gene is 159184301
Identifier: 159184301
GI number: 159184301
Start: 411286
End: 412248
Strand: Reverse
Name: 159184301
Synonym: Atu0415
Alternate gene names: NA
Gene position: 412248-411286 (Counterclockwise)
Preceding gene: 15887766
Following gene: 159184300
Centisome position: 14.51
GC content: 61.58
Gene sequence:
>963_bases ATGCTACCGTCCGTGCTGAAAGACAATCTGCGTCTTCCGGTCATAGCATCACCGCTATTCATCATTTCGCATCCGCAACT GACGCTGGCGCAATGCAAGGCCGGCGTCATCGGCGCTTTCCCGGCATTAAACGCGCGACCTGAAAGCCAGCTCGACGAAT GGCTGGCGATGATCACCGAAGAGCTAGCAGCGTATAACCGGGCCAATCCCGAGCGTCCGGCGGCACCCTTCGCGGTCAAT CAGATCGTACACATGTCCAATCGCCGGTTGGAACATGATCTCGGCCTTTGCGTGAAATACAAGGTGCCGGTGGTAATTTC GTCGCTCGGCGCCGTGCCGGAGGTCAATGCCGCCGTGCATTCCTATGGCGGCATCGTGCTGCACGACGTCATCAACGATC GCCACGCCCGCTCCGCCATCCGCAAGGGTGCCGACGGGTTGATCGCGGTGGCGGCGGGTGCGGGCGGACATGCGGGCACG CTTTCGCCCTTCGCCCTCATTCAGGAAATCCGTGAATGGTTCGACGGTCCGCTGCTTCTGGCCGGCGCCATCGCCAATGG CGGCTCCATCCTCGCGGCACAGGCCATGGGCGCTGACATGGCCTATATCGGCTCGCCCTTCATCGCCACCGAAGAGGCGC GTGCTTCCGACGGTTATAAACAGGCGCTCGTCGACGCGCAGGCGAAGGACATCGTCTATTCGAATTATTTCACCGGCGTG CACGGCAACTATCTGAAAAGCTCAATCGTTGCCTCCGGCATGGACCCCGACAACCTGCCCGAAGCCGACCCTTCAAAAAT GGATTTTGAGACCGCCACCGGCGGTGCCAAGGCCTGGAAGGACATATGGGGCGCGGGCCAGGGCATCGGCGCCATCAAGG CGGTGGAACCGGTGGCCGCACTCGTCGATCGGTTGGCCGCGGAATATGAAGCAGCGAAAGGCCGGATTTGCGCCAAGGCC TGA
Upstream 100 bases:
>100_bases GCAGGTTCGGCAGGTCAATGCCGCGCTGTTTTCGCTTTCAATCCGTGGCCGAACGCGTTATTGACTTACGTGCGCGTAAA CGTAATCCGTGGGAGGAGAC
Downstream 100 bases:
>100_bases CGCCTTGTAAACAATGGACAGGCAAAGCTTTTTGCGGAAATTTCAAAACCAGCACATTCAAGGCTTGAAATCCGTCAGCA TTGCCTGTATCAGCCCGCCA
Product: hypothetical protein
Products: NA
Alternate protein names: Nitroalkane oxidase [H]
Number of amino acids: Translated: 320; Mature: 320
Protein sequence:
>320_residues MLPSVLKDNLRLPVIASPLFIISHPQLTLAQCKAGVIGAFPALNARPESQLDEWLAMITEELAAYNRANPERPAAPFAVN QIVHMSNRRLEHDLGLCVKYKVPVVISSLGAVPEVNAAVHSYGGIVLHDVINDRHARSAIRKGADGLIAVAAGAGGHAGT LSPFALIQEIREWFDGPLLLAGAIANGGSILAAQAMGADMAYIGSPFIATEEARASDGYKQALVDAQAKDIVYSNYFTGV HGNYLKSSIVASGMDPDNLPEADPSKMDFETATGGAKAWKDIWGAGQGIGAIKAVEPVAALVDRLAAEYEAAKGRICAKA
Sequences:
>Translated_320_residues MLPSVLKDNLRLPVIASPLFIISHPQLTLAQCKAGVIGAFPALNARPESQLDEWLAMITEELAAYNRANPERPAAPFAVN QIVHMSNRRLEHDLGLCVKYKVPVVISSLGAVPEVNAAVHSYGGIVLHDVINDRHARSAIRKGADGLIAVAAGAGGHAGT LSPFALIQEIREWFDGPLLLAGAIANGGSILAAQAMGADMAYIGSPFIATEEARASDGYKQALVDAQAKDIVYSNYFTGV HGNYLKSSIVASGMDPDNLPEADPSKMDFETATGGAKAWKDIWGAGQGIGAIKAVEPVAALVDRLAAEYEAAKGRICAKA >Mature_320_residues MLPSVLKDNLRLPVIASPLFIISHPQLTLAQCKAGVIGAFPALNARPESQLDEWLAMITEELAAYNRANPERPAAPFAVN QIVHMSNRRLEHDLGLCVKYKVPVVISSLGAVPEVNAAVHSYGGIVLHDVINDRHARSAIRKGADGLIAVAAGAGGHAGT LSPFALIQEIREWFDGPLLLAGAIANGGSILAAQAMGADMAYIGSPFIATEEARASDGYKQALVDAQAKDIVYSNYFTGV HGNYLKSSIVASGMDPDNLPEADPSKMDFETATGGAKAWKDIWGAGQGIGAIKAVEPVAALVDRLAAEYEAAKGRICAKA
Specific function: Catalyzes the oxidation of alkyl nitronates to produce the corresponding carbonyl compounds and nitrites [H]
COG id: COG2070
COG function: function code R; Dioxygenases related to 2-nitropropane dioxygenase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the nitronate monooxygenase family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004136 - InterPro: IPR013785 [H]
Pfam domain/function: PF03060 NPD [H]
EC number: =1.13.12.16 [H]
Molecular weight: Translated: 33643; Mature: 33643
Theoretical pI: Translated: 6.09; Mature: 6.09
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLPSVLKDNLRLPVIASPLFIISHPQLTLAQCKAGVIGAFPALNARPESQLDEWLAMITE CCCHHHHCCCCCCEEECCEEEEECCCEEHHHHCCCCEECCCCCCCCCHHHHHHHHHHHHH ELAAYNRANPERPAAPFAVNQIVHMSNRRLEHDLGLCVKYKVPVVISSLGAVPEVNAAVH HHHHHCCCCCCCCCCCHHHHHHHHHHCCHHHHHCCEEEEEECHHHHHHHCCCCCHHHHHH SYGGIVLHDVINDRHARSAIRKGADGLIAVAAGAGGHAGTLSPFALIQEIREWFDGPLLL HCCCEEEEHHHCCHHHHHHHHCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCEEE AGAIANGGSILAAQAMGADMAYIGSPFIATEEARASDGYKQALVDAQAKDIVYSNYFTGV EEECCCCCCEEEHHHCCCCHHHHCCCCEECCHHHCCCCHHHHHHHHHHHHHHHHCCCCCC HGNYLKSSIVASGMDPDNLPEADPSKMDFETATGGAKAWKDIWGAGQGIGAIKAVEPVAA CCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHH LVDRLAAEYEAAKGRICAKA HHHHHHHHHHHHCCCEECCC >Mature Secondary Structure MLPSVLKDNLRLPVIASPLFIISHPQLTLAQCKAGVIGAFPALNARPESQLDEWLAMITE CCCHHHHCCCCCCEEECCEEEEECCCEEHHHHCCCCEECCCCCCCCCHHHHHHHHHHHHH ELAAYNRANPERPAAPFAVNQIVHMSNRRLEHDLGLCVKYKVPVVISSLGAVPEVNAAVH HHHHHCCCCCCCCCCCHHHHHHHHHHCCHHHHHCCEEEEEECHHHHHHHCCCCCHHHHHH SYGGIVLHDVINDRHARSAIRKGADGLIAVAAGAGGHAGTLSPFALIQEIREWFDGPLLL HCCCEEEEHHHCCHHHHHHHHCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCEEE AGAIANGGSILAAQAMGADMAYIGSPFIATEEARASDGYKQALVDAQAKDIVYSNYFTGV EEECCCCCCEEEHHHCCCCHHHHCCCCEECCHHHCCCCHHHHHHHHHHHHHHHHCCCCCC HGNYLKSSIVASGMDPDNLPEADPSKMDFETATGGAKAWKDIWGAGQGIGAIKAVEPVAA CCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHH LVDRLAAEYEAAKGRICAKA HHHHHHHHHHHHCCCEECCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA