Definition | Agrobacterium tumefaciens str. C58 chromosome circular, complete sequence. |
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Accession | NC_003062 |
Length | 2,841,580 |
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The map label for this gene is 159184229
Identifier: 159184229
GI number: 159184229
Start: 245112
End: 246185
Strand: Reverse
Name: 159184229
Synonym: Atu0247
Alternate gene names: NA
Gene position: 246185-245112 (Counterclockwise)
Preceding gene: 15887599
Following gene: 159184227
Centisome position: 8.66
GC content: 61.08
Gene sequence:
>1074_bases ATGCGCACCTTTACGACCATCACGACCTTCCTGTTTTCCGCTCTCGCCATCCAGCCGCTTTTCGCGGGCGAGGCCGTTGG CGTCAGCGACATCGCCATCCATTCGCCGGACCGCGGCAAGGATCTTGCCGTGACGATCTGGTATCCATCCGACGGCAAGG GTACACAGGTGCTTTCCGGAGAGGATCGGATTTTTCAGGGCACACCCGCCTTCAAGGACGCTGCGGTGCAGCCGGGCCGC CTTCCGTTGGTGCTTTTATCTCACGGCTCGGGTTCACGAGTGAGCGGCATGGCCTGGATCGCCGAAAAACTTGCGAGTGA GGGTTTCATCGTCGCCGGCACCAACCATCCCGGCACCACCAGCGGCGATTCCACACCGGCCGATACGCCGAAAATCTGGG AGCGTACCAGCGATCTTTCCGCGATCGTCACGGCGCTCACGACACAAGGCAAATGGTCCGCCTCGATTGATGCGGGGAGA ATCGGCGTCCTCGGCTTTTCGCTGGGCGGTAGCGCGGCAATGGAGATATCCGGCGCCCGCGCCGATCTCGAAGCCTATGC GCGTTATTGTGAAAAGGAGGCAGCGATGATGGATTGCCAATGGTTTGACGGTGGCCAGGCCTATGTCAATAACGAGCCGG TCAGCGTGCCGAAGCTCGATCTCAGAACCCTCGACAAGGCCCGTTTCGAACAGCAGAACCGCGACCCCCGTATCCGTTCC GCCGTACTGGTCGATCCCGGCCTCGCACTCGCCTTCCAACCTGAGAGCTTGAGAAAGATCGACATTCCGCTCACCTTCAT CAATCTCGGCAGCAAGGGAAAAATTCCGCCGGCGGTGCTGGCGGACAGGCTGGCGGCCGAAGTGCCGGGTGCAACCTATC GGCAGGTCGACGAGGCCGACCATTTCAGCTTCCTGCCCCTCTGCAAGGAAGGCGCCAGCGCATTTCTCAAATCCGTCGGC GAGCGGGATCCGATCTGCGAACCGACCGGGCCGCGGGATCGTTCCGATATTCACGCCGAGCTGGAAAAGATGATCGTTGC CGCCTTCAACCGAACGCTGAAGCCCGGACAGTAA
Upstream 100 bases:
>100_bases ACCAGATCGCGTTTCGGTACGACCTCAAACGCGATCAAGGACGCAAAAAACCGGTGACGGCGCAGATTGCATCTCGTTCT TTTCACCGCACGGGGTTTTC
Downstream 100 bases:
>100_bases GCCCCAGCAATGTGCTAGCCGATGCGCTTGTAAAACAGGGTCGTGCCGCAATAACGCCCGTCGGGAAACAGGGCGTAATC GGGAATGACGCCAACCCGCT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 357; Mature: 357
Protein sequence:
>357_residues MRTFTTITTFLFSALAIQPLFAGEAVGVSDIAIHSPDRGKDLAVTIWYPSDGKGTQVLSGEDRIFQGTPAFKDAAVQPGR LPLVLLSHGSGSRVSGMAWIAEKLASEGFIVAGTNHPGTTSGDSTPADTPKIWERTSDLSAIVTALTTQGKWSASIDAGR IGVLGFSLGGSAAMEISGARADLEAYARYCEKEAAMMDCQWFDGGQAYVNNEPVSVPKLDLRTLDKARFEQQNRDPRIRS AVLVDPGLALAFQPESLRKIDIPLTFINLGSKGKIPPAVLADRLAAEVPGATYRQVDEADHFSFLPLCKEGASAFLKSVG ERDPICEPTGPRDRSDIHAELEKMIVAAFNRTLKPGQ
Sequences:
>Translated_357_residues MRTFTTITTFLFSALAIQPLFAGEAVGVSDIAIHSPDRGKDLAVTIWYPSDGKGTQVLSGEDRIFQGTPAFKDAAVQPGR LPLVLLSHGSGSRVSGMAWIAEKLASEGFIVAGTNHPGTTSGDSTPADTPKIWERTSDLSAIVTALTTQGKWSASIDAGR IGVLGFSLGGSAAMEISGARADLEAYARYCEKEAAMMDCQWFDGGQAYVNNEPVSVPKLDLRTLDKARFEQQNRDPRIRS AVLVDPGLALAFQPESLRKIDIPLTFINLGSKGKIPPAVLADRLAAEVPGATYRQVDEADHFSFLPLCKEGASAFLKSVG ERDPICEPTGPRDRSDIHAELEKMIVAAFNRTLKPGQ >Mature_357_residues MRTFTTITTFLFSALAIQPLFAGEAVGVSDIAIHSPDRGKDLAVTIWYPSDGKGTQVLSGEDRIFQGTPAFKDAAVQPGR LPLVLLSHGSGSRVSGMAWIAEKLASEGFIVAGTNHPGTTSGDSTPADTPKIWERTSDLSAIVTALTTQGKWSASIDAGR IGVLGFSLGGSAAMEISGARADLEAYARYCEKEAAMMDCQWFDGGQAYVNNEPVSVPKLDLRTLDKARFEQQNRDPRIRS AVLVDPGLALAFQPESLRKIDIPLTFINLGSKGKIPPAVLADRLAAEVPGATYRQVDEADHFSFLPLCKEGASAFLKSVG ERDPICEPTGPRDRSDIHAELEKMIVAAFNRTLKPGQ
Specific function: Unknown
COG id: COG4188
COG function: function code R; Predicted dienelactone hydrolase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 38261; Mature: 38261
Theoretical pI: Translated: 5.47; Mature: 5.47
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRTFTTITTFLFSALAIQPLFAGEAVGVSDIAIHSPDRGKDLAVTIWYPSDGKGTQVLSG CCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCEEEEEEEECCCCCCCEEECC EDRIFQGTPAFKDAAVQPGRLPLVLLSHGSGSRVSGMAWIAEKLASEGFIVAGTNHPGTT CCCEEECCCCCHHHCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHCCCEEEEECCCCCCC SGDSTPADTPKIWERTSDLSAIVTALTTQGKWSASIDAGRIGVLGFSLGGSAAMEISGAR CCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEECCCCEEEEECCCH ADLEAYARYCEKEAAMMDCQWFDGGQAYVNNEPVSVPKLDLRTLDKARFEQQNRDPRIRS HHHHHHHHHHHHHHHHEEEEEECCCEEEECCCCCCCCCCHHHHHHHHHHHHCCCCCCCEE AVLVDPGLALAFQPESLRKIDIPLTFINLGSKGKIPPAVLADRLAAEVPGATYRQVDEAD EEEECCCEEEEECCCCCEEEECEEEEEECCCCCCCCHHHHHHHHHHHCCCCHHHHHCCCC HFSFLPLCKEGASAFLKSVGERDPICEPTGPRDRSDIHAELEKMIVAAFNRTLKPGQ CCEEHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCC >Mature Secondary Structure MRTFTTITTFLFSALAIQPLFAGEAVGVSDIAIHSPDRGKDLAVTIWYPSDGKGTQVLSG CCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCEEEEEEEECCCCCCCEEECC EDRIFQGTPAFKDAAVQPGRLPLVLLSHGSGSRVSGMAWIAEKLASEGFIVAGTNHPGTT CCCEEECCCCCHHHCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHCCCEEEEECCCCCCC SGDSTPADTPKIWERTSDLSAIVTALTTQGKWSASIDAGRIGVLGFSLGGSAAMEISGAR CCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEECCCCEEEEECCCH ADLEAYARYCEKEAAMMDCQWFDGGQAYVNNEPVSVPKLDLRTLDKARFEQQNRDPRIRS HHHHHHHHHHHHHHHHEEEEEECCCEEEECCCCCCCCCCHHHHHHHHHHHHCCCCCCCEE AVLVDPGLALAFQPESLRKIDIPLTFINLGSKGKIPPAVLADRLAAEVPGATYRQVDEAD EEEECCCEEEEECCCCCEEEECEEEEEECCCCCCCCHHHHHHHHHHHCCCCHHHHHCCCC HFSFLPLCKEGASAFLKSVGERDPICEPTGPRDRSDIHAELEKMIVAAFNRTLKPGQ CCEEHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA