Definition | Agrobacterium tumefaciens str. C58 chromosome circular, complete sequence. |
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Accession | NC_003062 |
Length | 2,841,580 |
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The map label for this gene is 159184181
Identifier: 159184181
GI number: 159184181
Start: 156090
End: 156596
Strand: Reverse
Name: 159184181
Synonym: Atu0147
Alternate gene names: NA
Gene position: 156596-156090 (Counterclockwise)
Preceding gene: 159184182
Following gene: 159184178
Centisome position: 5.51
GC content: 54.24
Gene sequence:
>507_bases GTGGGCGCGGTGGAATTCGCCATCGTCTTCCCGATATTGCTCGCGCTTTATCTGACCTCTTTCGAGTTGACGATCGGCTA CAATACCTACAAGCGGGCAAGCAGTGCGGCCGCCACCATCAACGACCTGATATCAAAAACAGGTTCCGTCGACAAAACCT ACCTCACAGGCATGCAGGATGTCGCAGCCGCGGTTTTTGCGCCCTACAGTACCAAGGGCCTGAAACTGAAGATCAGCGGC ATCAAGATCGACGCGCAAAAACAGGCAAAAATCACCTGGTCCTGGGATGAGAAGAATCTGAGACCCTATGCGGTGGGATC AGTGGTCACCGTTCCGACGCGCCTGCTGGTGCAAGACAGCTTCCTCATTCATGTGGAACTTTCCGTCCCACATGAATTGC TGATGTTCATGCCTGATGTCGCCTCATCCGGCACAAAGTCGATCACGATCGGCAGGGATTATTTCTTCAAGCAGCGTGAC GCCGAGACCGCCTGCACCAATTGCTGA
Upstream 100 bases:
>100_bases CAGGCGGGGGGGCATGATGGAAAGGCTTGTCTTGGTTGCGGCAAGCGGCAGGCGGCGTCTGATCGCGCTCGTTTCACGCT TTGCCGGAGATAGCCGGGGC
Downstream 100 bases:
>100_bases GGCAATCGGTGCTCCGGCGGCCCCTTTTACGGTTGGGTCTAATAGACGTCGCGCAGATAGCGTTTTTCACGCTTTAGCCG GTTGACATAGTCGCTTGCGG
Product: hypothetical protein
Products: NA
Alternate protein names: Pilus Assembly Protein Contains TadE Domain; Transmembrane Protein
Number of amino acids: Translated: 168; Mature: 167
Protein sequence:
>168_residues MGAVEFAIVFPILLALYLTSFELTIGYNTYKRASSAAATINDLISKTGSVDKTYLTGMQDVAAAVFAPYSTKGLKLKISG IKIDAQKQAKITWSWDEKNLRPYAVGSVVTVPTRLLVQDSFLIHVELSVPHELLMFMPDVASSGTKSITIGRDYFFKQRD AETACTNC
Sequences:
>Translated_168_residues MGAVEFAIVFPILLALYLTSFELTIGYNTYKRASSAAATINDLISKTGSVDKTYLTGMQDVAAAVFAPYSTKGLKLKISG IKIDAQKQAKITWSWDEKNLRPYAVGSVVTVPTRLLVQDSFLIHVELSVPHELLMFMPDVASSGTKSITIGRDYFFKQRD AETACTNC >Mature_167_residues GAVEFAIVFPILLALYLTSFELTIGYNTYKRASSAAATINDLISKTGSVDKTYLTGMQDVAAAVFAPYSTKGLKLKISGI KIDAQKQAKITWSWDEKNLRPYAVGSVVTVPTRLLVQDSFLIHVELSVPHELLMFMPDVASSGTKSITIGRDYFFKQRDA ETACTNC
Specific function: Unknown
COG id: COG4961
COG function: function code U; Flp pilus assembly protein TadG
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 18440; Mature: 18308
Theoretical pI: Translated: 8.64; Mature: 8.64
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGAVEFAIVFPILLALYLTSFELTIGYNTYKRASSAAATINDLISKTGSVDKTYLTGMQD CCCHHHHHHHHHHHHHHHHHEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHCHHH VAAAVFAPYSTKGLKLKISGIKIDAQKQAKITWSWDEKNLRPYAVGSVVTVPTRLLVQDS HHHHHHCCCCCCCEEEEEEEEEEECCCCEEEEEEECCCCCCEEECCCEEECCCEEEEECC FLIHVELSVPHELLMFMPDVASSGTKSITIGRDYFFKQRDAETACTNC EEEEEEECCCHHHHHHCCCCCCCCCCEEEECCHHHCCCCCCCHHCCCC >Mature Secondary Structure GAVEFAIVFPILLALYLTSFELTIGYNTYKRASSAAATINDLISKTGSVDKTYLTGMQD CCHHHHHHHHHHHHHHHHHEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHCHHH VAAAVFAPYSTKGLKLKISGIKIDAQKQAKITWSWDEKNLRPYAVGSVVTVPTRLLVQDS HHHHHHCCCCCCCEEEEEEEEEEECCCCEEEEEEECCCCCCEEECCCEEECCCEEEEECC FLIHVELSVPHELLMFMPDVASSGTKSITIGRDYFFKQRDAETACTNC EEEEEEECCCHHHHHHCCCCCCCCCCEEEECCHHHCCCCCCCHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA