Definition | Agrobacterium tumefaciens str. C58 chromosome circular, complete sequence. |
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Accession | NC_003062 |
Length | 2,841,580 |
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The map label for this gene is yfiS [H]
Identifier: 159184153
GI number: 159184153
Start: 94974
End: 96485
Strand: Direct
Name: yfiS [H]
Synonym: Atu0091
Alternate gene names: 159184153
Gene position: 94974-96485 (Clockwise)
Preceding gene: 15887435
Following gene: 159184154
Centisome position: 3.34
GC content: 62.1
Gene sequence:
>1512_bases ATGATGACCTCGCTTTCGAGTTCGGAAAACATGATCGCGCTGGTGCAGGCTTCCACCTCTTTGCCGATCATGATGTTCTC GCTGATTTCAGGCGCGCTGGCCGACAGTTTCGACCGTCGCCGCATTATGATTTCGGCGCAGCTTCTGATGCTGACGGCCT CCGTGCTGCTCACCGTCTTTGCCTGGTCCGGCTGGCTCACGCCCTGGCTGCTGTTGTTCTTCACCTTCATGATCGGCTGC GGAACGGCGCTCAACAATCCCTCCTGGCAGGCCTCGGTCGGCGAAATGGTGCCGCGTGAGGATTTGCCCGCCGCCGTGAC GCTGAACAGCGTCGGCTTCAACATCACCCGCAGCGTCGGCCCGGCCATCGGCGGTATCATCGTTGCCGCCGCCGGTGCTG CTGCCGCCTTTTTCGTGAATGCGCTGAGCTATTTCACCCTGATCTATGCGCTGTTTCGCTGGCAGCCGCCCAAATATGCG TCGACCCTGCCGCGCGAGCAGCTTCTGGCCGCCATCTCGGCCGGCATGCGTTACGTGGCGATGTCGCCCAATATCGGCAA GGTGCTGGTGCGCGGCTTTCTCTTCGGCCTCTCCGCCAGTGCCATTCTTGCCCTGATGCCCATTGTCGCCCGCGATCTGG TCGAGGGCGGCCCGCTGACCTACGGCGTCATGCTGGGTGCCTTCGGCGTCGGCGCCATTGGCGGTGCGCTCGTCAGCGCC CGGTTGCGGGAAGTCATGTCCAGCGAATGGATCGTGCGTGTTGCCTTTCTGGGCTTCGCTTTCAGCTCCGGCGTAACGGC GGTCAGCACCAGTTCGATTATCACCTCGCTGGTTCTCGCCATAGCCGGTGCCTGCTGGGTGCTGGCGCTATCGCTCTTCA ACACGATCGTCCAGCTGTCCACCCCGCGCTGGGTGGTCGGCCGGGCGCTGTCGCTCTATCAGACGCTCACCTTCGGCGGC ATCGCTGTCGGCAGCTGGCTGTGGGGCGAGTTGGCGGAAGATTACGGCATTTCCTATTCGCTTCTCTGTTCGTGCGTGCT GATGCTGCTCGGCGTTGTCGTCGGCCTCAAGCTCGCCATGCCCGCCTTCGCTTCGCTCAATCTCGATCCGCTCAATCGTT TCGTGGAGCCGCCGCTGAGACTCGACGTCAAGCCGCGTAGTGGACCCATCGCCATTCTGATCGATTATGAAATCCATGAT GAGGATCTTGGCGAATTCCTGCCGCTGATGGCGGAGCGCCGCCGCATCCGTCTGCGCGATGGCGCACGCAACTGGAACCT GATGCGCGATCTCGAAAACCCCGATATCTGGACGGAAAGTTACCACGTGCCGACATGGGTGGAATATGTCCGCCACAACC ATCGTCGCACCCAGGCGGATGCGGAAGCCTGGGACCGGCTACTGGAGCTTCACCGCGGCAAGACGCGGCCGCGGGTGCAC CGGATGATCGAACGGCAGACCATTCCGCCAACCGACGATATCTTTCACAAGCCCCATACCGACCAGCATTAA
Upstream 100 bases:
>100_bases GCCACTCGCGCCTTTAAGGCATTTGACTTACAGACGAATCTGGATCGCGAGCCTTGCCTCGAATTTCGGCGGATTGATCC AGGCGGTGGGTGCCGCGTGG
Downstream 100 bases:
>100_bases AAGACGATGGGCCGGAGACGGATTATTTCAGCTTCGCCTTCAGTGTCGCATCGGGAAAACATGTCGGTGCAAGGCCGTTT TTCGACTGCCAGTCACCGAG
Product: MFS permease
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 503; Mature: 503
Protein sequence:
>503_residues MMTSLSSSENMIALVQASTSLPIMMFSLISGALADSFDRRRIMISAQLLMLTASVLLTVFAWSGWLTPWLLLFFTFMIGC GTALNNPSWQASVGEMVPREDLPAAVTLNSVGFNITRSVGPAIGGIIVAAAGAAAAFFVNALSYFTLIYALFRWQPPKYA STLPREQLLAAISAGMRYVAMSPNIGKVLVRGFLFGLSASAILALMPIVARDLVEGGPLTYGVMLGAFGVGAIGGALVSA RLREVMSSEWIVRVAFLGFAFSSGVTAVSTSSIITSLVLAIAGACWVLALSLFNTIVQLSTPRWVVGRALSLYQTLTFGG IAVGSWLWGELAEDYGISYSLLCSCVLMLLGVVVGLKLAMPAFASLNLDPLNRFVEPPLRLDVKPRSGPIAILIDYEIHD EDLGEFLPLMAERRRIRLRDGARNWNLMRDLENPDIWTESYHVPTWVEYVRHNHRRTQADAEAWDRLLELHRGKTRPRVH RMIERQTIPPTDDIFHKPHTDQH
Sequences:
>Translated_503_residues MMTSLSSSENMIALVQASTSLPIMMFSLISGALADSFDRRRIMISAQLLMLTASVLLTVFAWSGWLTPWLLLFFTFMIGC GTALNNPSWQASVGEMVPREDLPAAVTLNSVGFNITRSVGPAIGGIIVAAAGAAAAFFVNALSYFTLIYALFRWQPPKYA STLPREQLLAAISAGMRYVAMSPNIGKVLVRGFLFGLSASAILALMPIVARDLVEGGPLTYGVMLGAFGVGAIGGALVSA RLREVMSSEWIVRVAFLGFAFSSGVTAVSTSSIITSLVLAIAGACWVLALSLFNTIVQLSTPRWVVGRALSLYQTLTFGG IAVGSWLWGELAEDYGISYSLLCSCVLMLLGVVVGLKLAMPAFASLNLDPLNRFVEPPLRLDVKPRSGPIAILIDYEIHD EDLGEFLPLMAERRRIRLRDGARNWNLMRDLENPDIWTESYHVPTWVEYVRHNHRRTQADAEAWDRLLELHRGKTRPRVH RMIERQTIPPTDDIFHKPHTDQH >Mature_503_residues MMTSLSSSENMIALVQASTSLPIMMFSLISGALADSFDRRRIMISAQLLMLTASVLLTVFAWSGWLTPWLLLFFTFMIGC GTALNNPSWQASVGEMVPREDLPAAVTLNSVGFNITRSVGPAIGGIIVAAAGAAAAFFVNALSYFTLIYALFRWQPPKYA STLPREQLLAAISAGMRYVAMSPNIGKVLVRGFLFGLSASAILALMPIVARDLVEGGPLTYGVMLGAFGVGAIGGALVSA RLREVMSSEWIVRVAFLGFAFSSGVTAVSTSSIITSLVLAIAGACWVLALSLFNTIVQLSTPRWVVGRALSLYQTLTFGG IAVGSWLWGELAEDYGISYSLLCSCVLMLLGVVVGLKLAMPAFASLNLDPLNRFVEPPLRLDVKPRSGPIAILIDYEIHD EDLGEFLPLMAERRRIRLRDGARNWNLMRDLENPDIWTESYHVPTWVEYVRHNHRRTQADAEAWDRLLELHRGKTRPRVH RMIERQTIPPTDDIFHKPHTDQH
Specific function: Unknown
COG id: COG0477
COG function: function code GEPR; Permeases of the major facilitator superfamily
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the major facilitator superfamily. TCR/tet family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR020846 - InterPro: IPR011701 - InterPro: IPR016196 [H]
Pfam domain/function: PF07690 MFS_1 [H]
EC number: NA
Molecular weight: Translated: 55228; Mature: 55228
Theoretical pI: Translated: 8.32; Mature: 8.32
Prosite motif: PS50850 MFS
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 3.8 %Met (Translated Protein) 4.6 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 3.8 %Met (Mature Protein) 4.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MMTSLSSSENMIALVQASTSLPIMMFSLISGALADSFDRRRIMISAQLLMLTASVLLTVF CCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHH AWSGWLTPWLLLFFTFMIGCGTALNNPSWQASVGEMVPREDLPAAVTLNSVGFNITRSVG HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHCCCCCCCCCEEEEECCCCCHHHHHH PAIGGIIVAAAGAAAAFFVNALSYFTLIYALFRWQPPKYASTLPREQLLAAISAGMRYVA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCHHHHHHHHHHCCEEEE MSPNIGKVLVRGFLFGLSASAILALMPIVARDLVEGGPLTYGVMLGAFGVGAIGGALVSA ECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH RLREVMSSEWIVRVAFLGFAFSSGVTAVSTSSIITSLVLAIAGACWVLALSLFNTIVQLS HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC TPRWVVGRALSLYQTLTFGGIAVGSWLWGELAEDYGISYSLLCSCVLMLLGVVVGLKLAM CCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH PAFASLNLDPLNRFVEPPLRLDVKPRSGPIAILIDYEIHDEDLGEFLPLMAERRRIRLRD HHHHCCCHHHHHHHCCCCCEEEECCCCCCEEEEEEEEECHHHHHHHHHHHHHHHHEEECC GARNWNLMRDLENPDIWTESYHVPTWVEYVRHNHRRTQADAEAWDRLLELHRGKTRPRVH CCCCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHH RMIERQTIPPTDDIFHKPHTDQH HHHHHCCCCCCHHHCCCCCCCCC >Mature Secondary Structure MMTSLSSSENMIALVQASTSLPIMMFSLISGALADSFDRRRIMISAQLLMLTASVLLTVF CCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHH AWSGWLTPWLLLFFTFMIGCGTALNNPSWQASVGEMVPREDLPAAVTLNSVGFNITRSVG HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHCCCCCCCCCEEEEECCCCCHHHHHH PAIGGIIVAAAGAAAAFFVNALSYFTLIYALFRWQPPKYASTLPREQLLAAISAGMRYVA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCHHHHHHHHHHCCEEEE MSPNIGKVLVRGFLFGLSASAILALMPIVARDLVEGGPLTYGVMLGAFGVGAIGGALVSA ECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH RLREVMSSEWIVRVAFLGFAFSSGVTAVSTSSIITSLVLAIAGACWVLALSLFNTIVQLS HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC TPRWVVGRALSLYQTLTFGGIAVGSWLWGELAEDYGISYSLLCSCVLMLLGVVVGLKLAM CCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH PAFASLNLDPLNRFVEPPLRLDVKPRSGPIAILIDYEIHDEDLGEFLPLMAERRRIRLRD HHHHCCCHHHHHHHCCCCCEEEECCCCCCEEEEEEEEECHHHHHHHHHHHHHHHHEEECC GARNWNLMRDLENPDIWTESYHVPTWVEYVRHNHRRTQADAEAWDRLLELHRGKTRPRVH CCCCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHH RMIERQTIPPTDDIFHKPHTDQH HHHHHCCCCCCHHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8946165; 9384377 [H]