Definition | Agrobacterium tumefaciens str. C58 chromosome circular, complete sequence. |
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Accession | NC_003062 |
Length | 2,841,580 |
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The map label for this gene is 159184143
Identifier: 159184143
GI number: 159184143
Start: 59238
End: 59627
Strand: Reverse
Name: 159184143
Synonym: Atu0056
Alternate gene names: NA
Gene position: 59627-59238 (Counterclockwise)
Preceding gene: 15887416
Following gene: 159184142
Centisome position: 2.1
GC content: 48.97
Gene sequence:
>390_bases ATGGATCAAAGCTTATTCGCAGCTCCCCACGGCTTTTCGCAGCGTATCACGTCCTTCTTCGCCTGTGCATGCCAAGGCAT CCACCAAATGCCCTTAATTCACTTCTTCGTTCTCATTGTCTATGCTCATCATCTGTTGGATTTGGCAGAACCTTTCCTTC TCGCTTACGCTCAAAGGGGTGCCAAATCGGGCAATCCGGGCAAAACTCAATCTGCCGCGAAAGCCATTCCATCTCTAACG ATAAAGAGAGGAACAACGGTTACGGTTACCTTTTACAACCGCAACACCAACGATGACATCGACGTGTTCGATACAATCCT CTTTGAAGGCACGCCGGTGCACTTCGAGGTCGTATCATTAAGACCAGCTTCTCGAGATATCATCCGGTGA
Upstream 100 bases:
>100_bases AAGTAAGATACCTTATAATAATGCTTGGAAACCCAGGCCGTTCGTTAAAACAGACTGGATTTTCCAAGCATTTAAGGTGG GTTGCCCCATTCGGAGATCC
Downstream 100 bases:
>100_bases TGCGCGGTCAGGCAACATCAATCCAGCATTCCCATCAGAGGAGCTTAAAGCTCCAACAACAAAAATGCCTCGGACAAGCG ATCCTTCCTACCTCCAACCC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 129; Mature: 129
Protein sequence:
>129_residues MDQSLFAAPHGFSQRITSFFACACQGIHQMPLIHFFVLIVYAHHLLDLAEPFLLAYAQRGAKSGNPGKTQSAAKAIPSLT IKRGTTVTVTFYNRNTNDDIDVFDTILFEGTPVHFEVVSLRPASRDIIR
Sequences:
>Translated_129_residues MDQSLFAAPHGFSQRITSFFACACQGIHQMPLIHFFVLIVYAHHLLDLAEPFLLAYAQRGAKSGNPGKTQSAAKAIPSLT IKRGTTVTVTFYNRNTNDDIDVFDTILFEGTPVHFEVVSLRPASRDIIR >Mature_129_residues MDQSLFAAPHGFSQRITSFFACACQGIHQMPLIHFFVLIVYAHHLLDLAEPFLLAYAQRGAKSGNPGKTQSAAKAIPSLT IKRGTTVTVTFYNRNTNDDIDVFDTILFEGTPVHFEVVSLRPASRDIIR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 14323; Mature: 14323
Theoretical pI: Translated: 8.26; Mature: 8.26
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDQSLFAAPHGFSQRITSFFACACQGIHQMPLIHFFVLIVYAHHLLDLAEPFLLAYAQRG CCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC AKSGNPGKTQSAAKAIPSLTIKRGTTVTVTFYNRNTNDDIDVFDTILFEGTPVHFEVVSL CCCCCCCCCHHHHHHCCCEEECCCCEEEEEEEECCCCCCHHHHHHHHHCCCCCEEEEEEE RPASRDIIR CCCCCCCCC >Mature Secondary Structure MDQSLFAAPHGFSQRITSFFACACQGIHQMPLIHFFVLIVYAHHLLDLAEPFLLAYAQRG CCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC AKSGNPGKTQSAAKAIPSLTIKRGTTVTVTFYNRNTNDDIDVFDTILFEGTPVHFEVVSL CCCCCCCCCHHHHHHCCCEEECCCCEEEEEEEECCCCCCHHHHHHHHHCCCCCEEEEEEE RPASRDIIR CCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA