Definition | Agrobacterium tumefaciens str. C58 chromosome circular, complete sequence. |
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Accession | NC_003062 |
Length | 2,841,580 |
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The map label for this gene is galU [C]
Identifier: 159184129
GI number: 159184129
Start: 26768
End: 27505
Strand: Reverse
Name: galU [C]
Synonym: Atu0025
Alternate gene names: 159184129
Gene position: 27505-26768 (Counterclockwise)
Preceding gene: 15887385
Following gene: 15887383
Centisome position: 0.97
GC content: 58.4
Gene sequence:
>738_bases ATGACGATCAAAAACGCGATGGTGCTGGCCGCCGGGCTTGGCACGCGCATGCGCCCGATCACGGATACGATCCCGAAGCC GCTTGTGAAGATCGCCGGCAAGCCGATGATCGATTACGCGCTCGACGCCCTTGTCGAAGCCGGGGCTGAAACCATCGTCG TCAATGTGCATCACCATGCCGAACAGATGATCTCCCACCTTGGACATCGCACCGATGCGGAAATTCTGATCTCGGATGAA CGCACGCAGCTGATGAATTCCGGCGGTGGGCTCGCAAAAGGCCTGAAGCTTCTGAAACCCGGCCCGGTCTTCGTCATGAA CGCGGATCTTTTCTGGATTGGTGAGCGGCTGAACGCCGTCAGCAACCTGCGCAAGCTAGCTCAATTCCTTGACCCGGCGC GTATGGACATGGCGCTGCTTTGCGTCGACATGGATCGCACCACCGGCCACAACGGCAAGAGGGATTTCAACCTTGCCGGC GAGGGAAAGCTGACGCGCTATCGCGATGGTGACGCTAACCCGGTGGTTTATGCCGGCGCCATCGCCATGGATTCGCGGCT GCTTGACGATGCGCCGGCGGACGCTTTCAACCTTAACATCTATTTCGACCGCGCCATTGAAAAAGACCGGCTTTTCGGCC TGTCGCTGGATGGCCACTGGATCACCGTGGGAACGCCTGACGCGATTGACGATGCGGAAAGCATCATCCGGCAATTCAGA GAAAAACGTTTCGCATGA
Upstream 100 bases:
>100_bases GTTATCTCGCTGACGCGCTTTCGCATCCCGAACTCGCGCCACTCCGGGAATGGTGTGTCCGTATGGGCATGGACTTTAAC GACTAACACGGTTGACCACG
Downstream 100 bases:
>100_bases CGCTCACCCACCACGCAAAGCGCGTCCTGACGATCGCTGCGGGAACACCGTTTCTCAAAACGCTCGCGGAAACGCTGTGT GACGGGCGGCTGACAGCCGG
Product: hypothetical protein
Products: NA
Alternate protein names: UDP-N-acetylglucosamine pyrophosphorylase; N-acetylglucosamine-1-phosphate uridyltransferase; Glucosamine-1-phosphate N-acetyltransferase [H]
Number of amino acids: Translated: 245; Mature: 244
Protein sequence:
>245_residues MTIKNAMVLAAGLGTRMRPITDTIPKPLVKIAGKPMIDYALDALVEAGAETIVVNVHHHAEQMISHLGHRTDAEILISDE RTQLMNSGGGLAKGLKLLKPGPVFVMNADLFWIGERLNAVSNLRKLAQFLDPARMDMALLCVDMDRTTGHNGKRDFNLAG EGKLTRYRDGDANPVVYAGAIAMDSRLLDDAPADAFNLNIYFDRAIEKDRLFGLSLDGHWITVGTPDAIDDAESIIRQFR EKRFA
Sequences:
>Translated_245_residues MTIKNAMVLAAGLGTRMRPITDTIPKPLVKIAGKPMIDYALDALVEAGAETIVVNVHHHAEQMISHLGHRTDAEILISDE RTQLMNSGGGLAKGLKLLKPGPVFVMNADLFWIGERLNAVSNLRKLAQFLDPARMDMALLCVDMDRTTGHNGKRDFNLAG EGKLTRYRDGDANPVVYAGAIAMDSRLLDDAPADAFNLNIYFDRAIEKDRLFGLSLDGHWITVGTPDAIDDAESIIRQFR EKRFA >Mature_244_residues TIKNAMVLAAGLGTRMRPITDTIPKPLVKIAGKPMIDYALDALVEAGAETIVVNVHHHAEQMISHLGHRTDAEILISDER TQLMNSGGGLAKGLKLLKPGPVFVMNADLFWIGERLNAVSNLRKLAQFLDPARMDMALLCVDMDRTTGHNGKRDFNLAGE GKLTRYRDGDANPVVYAGAIAMDSRLLDDAPADAFNLNIYFDRAIEKDRLFGLSLDGHWITVGTPDAIDDAESIIRQFRE KRFA
Specific function: Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetyl-glucosamine (UDP- GlcNAc). Responsible for the acetylation of GlcN-1-P to GlcNAc-1- P, and for the uridyl transfer from UTP to GlcNAc-1-P, to produce UDP-GlcN
COG id: COG1208
COG function: function code MJ; Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon)
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: In the C-terminal section; belongs to the transferase hexapeptide repeat family [H]
Homologues:
Organism=Caenorhabditis elegans, GI133931050, Length=236, Percent_Identity=29.6610169491525, Blast_Score=79, Evalue=3e-15, Organism=Saccharomyces cerevisiae, GI6320148, Length=230, Percent_Identity=26.0869565217391, Blast_Score=73, Evalue=3e-14, Organism=Drosophila melanogaster, GI21355443, Length=227, Percent_Identity=25.9911894273128, Blast_Score=80, Evalue=9e-16, Organism=Drosophila melanogaster, GI24644084, Length=227, Percent_Identity=25.9911894273128, Blast_Score=80, Evalue=9e-16,
Paralogues:
None
Copy number: 120 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 140 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 260 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005835 - InterPro: IPR011004 [H]
Pfam domain/function: PF00483 NTP_transferase [H]
EC number: =2.7.7.23; =2.3.1.157 [H]
Molecular weight: Translated: 26966; Mature: 26835
Theoretical pI: Translated: 6.40; Mature: 6.40
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 4.5 %Met (Translated Protein) 4.9 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 4.1 %Met (Mature Protein) 4.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTIKNAMVLAAGLGTRMRPITDTIPKPLVKIAGKPMIDYALDALVEAGAETIVVNVHHHA CCCCCCEEEEECCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCEEEEEEHHHH EQMISHLGHRTDAEILISDERTQLMNSGGGLAKGLKLLKPGPVFVMNADLFWIGERLNAV HHHHHHHCCCCCCEEEEECHHHHHHHCCCCHHHHHHHCCCCCEEEEECCEEEHHHHHHHH SNLRKLAQFLDPARMDMALLCVDMDRTTGHNGKRDFNLAGEGKLTRYRDGDANPVVYAGA HHHHHHHHHHCHHHCCEEEEEEECCCCCCCCCCCCCCCCCCCCEEEECCCCCCCEEEEEH IAMDSRLLDDAPADAFNLNIYFDRAIEKDRLFGLSLDGHWITVGTPDAIDDAESIIRQFR HHHCCHHHCCCCCCEEEEEEEEECCCCCCCEEEEEECCCEEEECCCCCHHHHHHHHHHHH EKRFA HHCCC >Mature Secondary Structure TIKNAMVLAAGLGTRMRPITDTIPKPLVKIAGKPMIDYALDALVEAGAETIVVNVHHHA CCCCCEEEEECCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCEEEEEEHHHH EQMISHLGHRTDAEILISDERTQLMNSGGGLAKGLKLLKPGPVFVMNADLFWIGERLNAV HHHHHHHCCCCCCEEEEECHHHHHHHCCCCHHHHHHHCCCCCEEEEECCEEEHHHHHHHH SNLRKLAQFLDPARMDMALLCVDMDRTTGHNGKRDFNLAGEGKLTRYRDGDANPVVYAGA HHHHHHHHHHCHHHCCEEEEEEECCCCCCCCCCCCCCCCCCCCEEEECCCCCCCEEEEEH IAMDSRLLDDAPADAFNLNIYFDRAIEKDRLFGLSLDGHWITVGTPDAIDDAESIIRQFR HHHCCHHHCCCCCCEEEEEEEEECCCCCCCEEEEEECCCEEEECCCCCHHHHHHHHHHHH EKRFA HHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA