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The map label for this gene is depA

Identifier: 159184124

GI number: 159184124

Start: 12339

End: 13535

Strand: Direct

Name: depA

Synonym: Atu0015

Alternate gene names: NA

Gene position: 12339-13535 (Clockwise)

Preceding gene: 15887373

Following gene: 15887375

Centisome position: 0.43

GC content: 58.81

Gene sequence:

>1197_bases
ATGGCGCCGCTGCGTGCCGGCGCGGACATGATGCGCCAGGCCTGCAACAATCCTCTCAATCCGCTGTCCAGCACCGCTTT
CGGCAGAAGCCTCGATGCCGGTTTCGAGGTTTTCGAACGTCTGACGCGCCGTTACGTCAAGCCGGAATTCGACCTCGGCT
CCACGAGCGTCGATGGCCAGACCGTTGTTGTCACTGACGAGACCGTCTGGTCGCGCCCGTTCTGCAGCCTTGTTCATTTT
AACCGCGACCTGGAGCCGACCCGCAAGCCGGATCCGAAAGTCTTGCTCGTCGCGCCGATGTCCGGCCACTATGCGACTCT
GCTGCGCGGGACGGTGGAAGCCCTGTTGCCCTCGGCCGATATTTACATCACCGATTGGGCCGATGCCCGTATCGTACCGG
CAACTGAGGGAACCTTCGATCTCGACGACTATATTGACTATGTCATCGAAATGCTGCGGCATATCGGCCCCGGCGCCCAT
GTGGTCGCCGTCTGCCAGCCATCCGTGCCGGTTCTGGCTGCCGTTTCCCTCATGGAGGCGGATGGCGATACGTTTGCGCC
GGCCTCCATGACGCTGATGGGCGGACCGATCGATACGCGCATCAACCCCACCGCCGTCAACGGTCTTGCCACGGCCAAGC
CGATCGAATGGTTTCGCGACAATGTCGTCATGCAGGTGCCGTGGCCGCAGCCGGCTTTCGGGCGCTATGTCTATCCAGGT
TTCTTGCAGCTGTCGGGTTTCATGTCCATGAACCTCGACAAGCACATGACGGCGCATAAGGATTTTTACCTGAACCTGGT
CAAGAATGACGGCGATTCCGCCGAAAAACACCGCGAATTTTACGATGAATATCTTGCTGTCATGGACCTGACGGCGGAAT
TTTATCTGCAGACGGTGGAAACCGTCTTCATCGACCATGCGCTTCCGAAAGGCAATATGCTGCACCGGGGCAGGGCGGTT
GATCCTACCGCGATCCACAATGTCGCGTTATTCACGGTCGAAGGCGAGAATGACGATATCTCCGGTGTCGGCCAGACGAA
GGCTGCACATGATCTTTGCCGGAACATCCCTGAAGACAAGCGCGCCCACTACATGCAGCCGGATGTGGGGCACTATGGCG
TCTTCAACGGTTCGCGCTTCCGCAAGGAAATCGTGCCGCGCATGCTGGATTTCATCGGCAAACACCAGATGGCCTAA

Upstream 100 bases:

>100_bases
TTGTGCACCTGCGAAAAGCTGCTATGGTCAGAAAAAGAGCGTGATCGCGAGGGAGGCGTCATCAGTGTTCTACCACCTCT
ATGAAATGAACCATGCGGCC

Downstream 100 bases:

>100_bases
GCGTGAAACGGCAGGTGGTGCCGCGCATTTGCATGGCCAAGCGATGGACGAATCGGTTATGAAGGCTTCATGTTTTCGCT
CCTCAGAAAATCCCTGAAGT

Product: intracellular PHB depolymerase

Products: NA

Alternate protein names: Intracellular PHB Depolymerase; Polyhydroxyalkanoate Depolymerase; Poly-Beta-Hydroxyalkanoate Depolymerase; PHB Depolymerase; PHB De-Polymerase Domain-Containing Protein; Intracellular Polyhydroxyalkanoate Depolymerase; Polyhydroxyalkanoate Depolymerase Intracellular Subfamily; Intracellular Poly(3-Hydroxybutyrate) Depolymerase; Poly[D(-)-3-Hydroxybutyrate] Depolymerase; Poly(3-Hydroxyalkanoate) Depolymerase; Poly(3-Hydroxybutyrate) Depolymerase; Intracellular PHB Depolymerase Protein; Poly-Beta-Hydroxyalkanoate Depolymerase Protein; Poly[D(-)-3-Hydroxyalkanoate] Depolymerase; Poly-Beta-Hydroxybutyrate Depolymerase; Poly-Beta-Hydroxyalkanoate Depolymerase-Like Protein; PHB De-Polymerase Domain Protein; PHB De-Polymerase; Intracellular Poly[D(-)-3-Hydroxybutyrate] Depolymerase; Poly[D(-)-3-Hydroxybutyrate](Phb) Depolymerase; Poly(3-Hydroxyalkanoate)Synthetase; Poly-Beta-Hydroxyalkanoate/Butyrate Depolymerase; Polyhydroxybutanoate Depolymerase; Alpha/Beta Hydrolase Fold; Alpha/Beta Hydrolase Fold Protein

Number of amino acids: Translated: 398; Mature: 397

Protein sequence:

>398_residues
MAPLRAGADMMRQACNNPLNPLSSTAFGRSLDAGFEVFERLTRRYVKPEFDLGSTSVDGQTVVVTDETVWSRPFCSLVHF
NRDLEPTRKPDPKVLLVAPMSGHYATLLRGTVEALLPSADIYITDWADARIVPATEGTFDLDDYIDYVIEMLRHIGPGAH
VVAVCQPSVPVLAAVSLMEADGDTFAPASMTLMGGPIDTRINPTAVNGLATAKPIEWFRDNVVMQVPWPQPAFGRYVYPG
FLQLSGFMSMNLDKHMTAHKDFYLNLVKNDGDSAEKHREFYDEYLAVMDLTAEFYLQTVETVFIDHALPKGNMLHRGRAV
DPTAIHNVALFTVEGENDDISGVGQTKAAHDLCRNIPEDKRAHYMQPDVGHYGVFNGSRFRKEIVPRMLDFIGKHQMA

Sequences:

>Translated_398_residues
MAPLRAGADMMRQACNNPLNPLSSTAFGRSLDAGFEVFERLTRRYVKPEFDLGSTSVDGQTVVVTDETVWSRPFCSLVHF
NRDLEPTRKPDPKVLLVAPMSGHYATLLRGTVEALLPSADIYITDWADARIVPATEGTFDLDDYIDYVIEMLRHIGPGAH
VVAVCQPSVPVLAAVSLMEADGDTFAPASMTLMGGPIDTRINPTAVNGLATAKPIEWFRDNVVMQVPWPQPAFGRYVYPG
FLQLSGFMSMNLDKHMTAHKDFYLNLVKNDGDSAEKHREFYDEYLAVMDLTAEFYLQTVETVFIDHALPKGNMLHRGRAV
DPTAIHNVALFTVEGENDDISGVGQTKAAHDLCRNIPEDKRAHYMQPDVGHYGVFNGSRFRKEIVPRMLDFIGKHQMA
>Mature_397_residues
APLRAGADMMRQACNNPLNPLSSTAFGRSLDAGFEVFERLTRRYVKPEFDLGSTSVDGQTVVVTDETVWSRPFCSLVHFN
RDLEPTRKPDPKVLLVAPMSGHYATLLRGTVEALLPSADIYITDWADARIVPATEGTFDLDDYIDYVIEMLRHIGPGAHV
VAVCQPSVPVLAAVSLMEADGDTFAPASMTLMGGPIDTRINPTAVNGLATAKPIEWFRDNVVMQVPWPQPAFGRYVYPGF
LQLSGFMSMNLDKHMTAHKDFYLNLVKNDGDSAEKHREFYDEYLAVMDLTAEFYLQTVETVFIDHALPKGNMLHRGRAVD
PTAIHNVALFTVEGENDDISGVGQTKAAHDLCRNIPEDKRAHYMQPDVGHYGVFNGSRFRKEIVPRMLDFIGKHQMA

Specific function: Unknown

COG id: COG4553

COG function: function code I; Poly-beta-hydroxyalkanoate depolymerase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 44308; Mature: 44177

Theoretical pI: Translated: 5.38; Mature: 5.38

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAPLRAGADMMRQACNNPLNPLSSTAFGRSLDAGFEVFERLTRRYVKPEFDLGSTSVDGQ
CCCCCCCHHHHHHHHCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCE
TVVVTDETVWSRPFCSLVHFNRDLEPTRKPDPKVLLVAPMSGHYATLLRGTVEALLPSAD
EEEEECCHHHCCHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCC
IYITDWADARIVPATEGTFDLDDYIDYVIEMLRHIGPGAHVVAVCQPSVPVLAAVSLMEA
EEEEECCCCEEEECCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHC
DGDTFAPASMTLMGGPIDTRINPTAVNGLATAKPIEWFRDNVVMQVPWPQPAFGRYVYPG
CCCCCCCCEEEEECCCCCCCCCCHHHCCCCCCCHHHHHHCCEEEEECCCCCCCCCCCCCC
FLQLSGFMSMNLDKHMTAHKDFYLNLVKNDGDSAEKHREFYDEYLAVMDLTAEFYLQTVE
HHHHHHHHHCCCHHHHHHCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TVFIDHALPKGNMLHRGRAVDPTAIHNVALFTVEGENDDISGVGQTKAAHDLCRNIPEDK
HHHHHHCCCCCCCCCCCCCCCCHHCCEEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCHH
RAHYMQPDVGHYGVFNGSRFRKEIVPRMLDFIGKHQMA
HHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
APLRAGADMMRQACNNPLNPLSSTAFGRSLDAGFEVFERLTRRYVKPEFDLGSTSVDGQ
CCCCCCHHHHHHHHCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCE
TVVVTDETVWSRPFCSLVHFNRDLEPTRKPDPKVLLVAPMSGHYATLLRGTVEALLPSAD
EEEEECCHHHCCHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCC
IYITDWADARIVPATEGTFDLDDYIDYVIEMLRHIGPGAHVVAVCQPSVPVLAAVSLMEA
EEEEECCCCEEEECCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHC
DGDTFAPASMTLMGGPIDTRINPTAVNGLATAKPIEWFRDNVVMQVPWPQPAFGRYVYPG
CCCCCCCCEEEEECCCCCCCCCCHHHCCCCCCCHHHHHHCCEEEEECCCCCCCCCCCCCC
FLQLSGFMSMNLDKHMTAHKDFYLNLVKNDGDSAEKHREFYDEYLAVMDLTAEFYLQTVE
HHHHHHHHHCCCHHHHHHCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TVFIDHALPKGNMLHRGRAVDPTAIHNVALFTVEGENDDISGVGQTKAAHDLCRNIPEDK
HHHHHHCCCCCCCCCCCCCCCCHHCCEEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCHH
RAHYMQPDVGHYGVFNGSRFRKEIVPRMLDFIGKHQMA
HHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA