Definition | Agrobacterium tumefaciens str. C58 chromosome circular, complete sequence. |
---|---|
Accession | NC_003062 |
Length | 2,841,580 |
Click here to switch to the map view.
The map label for this gene is cobI [H]
Identifier: 15890048
GI number: 15890048
Start: 2802228
End: 2802995
Strand: Reverse
Name: cobI [H]
Synonym: Atu2801
Alternate gene names: 15890048
Gene position: 2802995-2802228 (Counterclockwise)
Preceding gene: 15890049
Following gene: 15890047
Centisome position: 98.64
GC content: 61.33
Gene sequence:
>768_bases GTGAGTGCTGCGCTTTTTGAACATGCCAAGGGTAAGCTTGTCGGCGTCGGCACTGGTCCGGGTGATCCTGAGCTGCTGAC GCTGAAAGCCGTGCGCGCCATCGAAAATGCCGATGTTCTCGCCTTTTTCTGCAAGAAGGGCAGCGCCGGCAATGGCCGTG GCATTGTCGAAGCCTTTATTCGACCCGGCACGCTTGAAATGCCGCTGGTCTATCCCGTCACTGTCGAAAGCGACAAGAAC GGCGAAGATTATCGCGGCGCGATTGCCGCGTTCTTTGATCAGTCCGCGAAGGATATTGCCGTGCATCTCGATGCCGGGCG CAATGTGGCCGTGCTCTCTGAAGGCGATCCGCTGTTTTACGGCTCCTATATGCATCTCCATCTGCGGCTTGCGCCGTCCT ATGAGGCGGAAGTCGTTGCCGGCATCACCGCCATGTCCGGTTGCTGGTCCATGGCCGGCCTGCCGCTCGTGCAGGGCGAC GATATTCTGAGCGTGCTTCCCGGCACGCTGGCAGAAGAGGTGCTCGCGGAGCGACTTTCCGGCACGGATGGCGCCGTGAT CATGAAGGTCGGCCGCAATCTGCCGAAAATCCGCCGCGCGCTGGAAGTGGCCGGCAAGCTCGAAGAGGCGCTGTATGTCG AGCGCGGCACCATGGCGAACAGCCACGCGGTGCGGCTCATCGAGCGTGATGCCTCGCCCGCGCCCTATTTTTCGCTGGTT CTGGTACCAGGCTGGAAAACCAGGCCAGCAGGGAGCGAAGGGTCATGA
Upstream 100 bases:
>100_bases AGGCAAGTGCGCTTGGCATTCCCTATGCTATCGTCAAGGGACGTTTGGGCGGCTCGGCCATGACGGCCGCCGCCATCAAC GCGGTTGCGAGGGCGGGCCT
Downstream 100 bases:
>100_bases CCGGCAAACTCGTTGTTATCGGCCTTGGTCCCGGCAACGGAAATCAGGTGACGCCTGAGGCGCTGGCCGCTGTCGAGTCA TCGGAAGATTTTTTCGGTTA
Product: precorrin-2 C(20)-methyltransferase
Products: NA
Alternate protein names: S-adenosyl-L-methionine--precorrin-2 methyltransferase; SP2MT [H]
Number of amino acids: Translated: 255; Mature: 254
Protein sequence:
>255_residues MSAALFEHAKGKLVGVGTGPGDPELLTLKAVRAIENADVLAFFCKKGSAGNGRGIVEAFIRPGTLEMPLVYPVTVESDKN GEDYRGAIAAFFDQSAKDIAVHLDAGRNVAVLSEGDPLFYGSYMHLHLRLAPSYEAEVVAGITAMSGCWSMAGLPLVQGD DILSVLPGTLAEEVLAERLSGTDGAVIMKVGRNLPKIRRALEVAGKLEEALYVERGTMANSHAVRLIERDASPAPYFSLV LVPGWKTRPAGSEGS
Sequences:
>Translated_255_residues MSAALFEHAKGKLVGVGTGPGDPELLTLKAVRAIENADVLAFFCKKGSAGNGRGIVEAFIRPGTLEMPLVYPVTVESDKN GEDYRGAIAAFFDQSAKDIAVHLDAGRNVAVLSEGDPLFYGSYMHLHLRLAPSYEAEVVAGITAMSGCWSMAGLPLVQGD DILSVLPGTLAEEVLAERLSGTDGAVIMKVGRNLPKIRRALEVAGKLEEALYVERGTMANSHAVRLIERDASPAPYFSLV LVPGWKTRPAGSEGS >Mature_254_residues SAALFEHAKGKLVGVGTGPGDPELLTLKAVRAIENADVLAFFCKKGSAGNGRGIVEAFIRPGTLEMPLVYPVTVESDKNG EDYRGAIAAFFDQSAKDIAVHLDAGRNVAVLSEGDPLFYGSYMHLHLRLAPSYEAEVVAGITAMSGCWSMAGLPLVQGDD ILSVLPGTLAEEVLAERLSGTDGAVIMKVGRNLPKIRRALEVAGKLEEALYVERGTMANSHAVRLIERDASPAPYFSLVL VPGWKTRPAGSEGS
Specific function: Methylates precorrin-2 at the C-20 position to produce precorrin-3A [H]
COG id: COG2243
COG function: function code H; Precorrin-2 methylase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the precorrin methyltransferase family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000878 - InterPro: IPR014777 - InterPro: IPR012382 - InterPro: IPR006364 - InterPro: IPR003043 [H]
Pfam domain/function: PF00590 TP_methylase [H]
EC number: =2.1.1.130 [H]
Molecular weight: Translated: 27007; Mature: 26876
Theoretical pI: Translated: 5.38; Mature: 5.38
Prosite motif: PS00839 SUMT_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSAALFEHAKGKLVGVGTGPGDPELLTLKAVRAIENADVLAFFCKKGSAGNGRGIVEAFI CCCCHHHCCCCCEEEEECCCCCCCEEEHHHHHHHCCCCEEEEEECCCCCCCCCCHHEEEE RPGTLEMPLVYPVTVESDKNGEDYRGAIAAFFDQSAKDIAVHLDAGRNVAVLSEGDPLFY CCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHCCCCCEEEEEEECCCCEEEEECCCCEEE GSYMHLHLRLAPSYEAEVVAGITAMSGCWSMAGLPLVQGDDILSVLPGTLAEEVLAERLS EEEEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEECCCCHHHHCCHHHHHHHHHHHHC GTDGAVIMKVGRNLPKIRRALEVAGKLEEALYVERGTMANSHAVRLIERDASPAPYFSLV CCCCEEEEECCCCCHHHHHHHHHHHHHHHHHEEECCCCCCCCEEEEEECCCCCCCEEEEE LVPGWKTRPAGSEGS EECCCCCCCCCCCCC >Mature Secondary Structure SAALFEHAKGKLVGVGTGPGDPELLTLKAVRAIENADVLAFFCKKGSAGNGRGIVEAFI CCCHHHCCCCCEEEEECCCCCCCEEEHHHHHHHCCCCEEEEEECCCCCCCCCCHHEEEE RPGTLEMPLVYPVTVESDKNGEDYRGAIAAFFDQSAKDIAVHLDAGRNVAVLSEGDPLFY CCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHCCCCCEEEEEEECCCCEEEEECCCCEEE GSYMHLHLRLAPSYEAEVVAGITAMSGCWSMAGLPLVQGDDILSVLPGTLAEEVLAERLS EEEEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEECCCCHHHHCCHHHHHHHHHHHHC GTDGAVIMKVGRNLPKIRRALEVAGKLEEALYVERGTMANSHAVRLIERDASPAPYFSLV CCCCEEEEECCCCCHHHHHHHHHHHHHHHHHEEECCCCCCCCEEEEEECCCCCCCEEEEE LVPGWKTRPAGSEGS EECCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 2211521 [H]