Definition | Agrobacterium tumefaciens str. C58 chromosome circular, complete sequence. |
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Accession | NC_003062 |
Length | 2,841,580 |
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The map label for this gene is yibQ [C]
Identifier: 15890022
GI number: 15890022
Start: 2777588
End: 2778787
Strand: Reverse
Name: yibQ [C]
Synonym: Atu2773
Alternate gene names: 15890022
Gene position: 2778787-2777588 (Counterclockwise)
Preceding gene: 159185374
Following gene: 159185373
Centisome position: 97.79
GC content: 62.08
Gene sequence:
>1200_bases TTGTCTTCGGACCTGCGAAAACCGCTTCTGGGTCGTCAGAAAAAAAGCGCCGGTATCAACCGGCGCTTTTCCGTCATTAT GCTTCTGTCTGTGCTTGCCGTTCTGTCGATCGGTGGCCTGTCCATCTACACGGCGCTGTCGCCCGGTAATCTGCAGAAAA CGGCGGCCGGACCGGATGGACAGCCGCAGCTTGCCGAAAAGGCCCCTGAAAAAGCACAGGTCGATGTGCCTGCTGCCGGT GACACCGCCGGGCTGCAGCCGCAAAGCGGTCGCTCCGGCGCCAATATCAATCGGGCGACCTTGCCCGATGGCAATGTCGT ATCGGTTTATTCTCCCCGGCCCCGTGACAGTGACGGCCCTGTGCTGATGAGCGGCCAGACCTATGGCCAGGATCCGCGCA TGGCGACGCGGCCCAATGAGGAGCTGCTGGAGGAAACCGCCTTCGGTCAATTGCCCGTTGTCGGTGCGGATGGCCTGCGG CCGATGGAGCAATATGCCCGGCCATGGTCCGGCGCACGCGGCACCCGGGTGGCAATTGTGGTCGGCGGTCTCGGTCTCAG CCAGACGGGTTCGCAAAAGGCGATCCGGGATCTGCCGCCGGAGGTAACGCTCGGTTTTGCCGCCAGCGGCAACAGCCTGC AGCGCTGGATGCAGGACGCGCGCCGTGAGGGGCATGAGATCCTTCTGCAGATACCGCTGGAACCCTTCGGTTATCCCGGC ACCAATCCCGGTCCTGACACCTTGCTGGCGGGCGACCCTGCCAAGGTCAATATTGACCGGCTGCATCGCTCCATGGCGAA AATCACCAATTATACCGGCGTCATGAATTATCTCGGCGGGCGTTTCCTGGCCGAACAGTCCGCGCTGGAGCCGGTCATGC GAGATATCGGCAAACGTGGATTGCTGTTTCTGGATGATGGCTCCTCGGCGCAGTCGCTGAGCGGCGGGATTGCGAAAGCC ATTTCCGCGCCGCAGGGTTTCGCGGATGTTCTGCTTGACGGTGAAGTCACCGAAGCCTCCATCCTGCGTAAGTTGGACGA TCTGGAACGGATTGCGCGCCGCAACGGCCAGGCGATCGGTGTGGCCTCGGCATTCGATGAAAGCATTGCGGCGATCTCGA AATGGTCACGCGAGGCTGGTGGGCGCGGCATCGAGATTGTCGGCGTTTCTGCGCTTGTTTCCGGGCAGGCGGGGCAGTAA
Upstream 100 bases:
>100_bases CGCCGAACCCGGACAAGGCTGTGGTCAACAAGCAGTAAGATGATGCGCTGGTTCGCCGGCGCGTTCTCTCCATTGCCCAA CCATTTGGACGGACTGTTTA
Downstream 100 bases:
>100_bases ACCTTGCCTGCGTCCATTTCCGGCGCTGAGACAGTGCGGGTTTCCCATGACAATCAAAGCAGAAGATTTGCCTTACCGTC CCTGTGCGGGAATAATGGTT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 399; Mature: 398
Protein sequence:
>399_residues MSSDLRKPLLGRQKKSAGINRRFSVIMLLSVLAVLSIGGLSIYTALSPGNLQKTAAGPDGQPQLAEKAPEKAQVDVPAAG DTAGLQPQSGRSGANINRATLPDGNVVSVYSPRPRDSDGPVLMSGQTYGQDPRMATRPNEELLEETAFGQLPVVGADGLR PMEQYARPWSGARGTRVAIVVGGLGLSQTGSQKAIRDLPPEVTLGFAASGNSLQRWMQDARREGHEILLQIPLEPFGYPG TNPGPDTLLAGDPAKVNIDRLHRSMAKITNYTGVMNYLGGRFLAEQSALEPVMRDIGKRGLLFLDDGSSAQSLSGGIAKA ISAPQGFADVLLDGEVTEASILRKLDDLERIARRNGQAIGVASAFDESIAAISKWSREAGGRGIEIVGVSALVSGQAGQ
Sequences:
>Translated_399_residues MSSDLRKPLLGRQKKSAGINRRFSVIMLLSVLAVLSIGGLSIYTALSPGNLQKTAAGPDGQPQLAEKAPEKAQVDVPAAG DTAGLQPQSGRSGANINRATLPDGNVVSVYSPRPRDSDGPVLMSGQTYGQDPRMATRPNEELLEETAFGQLPVVGADGLR PMEQYARPWSGARGTRVAIVVGGLGLSQTGSQKAIRDLPPEVTLGFAASGNSLQRWMQDARREGHEILLQIPLEPFGYPG TNPGPDTLLAGDPAKVNIDRLHRSMAKITNYTGVMNYLGGRFLAEQSALEPVMRDIGKRGLLFLDDGSSAQSLSGGIAKA ISAPQGFADVLLDGEVTEASILRKLDDLERIARRNGQAIGVASAFDESIAAISKWSREAGGRGIEIVGVSALVSGQAGQ >Mature_398_residues SSDLRKPLLGRQKKSAGINRRFSVIMLLSVLAVLSIGGLSIYTALSPGNLQKTAAGPDGQPQLAEKAPEKAQVDVPAAGD TAGLQPQSGRSGANINRATLPDGNVVSVYSPRPRDSDGPVLMSGQTYGQDPRMATRPNEELLEETAFGQLPVVGADGLRP MEQYARPWSGARGTRVAIVVGGLGLSQTGSQKAIRDLPPEVTLGFAASGNSLQRWMQDARREGHEILLQIPLEPFGYPGT NPGPDTLLAGDPAKVNIDRLHRSMAKITNYTGVMNYLGGRFLAEQSALEPVMRDIGKRGLLFLDDGSSAQSLSGGIAKAI SAPQGFADVLLDGEVTEASILRKLDDLERIARRNGQAIGVASAFDESIAAISKWSREAGGRGIEIVGVSALVSGQAGQ
Specific function: Unknown
COG id: COG2861
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 41996; Mature: 41865
Theoretical pI: Translated: 8.75; Mature: 8.75
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSSDLRKPLLGRQKKSAGINRRFSVIMLLSVLAVLSIGGLSIYTALSPGNLQKTAAGPDG CCCHHHHHHHCCCHHHCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCC QPQLAEKAPEKAQVDVPAAGDTAGLQPQSGRSGANINRATLPDGNVVSVYSPRPRDSDGP CCHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCC VLMSGQTYGQDPRMATRPNEELLEETAFGQLPVVGADGLRPMEQYARPWSGARGTRVAIV EEECCCCCCCCCCCCCCCCHHHHHHHHCCCCCEECCCCCCHHHHHCCCCCCCCCCEEEEE VGGLGLSQTGSQKAIRDLPPEVTLGFAASGNSLQRWMQDARREGHEILLQIPLEPFGYPG EECCCCCCCCCHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCC TNPGPDTLLAGDPAKVNIDRLHRSMAKITNYTGVMNYLGGRFLAEQSALEPVMRDIGKRG CCCCCCCEECCCCCEEEHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCC LLFLDDGSSAQSLSGGIAKAISAPQGFADVLLDGEVTEASILRKLDDLERIARRNGQAIG EEEEECCCCHHHHHHHHHHHHCCCCCHHHHEECCCCHHHHHHHHHHHHHHHHHHCCCEEE VASAFDESIAAISKWSREAGGRGIEIVGVSALVSGQAGQ EHHHHHHHHHHHHHHHHHHCCCCEEEEEEEHEECCCCCC >Mature Secondary Structure SSDLRKPLLGRQKKSAGINRRFSVIMLLSVLAVLSIGGLSIYTALSPGNLQKTAAGPDG CCHHHHHHHCCCHHHCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCC QPQLAEKAPEKAQVDVPAAGDTAGLQPQSGRSGANINRATLPDGNVVSVYSPRPRDSDGP CCHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCC VLMSGQTYGQDPRMATRPNEELLEETAFGQLPVVGADGLRPMEQYARPWSGARGTRVAIV EEECCCCCCCCCCCCCCCCHHHHHHHHCCCCCEECCCCCCHHHHHCCCCCCCCCCEEEEE VGGLGLSQTGSQKAIRDLPPEVTLGFAASGNSLQRWMQDARREGHEILLQIPLEPFGYPG EECCCCCCCCCHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCC TNPGPDTLLAGDPAKVNIDRLHRSMAKITNYTGVMNYLGGRFLAEQSALEPVMRDIGKRG CCCCCCCEECCCCCEEEHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCC LLFLDDGSSAQSLSGGIAKAISAPQGFADVLLDGEVTEASILRKLDDLERIARRNGQAIG EEEEECCCCHHHHHHHHHHHHCCCCCHHHHEECCCCHHHHHHHHHHHHHHHHHHCCCEEE VASAFDESIAAISKWSREAGGRGIEIVGVSALVSGQAGQ EHHHHHHHHHHHHHHHHHHCCCCEEEEEEEHEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA