Definition | Agrobacterium tumefaciens str. C58 chromosome circular, complete sequence. |
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Accession | NC_003062 |
Length | 2,841,580 |
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The map label for this gene is yxiO [H]
Identifier: 15890016
GI number: 15890016
Start: 2771626
End: 2773002
Strand: Direct
Name: yxiO [H]
Synonym: Atu2767
Alternate gene names: 15890016
Gene position: 2771626-2773002 (Clockwise)
Preceding gene: 15890015
Following gene: 15890018
Centisome position: 97.54
GC content: 59.04
Gene sequence:
>1377_bases ATGACTGTCCCCTCCCAGAACGCGGAAACAGTGGTTGCCAAACGCGGCATTTGGGGCTGGGTCATGTTCGACTGGGCGGC GCAGCCCTTCTTCACTGTTGTCACCACCTTCATTTTCGGCCCCTATTTCGTCGCCCGCCTCACCGATGATCCGATCTCGG CGCAGGCGACGTGGAGCAACATGGCGACGGTTTCTTCGATCATCATCGCCCTCTTCTCCCCCATCCTCGGCTCCATCGCC GATCAATCCGGCGCACGCAAACCGTGGATCGCCTTTTTTGCCGTCATCAAGATCGTCAGCCTGTTTTTCCTATGGTTTGC AGCGCCGGGGTCGCCGATCATCCTGCCCATCATCTGCATGATCCTCGCTTCCATCGCCGCGGAATTCTCGATTGTCTTTA ACGATTCCATGATGCCGCGACTGACCAATCCGCAAAATGTCGGACGCATCTCCAATCTTGCCTGGGGGCTCGGTTATCTT GGTGGCATGGTGGTGCTGATTGCCGTGGTGACGCTTCTCGCCTCCAACCCGCAGACGGGGCTGACGATTGCCGGCGTCAA ACCGCTTTTCGGTCTCGACCCCGCCACCGGCGAGGATGCCAGAATAACCGGACCGCTTGCCGCCCTCTGGTATCTCGTCT TCATTCTGCCGATGTTCCTGTTGACCTCCGATGCCGAAAAGGGTCTGCCCTTTGCAGCCGCGATCCGCTCTGGACTTGGA GAACTGAAGATTACGCTCCGCGAACTCCGCTACCGCCCCGTGCTTTTGCGATTTCTGATCGCGCGCATGCTTTATCAGGA TGGTGTCAATGGCGTAATCATCCTCGGTGGGGCCTTCGCTGCCGGCATGTTCGGCTGGGCGACGATGGAAATCGGTCTCT TCGGCATCCTGCTCAATGTCGTCGCCATCGCAGGCTGCTTTGCTGCCGGACGGCTCGATCAGAAACTCGGCTCGCGCATC ACTATCCTCATCAGTCTGGCGCTGCTGCTGCTCGCAACGGTCGGCATCGTCTCGACGGAAAAGGGCTCCACCCTGTTCGG CTGGATACAATTATCGACAGCGGATAATGACCGCATCTTCGCGACAGGCGCGGAAAAGGCCTATCTGCTCTATGGTGTGC TGATCGGCCTTGCCTTCGGGCCCGTCCAGGCCTCGTCGCGCTCTTATCTCGCCCGCAATATCACTGTGGCAGAAGCGGGC CGTTATTTCGGCATCTATGCGCTTTCCGGGCGCGCCACGAGTTTCATGGCAACGCTGTCGTTTTCCATAGCAACCACTAT AAGCGGCTCCGCCCATATCGGCATGGCGACGCTCATCGTGTTTCTGGGGGCTGGGTTCCTGCTGTTGCTGCGCGTGCCGG AAAGAACGGCAGGCTGA
Upstream 100 bases:
>100_bases CGGAATCTCAAAAACGTCATCCGGGCCATCGACCCGGGTGGCGACCAACGACGTGAACGGCCAACATCACGAACTTCCCG ATTATCCGATAGGACGATGA
Downstream 100 bases:
>100_bases AAGTCTGGAGCAGCAGCCGATGCGGTTGTTCAATCCAGCATCGGCCCGAAAGACAGGATCAGAGCTGGTCGAGTTTTTGC TGCAATGCGCGCAGCTGCGC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 458; Mature: 457
Protein sequence:
>458_residues MTVPSQNAETVVAKRGIWGWVMFDWAAQPFFTVVTTFIFGPYFVARLTDDPISAQATWSNMATVSSIIIALFSPILGSIA DQSGARKPWIAFFAVIKIVSLFFLWFAAPGSPIILPIICMILASIAAEFSIVFNDSMMPRLTNPQNVGRISNLAWGLGYL GGMVVLIAVVTLLASNPQTGLTIAGVKPLFGLDPATGEDARITGPLAALWYLVFILPMFLLTSDAEKGLPFAAAIRSGLG ELKITLRELRYRPVLLRFLIARMLYQDGVNGVIILGGAFAAGMFGWATMEIGLFGILLNVVAIAGCFAAGRLDQKLGSRI TILISLALLLLATVGIVSTEKGSTLFGWIQLSTADNDRIFATGAEKAYLLYGVLIGLAFGPVQASSRSYLARNITVAEAG RYFGIYALSGRATSFMATLSFSIATTISGSAHIGMATLIVFLGAGFLLLLRVPERTAG
Sequences:
>Translated_458_residues MTVPSQNAETVVAKRGIWGWVMFDWAAQPFFTVVTTFIFGPYFVARLTDDPISAQATWSNMATVSSIIIALFSPILGSIA DQSGARKPWIAFFAVIKIVSLFFLWFAAPGSPIILPIICMILASIAAEFSIVFNDSMMPRLTNPQNVGRISNLAWGLGYL GGMVVLIAVVTLLASNPQTGLTIAGVKPLFGLDPATGEDARITGPLAALWYLVFILPMFLLTSDAEKGLPFAAAIRSGLG ELKITLRELRYRPVLLRFLIARMLYQDGVNGVIILGGAFAAGMFGWATMEIGLFGILLNVVAIAGCFAAGRLDQKLGSRI TILISLALLLLATVGIVSTEKGSTLFGWIQLSTADNDRIFATGAEKAYLLYGVLIGLAFGPVQASSRSYLARNITVAEAG RYFGIYALSGRATSFMATLSFSIATTISGSAHIGMATLIVFLGAGFLLLLRVPERTAG >Mature_457_residues TVPSQNAETVVAKRGIWGWVMFDWAAQPFFTVVTTFIFGPYFVARLTDDPISAQATWSNMATVSSIIIALFSPILGSIAD QSGARKPWIAFFAVIKIVSLFFLWFAAPGSPIILPIICMILASIAAEFSIVFNDSMMPRLTNPQNVGRISNLAWGLGYLG GMVVLIAVVTLLASNPQTGLTIAGVKPLFGLDPATGEDARITGPLAALWYLVFILPMFLLTSDAEKGLPFAAAIRSGLGE LKITLRELRYRPVLLRFLIARMLYQDGVNGVIILGGAFAAGMFGWATMEIGLFGILLNVVAIAGCFAAGRLDQKLGSRIT ILISLALLLLATVGIVSTEKGSTLFGWIQLSTADNDRIFATGAEKAYLLYGVLIGLAFGPVQASSRSYLARNITVAEAGR YFGIYALSGRATSFMATLSFSIATTISGSAHIGMATLIVFLGAGFLLLLRVPERTAG
Specific function: Unknown
COG id: COG2270
COG function: function code R; Permeases of the major facilitator superfamily
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Probable) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the major facilitator superfamily [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR020846 - InterPro: IPR016196 [H]
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 48889; Mature: 48758
Theoretical pI: Translated: 9.79; Mature: 9.79
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTVPSQNAETVVAKRGIWGWVMFDWAAQPFFTVVTTFIFGPYFVARLTDDPISAQATWSN CCCCCCCCCHHHHHCCCEEEEEEHHCCCHHHHHHHHHHHHHHHHEEECCCCCCCCCHHHH MATVSSIIIALFSPILGSIADQSGARKPWIAFFAVIKIVSLFFLWFAAPGSPIILPIICM HHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH ILASIAAEFSIVFNDSMMPRLTNPQNVGRISNLAWGLGYLGGMVVLIAVVTLLASNPQTG HHHHHHHHEEEEECCCCCCCCCCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC LTIAGVKPLFGLDPATGEDARITGPLAALWYLVFILPMFLLTSDAEKGLPFAAAIRSGLG EEEECCCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCHH ELKITLRELRYRPVLLRFLIARMLYQDGVNGVIILGGAFAAGMFGWATMEIGLFGILLNV HHHHHHHHHHCHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHH VAIAGCFAAGRLDQKLGSRITILISLALLLLATVGIVSTEKGSTLFGWIQLSTADNDRIF HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHEECCCCCEEEEEEEEEECCCCEEE ATGAEKAYLLYGVLIGLAFGPVQASSRSYLARNITVAEAGRYFGIYALSGRATSFMATLS EECCCHHHHHHHHHHHHHCCCCCCCCCHHHHHCCCHHHCCCEEEEEEECCCCHHHHHHHH FSIATTISGSAHIGMATLIVFLGAGFLLLLRVPERTAG HHHHEEECCCCHHHHHHHHHHHHCCHHEEEECCCCCCC >Mature Secondary Structure TVPSQNAETVVAKRGIWGWVMFDWAAQPFFTVVTTFIFGPYFVARLTDDPISAQATWSN CCCCCCCCHHHHHCCCEEEEEEHHCCCHHHHHHHHHHHHHHHHEEECCCCCCCCCHHHH MATVSSIIIALFSPILGSIADQSGARKPWIAFFAVIKIVSLFFLWFAAPGSPIILPIICM HHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH ILASIAAEFSIVFNDSMMPRLTNPQNVGRISNLAWGLGYLGGMVVLIAVVTLLASNPQTG HHHHHHHHEEEEECCCCCCCCCCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC LTIAGVKPLFGLDPATGEDARITGPLAALWYLVFILPMFLLTSDAEKGLPFAAAIRSGLG EEEECCCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCHH ELKITLRELRYRPVLLRFLIARMLYQDGVNGVIILGGAFAAGMFGWATMEIGLFGILLNV HHHHHHHHHHCHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHH VAIAGCFAAGRLDQKLGSRITILISLALLLLATVGIVSTEKGSTLFGWIQLSTADNDRIF HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHEECCCCCEEEEEEEEEECCCCEEE ATGAEKAYLLYGVLIGLAFGPVQASSRSYLARNITVAEAGRYFGIYALSGRATSFMATLS EECCCHHHHHHHHHHHHHCCCCCCCCCHHHHHCCCHHHCCCEEEEEEECCCCHHHHHHHH FSIATTISGSAHIGMATLIVFLGAGFLLLLRVPERTAG HHHHEEECCCCHHHHHHHHHHHHCCHHEEEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8969509; 9384377 [H]