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The map label for this gene is ydeB [H]

Identifier: 15890014

GI number: 15890014

Start: 2765656

End: 2766225

Strand: Reverse

Name: ydeB [H]

Synonym: Atu2765

Alternate gene names: 15890014

Gene position: 2766225-2765656 (Counterclockwise)

Preceding gene: 159185370

Following gene: 15890012

Centisome position: 97.35

GC content: 55.61

Gene sequence:

>570_bases
ATGACGACCCAGCAGAAGAAATCTCCAGCACATCACGGCTTTAAAACCGGTGAAGCGATTGTGTATCCCGCTCATGGTGT
CGGTACCATTTCTGCCATCGAGGAACAAGAAGTCGCCGGCATGAAGCTTGAGCTTTTTGTCATCGATTTCGAAAAAGACA
AGATGCGTCTTAAGGTTCCCGTCGCCAAAGCCGTCAGCATCGGCATGCGCAAGCTTTCCGAAGGCGATTTTGTCGAGCGG
GCGCTGAAAGTGGTGCAGGGCAAGGCGCGTGTGAAGCGGACCATGTGGTCGCGCCGCGCGCAGGAATATGATGCGAAGAT
CAATTCCGGCGATCTCATTGCGATTGCGGAAGTCGTACGCGATCTCTACCGTGCTGAAAACCAGCCGGAGCAGTCCTATT
CCGAGCGTCAGCTTTACGAAGCTGCTCTCGACCGCATGGCGCGCGAAATCGCCGCCGTCAACAAGATGTCCGAAACCGAG
GCTGTCCGCCTGGTGGAAGTCAACCTTGCCAAGGGCCCCAAGCGTGGCAAGACCGTTGAAGAGGATGATTCTCAGGACGA
AGCCGCTTAA

Upstream 100 bases:

>100_bases
GGACCAGTGCGGAGTCACCTGACGGTTCCCCCGTCTCATCAGGGCCTGACCGACCCAACCCCGGCATCCCCGGGTATGTA
ACAGGGAGTTTTTAGAACGA

Downstream 100 bases:

>100_bases
TCACGGCCTTTTCCTTCTAAAAAAACCCGCCTTGATGGCGGGTTTTTTGTTGCTTGCCTCGCTGCATGCACATCACAGGA
TACGGATTTTCGTTCCCTTG

Product: CarD family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 189; Mature: 188

Protein sequence:

>189_residues
MTTQQKKSPAHHGFKTGEAIVYPAHGVGTISAIEEQEVAGMKLELFVIDFEKDKMRLKVPVAKAVSIGMRKLSEGDFVER
ALKVVQGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLYRAENQPEQSYSERQLYEAALDRMAREIAAVNKMSETE
AVRLVEVNLAKGPKRGKTVEEDDSQDEAA

Sequences:

>Translated_189_residues
MTTQQKKSPAHHGFKTGEAIVYPAHGVGTISAIEEQEVAGMKLELFVIDFEKDKMRLKVPVAKAVSIGMRKLSEGDFVER
ALKVVQGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLYRAENQPEQSYSERQLYEAALDRMAREIAAVNKMSETE
AVRLVEVNLAKGPKRGKTVEEDDSQDEAA
>Mature_188_residues
TTQQKKSPAHHGFKTGEAIVYPAHGVGTISAIEEQEVAGMKLELFVIDFEKDKMRLKVPVAKAVSIGMRKLSEGDFVERA
LKVVQGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVRDLYRAENQPEQSYSERQLYEAALDRMAREIAAVNKMSETEA
VRLVEVNLAKGPKRGKTVEEDDSQDEAA

Specific function: Unknown

COG id: COG1329

COG function: function code K; Transcriptional regulators, similar to M. xanthus CarD

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003711 [H]

Pfam domain/function: PF02559 CarD_TRCF [H]

EC number: NA

Molecular weight: Translated: 21150; Mature: 21019

Theoretical pI: Translated: 7.76; Mature: 7.76

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTQQKKSPAHHGFKTGEAIVYPAHGVGTISAIEEQEVAGMKLELFVIDFEKDKMRLKVP
CCCCCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHCCEEEEEEEEEECCCCEEEECC
VAKAVSIGMRKLSEGDFVERALKVVQGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR
HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH
DLYRAENQPEQSYSERQLYEAALDRMAREIAAVNKMSETEAVRLVEVNLAKGPKRGKTVE
HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHEEEEEEECCCCCCCCCCCC
EDDSQDEAA
CCCCCCCCC
>Mature Secondary Structure 
TTQQKKSPAHHGFKTGEAIVYPAHGVGTISAIEEQEVAGMKLELFVIDFEKDKMRLKVP
CCCCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHCCEEEEEEEEEECCCCEEEECC
VAKAVSIGMRKLSEGDFVERALKVVQGKARVKRTMWSRRAQEYDAKINSGDLIAIAEVVR
HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH
DLYRAENQPEQSYSERQLYEAALDRMAREIAAVNKMSETEAVRLVEVNLAKGPKRGKTVE
HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHEEEEEEECCCCCCCCCCCC
EDDSQDEAA
CCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]