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The map label for this gene is yggS [C]

Identifier: 15889996

GI number: 15889996

Start: 2745254

End: 2745916

Strand: Reverse

Name: yggS [C]

Synonym: Atu2747

Alternate gene names: 15889996

Gene position: 2745916-2745254 (Counterclockwise)

Preceding gene: 159185361

Following gene: 159185358

Centisome position: 96.63

GC content: 60.03

Gene sequence:

>663_bases
GTGATGGAAATCGAAGCACGTCTTGAGGATGTCAGGCAACGCATTGCGGATGTCGCGGAAAAATCCGGTCGCAAGGCGGC
GGATGTTGCCTTGGTTGCGGTCTCCAAGACCTTCGATGCAGAAGCGATCCAGCCCGTCATCGATGCCGGCCAGCGCGTGT
TTGGCGAAAACCGCGTGCAGGAAGCGCAGGGCAAGTGGCCTGCGCTCAAAGAAAAGACATCCGATATCGAACTGCATCTG
ATCGGACCGCTGCAATCCAACAAGGCGGCGGATGCCGTCGCGCTGTTTGACGTCGTCGAGAGTATCGACCGGGAAAAAAT
AGCTCGCGCGCTTTCCGAAGAATGCGCCAGACAGGGCCGCAGCCTGCGGTTTTATGTGCAGGTCAACACCGGCCTTGAGC
CGCAGAAGGCCGGCATCGATCCGCGTGAAACCGTCGCCTTCGTGGCTTTCTGCCGGGACGAATTGAAACTGCCGGTCGAG
GGATTGATGTGCATTCCGCCGGCGGAGGAAAATCCGGGGCCGCATTTTGCGCTTCTGGCGAAGCTTGCCGGGCAATGCGG
TCTTGAGAAGCTTTCCATGGGCATGTCCGGCGATTTTGAGACGGCCGTCGAATTCGGCGCCACCAGCGTGCGGGTCGGCT
CGGCGATTTTCGGCAGCCGGTAG

Upstream 100 bases:

>100_bases
CGTTCAATCTTGGCCAGCGTGCCTCAAATGGTGCTAAAGGCGCTTGGCATCAAGGCAATCGGCGTCTAGTTAGCGGTTTG
AACGGTTTAAAAAAGGTCTT

Downstream 100 bases:

>100_bases
AAGCCTGAAAACAAAAAACCCGGCACGGCGGCCGGGTTTCAAATGTCGGAAAGACTTCGATCAGTATTGATCGTCCTCGT
CTTCGTCCTTCGGTGCGGAC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 220; Mature: 220

Protein sequence:

>220_residues
MMEIEARLEDVRQRIADVAEKSGRKAADVALVAVSKTFDAEAIQPVIDAGQRVFGENRVQEAQGKWPALKEKTSDIELHL
IGPLQSNKAADAVALFDVVESIDREKIARALSEECARQGRSLRFYVQVNTGLEPQKAGIDPRETVAFVAFCRDELKLPVE
GLMCIPPAEENPGPHFALLAKLAGQCGLEKLSMGMSGDFETAVEFGATSVRVGSAIFGSR

Sequences:

>Translated_220_residues
MMEIEARLEDVRQRIADVAEKSGRKAADVALVAVSKTFDAEAIQPVIDAGQRVFGENRVQEAQGKWPALKEKTSDIELHL
IGPLQSNKAADAVALFDVVESIDREKIARALSEECARQGRSLRFYVQVNTGLEPQKAGIDPRETVAFVAFCRDELKLPVE
GLMCIPPAEENPGPHFALLAKLAGQCGLEKLSMGMSGDFETAVEFGATSVRVGSAIFGSR
>Mature_220_residues
MMEIEARLEDVRQRIADVAEKSGRKAADVALVAVSKTFDAEAIQPVIDAGQRVFGENRVQEAQGKWPALKEKTSDIELHL
IGPLQSNKAADAVALFDVVESIDREKIARALSEECARQGRSLRFYVQVNTGLEPQKAGIDPRETVAFVAFCRDELKLPVE
GLMCIPPAEENPGPHFALLAKLAGQCGLEKLSMGMSGDFETAVEFGATSVRVGSAIFGSR

Specific function: Unknown

COG id: COG0325

COG function: function code R; Predicted enzyme with a TIM-barrel fold

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0001 family [H]

Homologues:

Organism=Homo sapiens, GI6005842, Length=210, Percent_Identity=38.5714285714286, Blast_Score=108, Evalue=5e-24,
Organism=Escherichia coli, GI1789321, Length=229, Percent_Identity=38.8646288209607, Blast_Score=133, Evalue=8e-33,
Organism=Caenorhabditis elegans, GI17533025, Length=209, Percent_Identity=41.1483253588517, Blast_Score=116, Evalue=8e-27,
Organism=Saccharomyces cerevisiae, GI6319435, Length=237, Percent_Identity=35.4430379746835, Blast_Score=97, Evalue=3e-21,
Organism=Drosophila melanogaster, GI45550861, Length=241, Percent_Identity=35.6846473029046, Blast_Score=120, Evalue=1e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001608
- InterPro:   IPR011078 [H]

Pfam domain/function: PF01168 Ala_racemase_N [H]

EC number: NA

Molecular weight: Translated: 23841; Mature: 23841

Theoretical pI: Translated: 4.80; Mature: 4.80

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMEIEARLEDVRQRIADVAEKSGRKAADVALVAVSKTFDAEAIQPVIDAGQRVFGENRVQ
CCCHHHHHHHHHHHHHHHHHHCCCCHHHEEEEEEECCCCHHHHHHHHHHHHHHHCHHHHH
EAQGKWPALKEKTSDIELHLIGPLQSNKAADAVALFDVVESIDREKIARALSEECARQGR
HHCCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
SLRFYVQVNTGLEPQKAGIDPRETVAFVAFCRDELKLPVEGLMCIPPAEENPGPHFALLA
CEEEEEEECCCCCHHHCCCCHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCHHHHHH
KLAGQCGLEKLSMGMSGDFETAVEFGATSVRVGSAIFGSR
HHHHHCCHHHHHCCCCCCHHHHHHHCCCHHHHCCHHHCCC
>Mature Secondary Structure
MMEIEARLEDVRQRIADVAEKSGRKAADVALVAVSKTFDAEAIQPVIDAGQRVFGENRVQ
CCCHHHHHHHHHHHHHHHHHHCCCCHHHEEEEEEECCCCHHHHHHHHHHHHHHHCHHHHH
EAQGKWPALKEKTSDIELHLIGPLQSNKAADAVALFDVVESIDREKIARALSEECARQGR
HHCCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
SLRFYVQVNTGLEPQKAGIDPRETVAFVAFCRDELKLPVEGLMCIPPAEENPGPHFALLA
CEEEEEEECCCCCHHHCCCCHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCHHHHHH
KLAGQCGLEKLSMGMSGDFETAVEFGATSVRVGSAIFGSR
HHHHHCCHHHHHCCCCCCHHHHHHHCCCHHHHCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10952301 [H]