Definition | Agrobacterium tumefaciens str. C58 chromosome circular, complete sequence. |
---|---|
Accession | NC_003062 |
Length | 2,841,580 |
Click here to switch to the map view.
The map label for this gene is ilvD [H]
Identifier: 15889985
GI number: 15889985
Start: 2731730
End: 2733514
Strand: Reverse
Name: ilvD [H]
Synonym: Atu2736
Alternate gene names: 15889985
Gene position: 2733514-2731730 (Counterclockwise)
Preceding gene: 15889986
Following gene: 15889984
Centisome position: 96.2
GC content: 62.41
Gene sequence:
>1785_bases ATGAGCGACGACAAGATACCCATGCGCCGCCTGCGATCCCAGGACTGGTTCGATAACCCCGATCATCTCGACATGACGGC GCTCTATCTGGAGCGCTTCATGAATTACGGCGTGACGCCGGAAGAGCTGCGCTCCGGCAAGCCTGTCATCGGCATCGCGC AGAGCGGCAGTGACCTCACGCCCTGCAACCGGGTCCATGTGGAACTGGTCAAGCGGGTACGCGATGGCATCCGTGATGCG GGCGGCATACCGATCGAGTTTCCAACCCATCCGATGTTCGAAAACTGCAAGCGCCCAACGGCGGCGCTTGATCGCAATCT CGCTTATCTCAGCCTCGTGGAAGTGCTTTACGGCTACCCGCTCGATGGTGTCGTTCTGACAACCGGCTGCGACAAGACCA CGCCTTCGGCGCTGATGGCGGCGAGCACGGTGGATATTCCCGCCATCGTGCTTTCCGGCGGGCCGATGCTCGACGGGTAT CATGACGGCGATCTGGTCGGTTCCGGCACCGTCATCTGGCGCATGCGCCGCAAATATGGCGCGGGCGAAATCACTCGCGA GGAGTTTTTGCAGGCGGCGCTGGAATCGGCTCCGTCGGTCGGGCATTGCAACACCATGGGCACCGCATCCACCATGAATG CCATTGCTGAAGCGCTCGGCATGTCACTTACCGGCTGCGGCGCGATCCCGGCCGCTTACCGCGAGCGTGGCCAGATGGCC TATCGCACCGGTCGTCGTGCCGTCGAGCTTGTGATCGAGAATATCAAGCCCTCCGACATCATGACGCGCGAGGCGTTTTT GAACGCGATCCGGGTCAACTCGGCGATCGGCGGTTCCACCAATGCCCAGCCGCATCTTGCGGCGATGGCCAAACATGCGG GCGTCGAGCTTCGCGAAGAGGACTGGCAGGCTCACGGTTACGACATTCCGCTTCTCGCCAATGTCCAGCCTGCCGGCAAA TGGCTGGGTGAGAAATACCACCGCGCCGGCGGCACGCCCGCCATCATGTGGGAGCTTCTGAAGGCAGGCAAGCTCGACGG AAGTTGTCCGACCGTGACCGGCAAAACCATGGCGGAAAATCTCGACGGGCGGGAATCGACCGACCGCGACGTGATCCTGC CCTATGACAAGCCGCTCAAGGAGCGCGCCGGTTTCCTCGTTCTCAAGGGCAATCTGTTCGATTTCGCCATCATGAAGACG AGCGTGATCTCGGCGGAGTTCCGCCAGCGTTACCTCAGCGAGCCGGGCCGCGAGGGGATATTCGAAGGCAAGTGCGTCGT ATTCGATGGTTCGGAGGATTATCACGCCCGCATCAACGAGCCGTCGCTGGATATTGACGAGCGCACCATTCTTGTCATTC GTGGCGCGGGGCCGCTCGGCTGGCCGGGTTCGGCCGAGGTCGTCAACATGCAGCCACCGGATGCGCTTCTGAAAAAGGGC ATTACCAGCCTGCCGACGATCGGCGACGGTCGGCAGTCGGGAACGGCGGACAGCCCGTCGATCCTCAATGCTTCCCCGGA AAGTGCGGCGGGTGGCGGGCTGGCATGGCTGCGCACTGGCGATGTGATCCGCATCGACTTCAACAAGGGTGAGTGCAATG CGCTGGTGCCGCAAGCGGAGCTTGATGCCCGCAAGGCCGACGGCATACCCGCCGTGCCCGCCGATGCAACGCCCTGGCAG CGTATCTATCGTCAATCGGTGACCCAGCTTTCGGACGGTGCGGTGCTGGAAGGGGCGGCGGATTTCCGTCGGATCGCCGA AAAAATGCCCCGGCACAATCACTGA
Upstream 100 bases:
>100_bases CGATGATTTCGTCGGTGATGGCGGGGCGGATATCGATCATAGCGGCATCCTGCTTTACCTCGAAAAACTCAACAATCGTG AACAGGGCTGAGGCGATCTC
Downstream 100 bases:
>100_bases CCGAACATGACAAAATCCCCGGCCAGGACCGGGGATTTTTCTTTTGGAGGCGGTTTCGCATTTGATCACGACCTCCTAAT GTAGCCTGAGATTCCGCATT
Product: dihydroxy-acid dehydratase
Products: NA
Alternate protein names: DAD [H]
Number of amino acids: Translated: 594; Mature: 593
Protein sequence:
>594_residues MSDDKIPMRRLRSQDWFDNPDHLDMTALYLERFMNYGVTPEELRSGKPVIGIAQSGSDLTPCNRVHVELVKRVRDGIRDA GGIPIEFPTHPMFENCKRPTAALDRNLAYLSLVEVLYGYPLDGVVLTTGCDKTTPSALMAASTVDIPAIVLSGGPMLDGY HDGDLVGSGTVIWRMRRKYGAGEITREEFLQAALESAPSVGHCNTMGTASTMNAIAEALGMSLTGCGAIPAAYRERGQMA YRTGRRAVELVIENIKPSDIMTREAFLNAIRVNSAIGGSTNAQPHLAAMAKHAGVELREEDWQAHGYDIPLLANVQPAGK WLGEKYHRAGGTPAIMWELLKAGKLDGSCPTVTGKTMAENLDGRESTDRDVILPYDKPLKERAGFLVLKGNLFDFAIMKT SVISAEFRQRYLSEPGREGIFEGKCVVFDGSEDYHARINEPSLDIDERTILVIRGAGPLGWPGSAEVVNMQPPDALLKKG ITSLPTIGDGRQSGTADSPSILNASPESAAGGGLAWLRTGDVIRIDFNKGECNALVPQAELDARKADGIPAVPADATPWQ RIYRQSVTQLSDGAVLEGAADFRRIAEKMPRHNH
Sequences:
>Translated_594_residues MSDDKIPMRRLRSQDWFDNPDHLDMTALYLERFMNYGVTPEELRSGKPVIGIAQSGSDLTPCNRVHVELVKRVRDGIRDA GGIPIEFPTHPMFENCKRPTAALDRNLAYLSLVEVLYGYPLDGVVLTTGCDKTTPSALMAASTVDIPAIVLSGGPMLDGY HDGDLVGSGTVIWRMRRKYGAGEITREEFLQAALESAPSVGHCNTMGTASTMNAIAEALGMSLTGCGAIPAAYRERGQMA YRTGRRAVELVIENIKPSDIMTREAFLNAIRVNSAIGGSTNAQPHLAAMAKHAGVELREEDWQAHGYDIPLLANVQPAGK WLGEKYHRAGGTPAIMWELLKAGKLDGSCPTVTGKTMAENLDGRESTDRDVILPYDKPLKERAGFLVLKGNLFDFAIMKT SVISAEFRQRYLSEPGREGIFEGKCVVFDGSEDYHARINEPSLDIDERTILVIRGAGPLGWPGSAEVVNMQPPDALLKKG ITSLPTIGDGRQSGTADSPSILNASPESAAGGGLAWLRTGDVIRIDFNKGECNALVPQAELDARKADGIPAVPADATPWQ RIYRQSVTQLSDGAVLEGAADFRRIAEKMPRHNH >Mature_593_residues SDDKIPMRRLRSQDWFDNPDHLDMTALYLERFMNYGVTPEELRSGKPVIGIAQSGSDLTPCNRVHVELVKRVRDGIRDAG GIPIEFPTHPMFENCKRPTAALDRNLAYLSLVEVLYGYPLDGVVLTTGCDKTTPSALMAASTVDIPAIVLSGGPMLDGYH DGDLVGSGTVIWRMRRKYGAGEITREEFLQAALESAPSVGHCNTMGTASTMNAIAEALGMSLTGCGAIPAAYRERGQMAY RTGRRAVELVIENIKPSDIMTREAFLNAIRVNSAIGGSTNAQPHLAAMAKHAGVELREEDWQAHGYDIPLLANVQPAGKW LGEKYHRAGGTPAIMWELLKAGKLDGSCPTVTGKTMAENLDGRESTDRDVILPYDKPLKERAGFLVLKGNLFDFAIMKTS VISAEFRQRYLSEPGREGIFEGKCVVFDGSEDYHARINEPSLDIDERTILVIRGAGPLGWPGSAEVVNMQPPDALLKKGI TSLPTIGDGRQSGTADSPSILNASPESAAGGGLAWLRTGDVIRIDFNKGECNALVPQAELDARKADGIPAVPADATPWQR IYRQSVTQLSDGAVLEGAADFRRIAEKMPRHNH
Specific function: Valine and isoleucine biosynthesis; fourth step. [C]
COG id: COG0129
COG function: function code EG; Dihydroxyacid dehydratase/phosphogluconate dehydratase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the ilvD/edd family [H]
Homologues:
Organism=Escherichia coli, GI48994964, Length=557, Percent_Identity=29.802513464991, Blast_Score=177, Evalue=1e-45, Organism=Escherichia coli, GI1788157, Length=470, Percent_Identity=30.4255319148936, Blast_Score=177, Evalue=2e-45, Organism=Escherichia coli, GI2367371, Length=464, Percent_Identity=28.448275862069, Blast_Score=127, Evalue=2e-30, Organism=Escherichia coli, GI1786464, Length=477, Percent_Identity=28.7211740041929, Blast_Score=121, Evalue=1e-28, Organism=Saccharomyces cerevisiae, GI6322476, Length=560, Percent_Identity=28.5714285714286, Blast_Score=197, Evalue=4e-51,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR015928 - InterPro: IPR004404 - InterPro: IPR000581 - InterPro: IPR020558 [H]
Pfam domain/function: PF00920 ILVD_EDD [H]
EC number: =4.2.1.9 [H]
Molecular weight: Translated: 64449; Mature: 64318
Theoretical pI: Translated: 5.83; Mature: 5.83
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 4.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSDDKIPMRRLRSQDWFDNPDHLDMTALYLERFMNYGVTPEELRSGKPVIGIAQSGSDLT CCCCCCHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHCCCCEEEEECCCCCCC PCNRVHVELVKRVRDGIRDAGGIPIEFPTHPMFENCKRPTAALDRNLAYLSLVEVLYGYP CHHHHHHHHHHHHHHHHHHCCCCEEECCCCHHHHHCCCCHHHHHCCHHHHHHHHHHHCCC LDGVVLTTGCDKTTPSALMAASTVDIPAIVLSGGPMLDGYHDGDLVGSGTVIWRMRRKYG CCCEEEECCCCCCCCHHHHHHHCCCCCEEEEECCCCCCCCCCCCEECCCCEEEEEHHHCC AGEITREEFLQAALESAPSVGHCNTMGTASTMNAIAEALGMSLTGCGAIPAAYRERGQMA CCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHCCHHH YRTGRRAVELVIENIKPSDIMTREAFLNAIRVNSAIGGSTNAQPHLAAMAKHAGVELREE HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCEEECC DWQAHGYDIPLLANVQPAGKWLGEKYHRAGGTPAIMWELLKAGKLDGSCPTVTGKTMAEN CCCCCCCCCCEEECCCHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHC LDGRESTDRDVILPYDKPLKERAGFLVLKGNLFDFAIMKTSVISAEFRQRYLSEPGREGI CCCCCCCCCCEEECCCCCHHHCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCCCC FEGKCVVFDGSEDYHARINEPSLDIDERTILVIRGAGPLGWPGSAEVVNMQPPDALLKKG CCCEEEEEECCCCCEEECCCCCCCCCCEEEEEEECCCCCCCCCCCCEEECCCCHHHHHCC ITSLPTIGDGRQSGTADSPSILNASPESAAGGGLAWLRTGDVIRIDFNKGECNALVPQAE CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCEEEEECCCCCCCEECCCHH LDARKADGIPAVPADATPWQRIYRQSVTQLSDGAVLEGAADFRRIAEKMPRHNH HCCHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEECCHHHHHHHHHHCCCCCC >Mature Secondary Structure SDDKIPMRRLRSQDWFDNPDHLDMTALYLERFMNYGVTPEELRSGKPVIGIAQSGSDLT CCCCCHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHCCCCEEEEECCCCCCC PCNRVHVELVKRVRDGIRDAGGIPIEFPTHPMFENCKRPTAALDRNLAYLSLVEVLYGYP CHHHHHHHHHHHHHHHHHHCCCCEEECCCCHHHHHCCCCHHHHHCCHHHHHHHHHHHCCC LDGVVLTTGCDKTTPSALMAASTVDIPAIVLSGGPMLDGYHDGDLVGSGTVIWRMRRKYG CCCEEEECCCCCCCCHHHHHHHCCCCCEEEEECCCCCCCCCCCCEECCCCEEEEEHHHCC AGEITREEFLQAALESAPSVGHCNTMGTASTMNAIAEALGMSLTGCGAIPAAYRERGQMA CCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHCCHHH YRTGRRAVELVIENIKPSDIMTREAFLNAIRVNSAIGGSTNAQPHLAAMAKHAGVELREE HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCEEECC DWQAHGYDIPLLANVQPAGKWLGEKYHRAGGTPAIMWELLKAGKLDGSCPTVTGKTMAEN CCCCCCCCCCEEECCCHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHC LDGRESTDRDVILPYDKPLKERAGFLVLKGNLFDFAIMKTSVISAEFRQRYLSEPGREGI CCCCCCCCCCEEECCCCCHHHCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCCCC FEGKCVVFDGSEDYHARINEPSLDIDERTILVIRGAGPLGWPGSAEVVNMQPPDALLKKG CCCEEEEEECCCCCEEECCCCCCCCCCEEEEEEECCCCCCCCCCCCEEECCCCHHHHHCC ITSLPTIGDGRQSGTADSPSILNASPESAAGGGLAWLRTGDVIRIDFNKGECNALVPQAE CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCEEEEECCCCCCCEECCCHH LDARKADGIPAVPADATPWQRIYRQSVTQLSDGAVLEGAADFRRIAEKMPRHNH HCCHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEECCHHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11466286 [H]